LOC110255185 (proteoglycan 3-like) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: LOC110255185 (proteoglycan 3-like) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC110255185
Name: proteoglycan 3-like
RGD ID: 14218427
Description: INVOLVED IN immune response (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1213,575,210 - 13,579,376 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC110255185
376 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system hemolymphoid system nervous system
High
Medium
Low 2 1
Below cutoff 2 12

Sequence


RefSeq Acc Id: XM_003480700   ⟹   XP_003480748
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1213,575,210 - 13,579,376 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003480748 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000038863
  ENSSSCP00000038863.2
  ENSSSCP00000055401.2
  ENSSSCP00070043847.1
RefSeq Acc Id: XP_003480748   ⟸   XM_003480700
- UniProtKB: A0A4X1VQM6 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027553 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070025901 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000040049.3 UniProtKB/TrEMBL
  ENSSSCT00000042004 ENTREZGENE
  ENSSSCT00000042004.3 UniProtKB/TrEMBL
  ENSSSCT00070051825.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  Eosinophil_major_basic UniProtKB/TrEMBL
NCBI Gene LOC110255185 ENTREZGENE
PANTHER C-TYPE LECTIN-RELATED UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PRINTS EMAJORBASICP UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A287BH63_PIG UniProtKB/TrEMBL
  A0A4X1VQM6 ENTREZGENE, UniProtKB/TrEMBL
  I3LEF9_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287B205 UniProtKB/TrEMBL