NDUFS4 (NADH:ubiquinone oxidoreductase subunit S4) - Rat Genome Database

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Gene: NDUFS4 (NADH:ubiquinone oxidoreductase subunit S4) Sus scrofa
Analyze
Symbol: NDUFS4
Name: NADH:ubiquinone oxidoreductase subunit S4
RGD ID: 14217955
Description: ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); INVOLVED IN adult behavior (ortholog); adult walking behavior (ortholog); brain development (ortholog); ASSOCIATED WITH brain disease (ortholog); COVID-19 (ortholog); developmental coordination disorder (ortholog); FOUND IN mitochondrial respiratory chain complex I (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitochondrial NADH dehydrogenase Fe-S protein 4; NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1632,874,450 - 32,987,828 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11632,874,418 - 32,985,638 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21634,963,225 - 34,992,577 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15679890   PMID:22301074   PMID:23073781   PMID:30032202  


Genomics

Comparative Map Data
NDUFS4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1632,874,450 - 32,987,828 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11632,874,418 - 32,985,638 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21634,963,225 - 34,992,577 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFS4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38553,560,639 - 53,683,338 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl553,560,633 - 53,683,338 (+)EnsemblGRCh38hg38GRCh38
GRCh37552,856,469 - 52,979,168 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36552,892,242 - 53,014,925 (+)NCBINCBI36Build 36hg18NCBI36
Build 34552,892,241 - 53,014,924NCBI
Celera549,810,070 - 49,932,765 (+)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef549,829,192 - 49,951,782 (+)NCBIHuRef
CHM1_1552,859,382 - 52,982,064 (+)NCBICHM1_1
T2T-CHM13v2.0554,388,486 - 54,511,162 (+)NCBIT2T-CHM13v2.0
Ndufs4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913114,424,331 - 114,524,630 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13114,424,331 - 114,524,794 (-)EnsemblGRCm39 Ensembl
GRCm3813114,287,795 - 114,388,094 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13114,287,795 - 114,388,258 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713115,078,003 - 115,178,302 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613115,409,528 - 115,508,921 (-)NCBIMGSCv36mm8
Celera13118,620,039 - 118,721,271 (-)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1364.12NCBI
Ndufs4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8247,684,420 - 47,794,914 (-)NCBIGRCr8
mRatBN7.2245,951,327 - 46,061,829 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl245,951,313 - 46,061,846 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx253,055,093 - 53,165,153 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0251,113,456 - 51,223,515 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0245,988,050 - 46,102,968 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0246,372,488 - 46,476,162 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl246,372,518 - 46,476,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0265,403,197 - 65,515,243 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4245,839,236 - 46,479,619 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera241,712,356 - 41,822,320 (-)NCBICelera
Cytogenetic Map2q14NCBI
Ndufs4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544613,764,907 - 13,864,824 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544613,764,907 - 13,864,824 (-)NCBIChiLan1.0ChiLan1.0
NDUFS4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2460,256,021 - 60,378,662 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1558,409,645 - 58,532,287 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0560,344,363 - 60,467,008 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1561,966,124 - 62,088,388 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl561,966,124 - 62,088,375 (-)Ensemblpanpan1.1panPan2
NDUFS4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1461,613,580 - 61,727,219 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl461,613,589 - 61,727,205 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha461,379,036 - 61,492,669 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0462,107,235 - 62,231,743 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1461,884,352 - 61,997,681 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0462,012,344 - 62,126,203 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0462,529,496 - 62,643,162 (-)NCBIUU_Cfam_GSD_1.0
Ndufs4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213204,892,598 - 204,995,733 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648013,827,743 - 13,932,238 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648013,829,093 - 13,932,202 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFS4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1449,851,012 - 49,967,533 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl449,851,014 - 49,967,590 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660821,152,990 - 1,272,340 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufs4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247595,630,522 - 5,733,928 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NDUFS4
2301 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 2 2 19 2 2 1
Low 2 3 4 1 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000022508   ⟹   ENSSSCP00000026216
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1632,874,450 - 32,968,523 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000051391   ⟹   ENSSSCP00000045169
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1632,874,461 - 32,987,828 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000079514   ⟹   ENSSSCP00000070436
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1632,874,450 - 32,985,628 (+)Ensembl
RefSeq Acc Id: XM_005672445   ⟹   XP_005672502
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11632,874,418 - 32,985,638 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021077054   ⟹   XP_020932713
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11632,874,418 - 32,982,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021077055   ⟹   XP_020932714
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11632,874,418 - 32,985,638 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005672502 (Get FASTA)   NCBI Sequence Viewer  
  XP_020932713 (Get FASTA)   NCBI Sequence Viewer  
  XP_020932714 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AET25525 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000026216
  ENSSSCP00000026216.2
  ENSSSCP00000045169
  ENSSSCP00000045169.1
  ENSSSCP00000070436
  ENSSSCP00000070436.1
  ENSSSCP00005044921.1
  ENSSSCP00005044928.1
  ENSSSCP00005044936.1
  ENSSSCP00005044943.1
  ENSSSCP00005044959.1
  ENSSSCP00015017677.1
  ENSSSCP00015017695.1
  ENSSSCP00015017804.1
  ENSSSCP00015017870.1
  ENSSSCP00015017975.1
  ENSSSCP00025012835.1
  ENSSSCP00025012849.1
  ENSSSCP00025012865.1
  ENSSSCP00025012872.1
  ENSSSCP00025012884.1
  ENSSSCP00025012892.1
  ENSSSCP00030014662.1
  ENSSSCP00030014669.1
  ENSSSCP00030014680.1
  ENSSSCP00030014701.1
  ENSSSCP00035046757.1
  ENSSSCP00035046783.1
  ENSSSCP00035046805.1
  ENSSSCP00035046831.1
  ENSSSCP00035046867.1
  ENSSSCP00040017098.1
  ENSSSCP00040017110.1
  ENSSSCP00040017133.1
  ENSSSCP00040017143.1
  ENSSSCP00040017169.1
  ENSSSCP00040017195.1
  ENSSSCP00045032285.1
  ENSSSCP00045032334.1
  ENSSSCP00045032381.1
  ENSSSCP00045032446.1
  ENSSSCP00045032520.1
  ENSSSCP00045032580.1
  ENSSSCP00055010303.1
  ENSSSCP00055010323.1
  ENSSSCP00055010374.1
  ENSSSCP00055010420.1
  ENSSSCP00055010452.1
  ENSSSCP00055010486.1
  ENSSSCP00060017834.1
  ENSSSCP00060017835.1
  ENSSSCP00060017839.1
  ENSSSCP00060017841.1
  ENSSSCP00060017846.1
  ENSSSCP00065024148.1
  ENSSSCP00065024149.1
  ENSSSCP00065024150.1
  ENSSSCP00065024153.1
  ENSSSCP00065024157.1
  ENSSSCP00065024160.1
  ENSSSCP00070004003.1
  ENSSSCP00070004007.1
  ENSSSCP00070004012.1
  ENSSSCP00070004017.1
RefSeq Acc Id: XP_020932714   ⟸   XM_021077055
- Peptide Label: isoform X3
- UniProtKB: A0A4X1SN90 (UniProtKB/TrEMBL),   I3LQ38 (UniProtKB/TrEMBL),   A0A8D1D6F7 (UniProtKB/TrEMBL),   A0A8D1IJE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005672502   ⟸   XM_005672445
- Peptide Label: isoform X1
- UniProtKB: A0A287AMN2 (UniProtKB/TrEMBL),   A0A4X1SN37 (UniProtKB/TrEMBL),   A0A8D1BDS1 (UniProtKB/TrEMBL),   G8IFA6 (UniProtKB/TrEMBL),   A0A8D0M4W7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932713   ⟸   XM_021077054
- Peptide Label: isoform X2
- UniProtKB: A0A4X1SN86 (UniProtKB/TrEMBL),   A0A8D0W4J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000045169   ⟸   ENSSSCT00000051391
RefSeq Acc Id: ENSSSCP00000070436   ⟸   ENSSSCT00000079514
RefSeq Acc Id: ENSSSCP00000026216   ⟸   ENSSSCT00000022508


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016893 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005044677 UniProtKB/TrEMBL
  ENSSSCG00015033718 UniProtKB/TrEMBL
  ENSSSCG00025022251 UniProtKB/TrEMBL
  ENSSSCG00030023495 UniProtKB/TrEMBL
  ENSSSCG00035079090 UniProtKB/TrEMBL
  ENSSSCG00040030335 UniProtKB/TrEMBL
  ENSSSCG00045027319 UniProtKB/TrEMBL
  ENSSSCG00055006784 UniProtKB/TrEMBL
  ENSSSCG00060030985 UniProtKB/TrEMBL
  ENSSSCG00065040636 UniProtKB/TrEMBL
  ENSSSCG00070002650 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000022508 ENTREZGENE
  ENSSSCT00000022508.4 UniProtKB/TrEMBL
  ENSSSCT00000051391 ENTREZGENE
  ENSSSCT00000051391.2 UniProtKB/TrEMBL
  ENSSSCT00000079514 ENTREZGENE
  ENSSSCT00000079514.1 UniProtKB/TrEMBL
  ENSSSCT00005071945.1 UniProtKB/TrEMBL
  ENSSSCT00005071955.1 UniProtKB/TrEMBL
  ENSSSCT00005071966.1 UniProtKB/TrEMBL
  ENSSSCT00005071976.1 UniProtKB/TrEMBL
  ENSSSCT00005072002.1 UniProtKB/TrEMBL
  ENSSSCT00015044712.1 UniProtKB/TrEMBL
  ENSSSCT00015044750.1 UniProtKB/TrEMBL
  ENSSSCT00015044942.1 UniProtKB/TrEMBL
  ENSSSCT00015045096.1 UniProtKB/TrEMBL
  ENSSSCT00015045336.1 UniProtKB/TrEMBL
  ENSSSCT00025030266.1 UniProtKB/TrEMBL
  ENSSSCT00025030296.1 UniProtKB/TrEMBL
  ENSSSCT00025030337.1 UniProtKB/TrEMBL
  ENSSSCT00025030364.1 UniProtKB/TrEMBL
  ENSSSCT00025030397.1 UniProtKB/TrEMBL
  ENSSSCT00025030432.1 UniProtKB/TrEMBL
  ENSSSCT00030032599.1 UniProtKB/TrEMBL
  ENSSSCT00030032612.1 UniProtKB/TrEMBL
  ENSSSCT00030032629.1 UniProtKB/TrEMBL
  ENSSSCT00030032657.1 UniProtKB/TrEMBL
  ENSSSCT00035108034.1 UniProtKB/TrEMBL
  ENSSSCT00035108077.1 UniProtKB/TrEMBL
  ENSSSCT00035108110.1 UniProtKB/TrEMBL
  ENSSSCT00035108159.1 UniProtKB/TrEMBL
  ENSSSCT00035108226.1 UniProtKB/TrEMBL
  ENSSSCT00040040815.1 UniProtKB/TrEMBL
  ENSSSCT00040040847.1 UniProtKB/TrEMBL
  ENSSSCT00040040902.1 UniProtKB/TrEMBL
  ENSSSCT00040040934.1 UniProtKB/TrEMBL
  ENSSSCT00040041005.1 UniProtKB/TrEMBL
  ENSSSCT00040041063.1 UniProtKB/TrEMBL
  ENSSSCT00045046515.1 UniProtKB/TrEMBL
  ENSSSCT00045046584.1 UniProtKB/TrEMBL
  ENSSSCT00045046656.1 UniProtKB/TrEMBL
  ENSSSCT00045046746.1 UniProtKB/TrEMBL
  ENSSSCT00045046848.1 UniProtKB/TrEMBL
  ENSSSCT00045046933.1 UniProtKB/TrEMBL
  ENSSSCT00055013120.1 UniProtKB/TrEMBL
  ENSSSCT00055013147.1 UniProtKB/TrEMBL
  ENSSSCT00055013207.1 UniProtKB/TrEMBL
  ENSSSCT00055013258.1 UniProtKB/TrEMBL
  ENSSSCT00055013294.1 UniProtKB/TrEMBL
  ENSSSCT00055013335.1 UniProtKB/TrEMBL
  ENSSSCT00060041919.1 UniProtKB/TrEMBL
  ENSSSCT00060041923.1 UniProtKB/TrEMBL
  ENSSSCT00060041936.1 UniProtKB/TrEMBL
  ENSSSCT00060041939.1 UniProtKB/TrEMBL
  ENSSSCT00060041949.1 UniProtKB/TrEMBL
  ENSSSCT00065055553.1 UniProtKB/TrEMBL
  ENSSSCT00065055554.1 UniProtKB/TrEMBL
  ENSSSCT00065055556.1 UniProtKB/TrEMBL
  ENSSSCT00065055563.1 UniProtKB/TrEMBL
  ENSSSCT00065055574.1 UniProtKB/TrEMBL
  ENSSSCT00065055579.1 UniProtKB/TrEMBL
  ENSSSCT00070004920.1 UniProtKB/TrEMBL
  ENSSSCT00070004924.1 UniProtKB/TrEMBL
  ENSSSCT00070004931.1 UniProtKB/TrEMBL
  ENSSSCT00070004934.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.160.190 UniProtKB/TrEMBL
InterPro NADH_UbQ_FeS_4_mit UniProtKB/TrEMBL
  NDUFS4-like_sf UniProtKB/TrEMBL
NCBI Gene NDUFS4 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 4, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR12219 UniProtKB/TrEMBL
Pfam ETC_C1_NDUFA4 UniProtKB/TrEMBL
UniProt A0A287AMN2 ENTREZGENE
  A0A4X1SN37 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SN83_PIG UniProtKB/TrEMBL
  A0A4X1SN86 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SN90 ENTREZGENE
  A0A5G2QZZ2_PIG UniProtKB/TrEMBL
  A0A8D0M4K1_PIG UniProtKB/TrEMBL
  A0A8D0M4W7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0RIB9_PIG UniProtKB/TrEMBL
  A0A8D0U192_PIG UniProtKB/TrEMBL
  A0A8D0W4J3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BDS1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BDW0_PIG UniProtKB/TrEMBL
  A0A8D1BI34_PIG UniProtKB/TrEMBL
  A0A8D1D6F7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1D6G3_PIG UniProtKB/TrEMBL
  A0A8D1IJE5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1YRR3_PIG UniProtKB/TrEMBL
  A0A8D1YXT3_PIG UniProtKB/TrEMBL
  G8IFA6 ENTREZGENE, UniProtKB/TrEMBL
  I3LQ38 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287AMN2 UniProtKB/TrEMBL
  A0A4X1SN90 UniProtKB/TrEMBL
VGNC ID VGNC:90652 ENTREZGENE