DUSP13 (dual specificity phosphatase 13) - Rat Genome Database

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Gene: DUSP13 (dual specificity phosphatase 13) Sus scrofa
Analyze
Symbol: DUSP13
Name: dual specificity phosphatase 13
RGD ID: 14217698
Description: ENCODES a protein that exhibits hydrolase activity (inferred); phosphatase activity (inferred); phosphoprotein phosphatase activity (inferred); INVOLVED IN dephosphorylation (inferred); peptidyl-tyrosine dephosphorylation (inferred); protein dephosphorylation (inferred); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: dual specificity protein phosphatase 13
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11477,660,124 - 77,677,713 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21483,790,369 - 83,804,190 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
DUSP13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11477,660,124 - 77,677,713 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21483,790,369 - 83,804,190 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DUSP13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1075,094,432 - 75,109,221 (-)EnsemblGRCh38hg38GRCh38
GRCh381075,094,432 - 75,109,221 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371076,854,192 - 76,868,949 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361076,524,196 - 76,538,976 (-)NCBINCBI36hg18NCBI36
Build 341076,524,198 - 76,529,254NCBI
Celera1070,142,445 - 70,157,225 (-)NCBI
Cytogenetic Map10q22.2NCBI
HuRef1070,852,719 - 70,867,439 (-)NCBIHuRef
CHM1_11077,135,938 - 77,150,718 (-)NCBICHM1_1
Dusp13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391421,783,460 - 21,798,704 (-)NCBIGRCm39mm39
GRCm39 Ensembl1421,783,462 - 21,801,249 (-)Ensembl
GRCm381421,733,395 - 21,748,651 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1421,733,394 - 21,751,181 (-)EnsemblGRCm38mm10GRCm38
MGSCv371422,552,617 - 22,567,844 (-)NCBIGRCm37mm9NCBIm37
MGSCv361420,521,947 - 20,537,174 (-)NCBImm8
Celera1418,116,274 - 18,131,815 (-)NCBICelera
Cytogenetic Map14A3NCBI
Dusp13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2152,559,720 - 2,575,105 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl152,533,547 - 2,575,539 (+)Ensembl
Rnor_6.0152,524,435 - 2,541,734 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,733,114 - 2,735,730 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,734,068 - 2,748,466 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,526,368 - 2,541,732 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,526,368 - 2,541,729 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0152,714,150 - 2,729,517 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4152,614,864 - 2,630,230 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1152,622,556 - 2,630,228 (+)NCBI
Celera152,008,057 - 2,023,408 (-)NCBICelera
Cytogenetic Map15p16NCBI
DUSP13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11074,287,734 - 74,302,527 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1074,287,734 - 74,302,503 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01071,623,286 - 71,638,049 (-)NCBIMhudiblu_PPA_v0panPan3
DUSP13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1425,360,291 - 25,373,299 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl425,360,294 - 25,373,238 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha425,495,596 - 25,508,622 (-)NCBI
ROS_Cfam_1.0425,642,971 - 25,656,033 (-)NCBI
ROS_Cfam_1.0 Ensembl425,642,981 - 25,656,180 (-)Ensembl
UMICH_Zoey_3.1425,538,140 - 25,546,032 (-)NCBI
UNSW_CanFamBas_1.0425,738,781 - 25,751,780 (-)NCBI
UU_Cfam_GSD_1.0426,094,302 - 26,107,339 (-)NCBI
Dusp13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721355,739,914 - 55,743,734 (+)NCBI
SpeTri2.0NW_0049365214,232,678 - 4,245,199 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103215967
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1956,261,811 - 56,276,861 (+)NCBIChlSab1.1chlSab2
ChlSab1.1956,261,811 - 56,276,861 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl956,267,491 - 56,276,844 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604816,755,029 - 16,764,386 (+)NCBIVero_WHO_p1.0
Dusp13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247548,446,376 - 8,457,678 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system reproductive system
High
Medium 2
Low
Below cutoff 7 4 3 3 5 2

Sequence


Reference Sequences
RefSeq Acc Id: NM_001243472   ⟹   NP_001230401
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11477,663,877 - 77,672,737 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005671056   ⟹   XP_005671113
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11477,660,124 - 77,677,711 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005671060   ⟹   XP_005671117
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11477,673,997 - 77,677,713 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013983312   ⟹   XP_013838766
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11477,660,124 - 77,674,828 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013983314   ⟹   XP_013838768
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11477,660,124 - 77,676,590 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021071924   ⟹   XP_020927583
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11477,660,124 - 77,677,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021071925   ⟹   XP_020927584
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11477,660,124 - 77,677,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021071926   ⟹   XP_020927585
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11477,660,124 - 77,672,335 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021071927   ⟹   XP_020927586
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11477,660,124 - 77,677,600 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002338276
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11477,660,124 - 77,677,713 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002338277
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11477,660,124 - 77,677,713 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005671113   ⟸   XM_005671056
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020927584   ⟸   XM_021071925
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020927583   ⟸   XM_021071924
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020927586   ⟸   XM_021071927
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013838768   ⟸   XM_013983314
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013838766   ⟸   XM_013983312
- Peptide Label: isoform X2
- UniProtKB: A0A286ZLC7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020927585   ⟸   XM_021071926
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001230401   ⟸   NM_001243472
- Sequence:
RefSeq Acc Id: XP_005671117   ⟸   XM_005671060
- Peptide Label: isoform X4
- Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035105 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070002559 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000032358 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000046904 UniProtKB/TrEMBL
  ENSSSCP00000066064 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000072617 UniProtKB/TrEMBL
  ENSSSCP00000073279 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070003885 UniProtKB/TrEMBL
  ENSSSCP00070003889 UniProtKB/TrEMBL
  ENSSSCP00070003907 UniProtKB/TrEMBL
  ENSSSCP00070003921 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000053525 UniProtKB/TrEMBL
  ENSSSCT00000065252 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000077723 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000089102 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000091267 UniProtKB/TrEMBL
  ENSSSCT00070004761 UniProtKB/TrEMBL
  ENSSSCT00070004766 UniProtKB/TrEMBL
  ENSSSCT00070004786 UniProtKB/TrEMBL
  ENSSSCT00070004801 UniProtKB/TrEMBL
Gene3D-CATH 3.90.190.10 UniProtKB/TrEMBL
InterPro Atypical_DUSP_famA UniProtKB/TrEMBL
  Dual-sp_phosphatase_cat-dom UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL_dom UniProtKB/TrEMBL
NCBI Gene DUSP13 ENTREZGENE
PANTHER PTHR45682 UniProtKB/TrEMBL
Pfam DSPc UniProtKB/TrEMBL
PRINTS ADSPHPHTASEA UniProtKB/TrEMBL
PROSITE TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL UniProtKB/TrEMBL
SMART DSPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/TrEMBL
UniProt A0A286ZLC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AS46_PIG UniProtKB/TrEMBL
  A0A4X1SMZ0_PIG UniProtKB/TrEMBL
  A0A4X1SNE8_PIG UniProtKB/TrEMBL
  A0A4X1SP77_PIG UniProtKB/TrEMBL
  A0A4X1SPF8_PIG UniProtKB/TrEMBL
  A0A5G2QN25_PIG UniProtKB/TrEMBL
  A0A5G2RAD0_PIG UniProtKB/TrEMBL
  A0A5G2RKH6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:107137 ENTREZGENE