ASXL1 (ASXL transcriptional regulator 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: ASXL1 (ASXL transcriptional regulator 1) Sus scrofa
Analyze
Symbol: ASXL1
Name: ASXL transcriptional regulator 1
RGD ID: 14216911
Description: ENCODES a protein that exhibits chromatin binding (inferred); DNA binding (inferred); metal ion binding (inferred); INVOLVED IN animal organ morphogenesis (ortholog); bone development (ortholog); bone marrow development (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); acute promyelocytic leukemia (ortholog); atypical chronic myeloid leukemia (ortholog); FOUND IN PR-DUB complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: additional sex combs like 1, transcriptional regulator; putative Polycomb group protein ASXL1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1735,985,535 - 36,067,119 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11735,985,978 - 36,067,122 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21740,908,208 - 40,984,182 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ASXL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1735,985,535 - 36,067,119 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11735,985,978 - 36,067,122 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21740,908,208 - 40,984,182 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASXL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382032,358,331 - 32,439,319 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2032,358,330 - 32,439,319 (+)EnsemblGRCh38hg38GRCh38
GRCh372030,946,134 - 31,027,122 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362030,409,814 - 30,490,783 (+)NCBINCBI36Build 36hg18NCBI36
Build 342030,409,820 - 30,490,783NCBI
Celera2027,702,183 - 27,783,146 (+)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2027,742,560 - 27,816,603 (+)NCBIHuRef
CHM1_12030,850,605 - 30,932,052 (+)NCBICHM1_1
T2T-CHM13v2.02034,083,215 - 34,164,178 (+)NCBIT2T-CHM13v2.0
Asxl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392153,187,750 - 153,245,927 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2153,187,749 - 153,245,927 (+)EnsemblGRCm39 Ensembl
GRCm382153,345,830 - 153,404,007 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2153,345,829 - 153,404,007 (+)EnsemblGRCm38mm10GRCm38
MGSCv372153,171,875 - 153,229,743 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362153,037,493 - 153,095,448 (+)NCBIMGSCv36mm8
MGSCv362154,151,679 - 154,209,986 (+)NCBIMGSCv36mm8
Celera2159,188,615 - 159,246,403 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.41NCBI
Asxl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83162,273,828 - 162,341,742 (+)NCBIGRCr8
mRatBN7.23141,814,012 - 141,881,526 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3141,813,433 - 141,881,538 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03148,832,231 - 148,902,356 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3148,837,814 - 148,900,452 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03155,202,740 - 155,267,814 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43143,703,295 - 143,767,523 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3140,560,551 - 140,627,551 (+)NCBICelera
Cytogenetic Map3q41NCBI
Asxl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542228,664,282 - 28,721,896 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542228,662,392 - 28,721,896 (-)NCBIChiLan1.0ChiLan1.0
ASXL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22138,038,565 - 38,130,871 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12038,043,027 - 38,123,069 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02028,647,004 - 28,727,865 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12029,773,836 - 29,852,433 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2029,774,582 - 29,850,453 (+)Ensemblpanpan1.1panPan2
ASXL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12421,725,126 - 21,804,745 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2421,661,059 - 21,802,815 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2421,372,658 - 21,451,415 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02422,413,734 - 22,492,956 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2422,414,540 - 22,493,033 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12421,690,505 - 21,768,566 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02421,797,741 - 21,876,696 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02422,228,633 - 22,307,459 (+)NCBIUU_Cfam_GSD_1.0
Asxl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640170,792,007 - 170,865,824 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648519,227,400 - 19,298,912 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648519,218,494 - 19,297,188 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASXL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1236,735,449 - 36,810,447 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl236,735,830 - 36,812,387 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605090,099,728 - 90,176,128 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asxl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624741188,745 - 250,142 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624741188,985 - 258,065 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ASXL1
1820 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 4 3 4 2 23 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000007930   ⟹   ENSSSCP00000007717
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1735,985,535 - 36,067,108 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000038792   ⟹   ENSSSCP00000053467
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1735,985,535 - 36,066,072 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000051049   ⟹   ENSSSCP00000059479
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1735,985,535 - 36,067,108 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000053508   ⟹   ENSSSCP00000044913
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1735,986,264 - 36,067,119 (+)Ensembl
RefSeq Acc Id: XM_021077426   ⟹   XP_020933085
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11735,985,978 - 36,067,122 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021077427   ⟹   XP_020933086
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11735,985,978 - 36,067,122 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021077428   ⟹   XP_020933087
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11735,985,978 - 36,056,076 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020933085   ⟸   XM_021077426
- Peptide Label: isoform X1
- UniProtKB: A0A287BSI2 (UniProtKB/TrEMBL),   F1S518 (UniProtKB/TrEMBL),   A0A8D1IGK8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020933086   ⟸   XM_021077427
- Peptide Label: isoform X2
- UniProtKB: A0A8D1L3X0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020933087   ⟸   XM_021077428
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSSSCP00000059479   ⟸   ENSSSCT00000051049
RefSeq Acc Id: ENSSSCP00000007717   ⟸   ENSSSCT00000007930
RefSeq Acc Id: ENSSSCP00000044913   ⟸   ENSSSCT00000053508
RefSeq Acc Id: ENSSSCP00000053467   ⟸   ENSSSCT00000038792
Protein Domains
DEUBAD   HTH HARE-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007248 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015061550 UniProtKB/TrEMBL
  ENSSSCG00025060830 UniProtKB/TrEMBL
  ENSSSCG00030055142 UniProtKB/TrEMBL
  ENSSSCG00035066977 UniProtKB/TrEMBL
  ENSSSCG00040011382 UniProtKB/TrEMBL
  ENSSSCG00045027462 UniProtKB/TrEMBL
  ENSSSCG00050028898 UniProtKB/TrEMBL
  ENSSSCG00055012859 UniProtKB/TrEMBL
  ENSSSCG00060056542 UniProtKB/TrEMBL
  ENSSSCG00065072478 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007930.4 UniProtKB/TrEMBL
  ENSSSCT00000038792.2 UniProtKB/TrEMBL
  ENSSSCT00000051049 ENTREZGENE
  ENSSSCT00000051049.2 UniProtKB/TrEMBL
  ENSSSCT00000053508 ENTREZGENE
  ENSSSCT00000053508.3 UniProtKB/TrEMBL
  ENSSSCT00015082467.1 UniProtKB/TrEMBL
  ENSSSCT00015082703.1 UniProtKB/TrEMBL
  ENSSSCT00015083058.1 UniProtKB/TrEMBL
  ENSSSCT00025083368.1 UniProtKB/TrEMBL
  ENSSSCT00025083752.1 UniProtKB/TrEMBL
  ENSSSCT00025084057.1 UniProtKB/TrEMBL
  ENSSSCT00030076901.1 UniProtKB/TrEMBL
  ENSSSCT00030076931.1 UniProtKB/TrEMBL
  ENSSSCT00030076967.1 UniProtKB/TrEMBL
  ENSSSCT00035090360.1 UniProtKB/TrEMBL
  ENSSSCT00035090377.1 UniProtKB/TrEMBL
  ENSSSCT00035090414.1 UniProtKB/TrEMBL
  ENSSSCT00040014904.1 UniProtKB/TrEMBL
  ENSSSCT00040015233.1 UniProtKB/TrEMBL
  ENSSSCT00040015300.1 UniProtKB/TrEMBL
  ENSSSCT00045046877.1 UniProtKB/TrEMBL
  ENSSSCT00045047150.1 UniProtKB/TrEMBL
  ENSSSCT00045047279.1 UniProtKB/TrEMBL
  ENSSSCT00050038860.1 UniProtKB/TrEMBL
  ENSSSCT00050038868.1 UniProtKB/TrEMBL
  ENSSSCT00050038875.1 UniProtKB/TrEMBL
  ENSSSCT00055025383.1 UniProtKB/TrEMBL
  ENSSSCT00055025554.1 UniProtKB/TrEMBL
  ENSSSCT00055025631.1 UniProtKB/TrEMBL
  ENSSSCT00060077017.1 UniProtKB/TrEMBL
  ENSSSCT00060077029.1 UniProtKB/TrEMBL
  ENSSSCT00060077039.1 UniProtKB/TrEMBL
  ENSSSCT00065099665.1 UniProtKB/TrEMBL
  ENSSSCT00065099688.1 UniProtKB/TrEMBL
  ENSSSCT00065099712.1 UniProtKB/TrEMBL
InterPro ASX-like_PHD UniProtKB/TrEMBL
  ASX/ASX-like UniProtKB/TrEMBL
  ASXH UniProtKB/TrEMBL
  DEUBAD_dom UniProtKB/TrEMBL
  HB1/Asxl_HTH UniProtKB/TrEMBL
NCBI Gene ASXL1 ENTREZGENE
PANTHER PTHR13578 UniProtKB/TrEMBL
  PTHR13578:SF19 UniProtKB/TrEMBL
Pfam ASXH UniProtKB/TrEMBL
  HARE-HTH UniProtKB/TrEMBL
  PHD_3 UniProtKB/TrEMBL
PROSITE DEUBAD UniProtKB/TrEMBL
  HTH_HARE UniProtKB/TrEMBL
UniProt A0A287ALX5_PIG UniProtKB/TrEMBL
  A0A287BAV0_PIG UniProtKB/TrEMBL
  A0A287BSI2 ENTREZGENE
  A0A8D0PKW1_PIG UniProtKB/TrEMBL
  A0A8D0PLF9_PIG UniProtKB/TrEMBL
  A0A8D0PM02_PIG UniProtKB/TrEMBL
  A0A8D0STS9_PIG UniProtKB/TrEMBL
  A0A8D1AV16_PIG UniProtKB/TrEMBL
  A0A8D1AXD1_PIG UniProtKB/TrEMBL
  A0A8D1IBW7_PIG UniProtKB/TrEMBL
  A0A8D1IGK8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1L3X0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TC00_PIG UniProtKB/TrEMBL
  A0A8D2A5R0_PIG UniProtKB/TrEMBL
  F1S518 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287BSI2 UniProtKB/TrEMBL
VGNC ID VGNC:95881 ENTREZGENE