PIWIL1 (piwi like RNA-mediated gene silencing 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: PIWIL1 (piwi like RNA-mediated gene silencing 1) Sus scrofa
Analyze
Symbol: PIWIL1
Name: piwi like RNA-mediated gene silencing 1 (Ensembl:piwi like RNA-mediated silencing 1)
RGD ID: 14216178
Description: ENCODES a protein that exhibits mRNA binding (inferred); mRNA cap binding complex binding (inferred); nucleic acid binding (inferred); INVOLVED IN spermatogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); substance-related disorder (ortholog); FOUND IN chromatoid body (inferred); cytoplasm (inferred); dense body (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: piwi-like 1; piwi-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1424,729,113 - 24,760,320 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11424,729,346 - 24,760,056 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21426,192,428 - 26,219,126 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatoid body  (IEA)
cytoplasm  (IEA)
dense body  (IEA)
nucleus  (IBA,IEA)
P granule  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:20454920   PMID:22301074   PMID:22952772   PMID:30032202  


Genomics

Comparative Map Data
PIWIL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1424,729,113 - 24,760,320 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11424,729,346 - 24,760,056 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21426,192,428 - 26,219,126 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIWIL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812130,337,887 - 130,426,260 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12130,337,887 - 130,372,637 (+)EnsemblGRCh38hg38GRCh38
GRCh3712130,822,432 - 130,857,182 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612129,388,567 - 129,422,826 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412129,347,515 - 129,381,747NCBI
Celera12130,436,876 - 130,471,363 (+)NCBICelera
Cytogenetic Map12q24.33NCBI
HuRef12127,807,883 - 127,841,997 (+)NCBIHuRef
CHM1_112130,643,298 - 130,677,747 (+)NCBICHM1_1
T2T-CHM13v2.012130,374,979 - 130,463,542 (+)NCBIT2T-CHM13v2.0
Piwil1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395128,813,135 - 128,832,538 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5128,779,588 - 128,832,538 (+)EnsemblGRCm39 Ensembl
GRCm385128,736,071 - 128,755,474 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5128,702,524 - 128,755,474 (+)EnsemblGRCm38mm10GRCm38
MGSCv375129,242,121 - 129,261,349 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365129,050,954 - 129,070,182 (+)NCBIMGSCv36mm8
Celera5125,768,204 - 125,787,427 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map567.86NCBI
Piwil1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81233,585,747 - 33,606,715 (-)NCBIGRCr8
mRatBN7.21227,949,743 - 27,970,645 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1227,949,744 - 27,970,580 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1229,089,050 - 29,109,905 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01229,699,619 - 29,720,472 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01228,758,393 - 28,779,257 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01231,608,641 - 31,629,961 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1231,609,053 - 31,629,881 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01233,532,887 - 33,553,834 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41229,015,659 - 29,036,491 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11228,880,311 - 28,896,981 (-)NCBI
Celera1229,643,476 - 29,664,308 (-)NCBICelera
Cytogenetic Map12q13NCBI
Piwil1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554821,435,925 - 1,450,857 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554821,435,925 - 1,451,067 (-)NCBIChiLan1.0ChiLan1.0
PIWIL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210138,398,086 - 138,433,186 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112138,394,605 - 138,429,705 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012127,951,178 - 127,986,173 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112132,169,820 - 132,199,374 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12132,169,820 - 132,199,374 (+)Ensemblpanpan1.1panPan2
PIWIL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1261,760,544 - 1,791,204 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl261,761,149 - 1,791,185 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha261,959,935 - 1,990,092 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0262,003,994 - 2,034,410 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl262,003,999 - 2,030,793 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1261,939,796 - 1,967,791 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0262,036,317 - 2,066,550 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0261,946,080 - 1,977,165 (-)NCBIUU_Cfam_GSD_1.0
Piwil1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118123,301,659 - 123,323,561 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366601,400,212 - 1,418,744 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366601,398,640 - 1,418,865 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIWIL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111125,712,473 - 125,748,280 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11125,717,045 - 125,748,265 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037119,257,698 - 119,295,310 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Piwil1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474727,086,885 - 27,104,011 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474727,086,683 - 27,103,223 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PIWIL1
583 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system nervous system
High
Medium
Low
Below cutoff 1 2

Sequence


RefSeq Acc Id: ENSSSCT00000010688   ⟹   ENSSSCP00000010411
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1424,729,113 - 24,760,320 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000077559   ⟹   ENSSSCP00000069581
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1424,729,113 - 24,760,320 (-)Ensembl
RefSeq Acc Id: NM_001194973   ⟹   NP_001181902
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11424,730,114 - 24,756,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021072051   ⟹   XP_020927710
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11424,729,346 - 24,760,056 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021072052   ⟹   XP_020927711
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11424,729,346 - 24,760,056 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020927710   ⟸   XM_021072051
- Peptide Label: isoform X1
- UniProtKB: A0A4X1UNY0 (UniProtKB/TrEMBL),   F1RFQ4 (UniProtKB/TrEMBL),   A0A8D0TPS2 (UniProtKB/TrEMBL),   A0A8D0RSI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020927711   ⟸   XM_021072052
- Peptide Label: isoform X1
- UniProtKB: A0A4X1UNY0 (UniProtKB/TrEMBL),   F1RFQ4 (UniProtKB/TrEMBL),   A0A8D0TPS2 (UniProtKB/TrEMBL),   A0A8D0RSI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001181902   ⟸   NM_001194973
- UniProtKB: D9YJ48 (UniProtKB/TrEMBL),   A0A5G2QXH7 (UniProtKB/TrEMBL),   A0A8D0TPS2 (UniProtKB/TrEMBL),   A0A8D1F0C1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010411   ⟸   ENSSSCT00000010688
RefSeq Acc Id: ENSSSCP00000069581   ⟸   ENSSSCT00000077559
Protein Domains
PAZ   Piwi


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009749 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005043256 UniProtKB/TrEMBL
  ENSSSCG00015073201 UniProtKB/TrEMBL
  ENSSSCG00025035713 UniProtKB/TrEMBL
  ENSSSCG00030055992 UniProtKB/TrEMBL
  ENSSSCG00035077931 UniProtKB/TrEMBL
  ENSSSCG00040051587 UniProtKB/TrEMBL
  ENSSSCG00045031910 UniProtKB/TrEMBL
  ENSSSCG00050059211 UniProtKB/TrEMBL
  ENSSSCG00055022465 UniProtKB/TrEMBL
  ENSSSCG00060057018 UniProtKB/TrEMBL
  ENSSSCG00065003663 UniProtKB/TrEMBL
  ENSSSCG00070018769 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010688 ENTREZGENE
  ENSSSCT00000010688.5 UniProtKB/TrEMBL
  ENSSSCT00000077559.2 UniProtKB/TrEMBL
  ENSSSCT00005069782.1 UniProtKB/TrEMBL
  ENSSSCT00005069808.1 UniProtKB/TrEMBL
  ENSSSCT00005069829.1 UniProtKB/TrEMBL
  ENSSSCT00015098306.1 UniProtKB/TrEMBL
  ENSSSCT00025048692.1 UniProtKB/TrEMBL
  ENSSSCT00030078028.1 UniProtKB/TrEMBL
  ENSSSCT00035106241.1 UniProtKB/TrEMBL
  ENSSSCT00040069801.1 UniProtKB/TrEMBL
  ENSSSCT00040069905.1 UniProtKB/TrEMBL
  ENSSSCT00045054462.1 UniProtKB/TrEMBL
  ENSSSCT00050080672.1 UniProtKB/TrEMBL
  ENSSSCT00055044108.1 UniProtKB/TrEMBL
  ENSSSCT00060077690.1 UniProtKB/TrEMBL
  ENSSSCT00065005000.1 UniProtKB/TrEMBL
  ENSSSCT00070037093.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.10 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
  paz domain UniProtKB/TrEMBL
InterPro ArgoL1 UniProtKB/TrEMBL
  GAGE UniProtKB/TrEMBL
  PAZ_dom UniProtKB/TrEMBL
  PAZ_dom_sf UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
  RNaseH-like_sf UniProtKB/TrEMBL
  RNaseH_sf UniProtKB/TrEMBL
KEGG Report ssc:100499508 UniProtKB/TrEMBL
NCBI Gene PIWIL1 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C UniProtKB/TrEMBL
  PTHR22891:SF46 UniProtKB/TrEMBL
Pfam ArgoL1 UniProtKB/TrEMBL
  GAGE UniProtKB/TrEMBL
  PAZ UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
PROSITE PAZ UniProtKB/TrEMBL
  PIWI UniProtKB/TrEMBL
SMART GAGE UniProtKB/TrEMBL
  PAZ UniProtKB/TrEMBL
  Piwi UniProtKB/TrEMBL
Superfamily-SCOP SSF101690 UniProtKB/TrEMBL
  SSF53098 UniProtKB/TrEMBL
UniProt A0A4X1UNY0 ENTREZGENE
  A0A5G2QXH7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0M1I8_PIG UniProtKB/TrEMBL
  A0A8D0RSI1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0TPS2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1F0C1 ENTREZGENE, UniProtKB/TrEMBL
  D9YJ48 ENTREZGENE, UniProtKB/TrEMBL
  F1RFQ4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1UNY0 UniProtKB/TrEMBL
VGNC ID VGNC:98197 ENTREZGENE