TMEM225B (transmembrane protein 225B)

Gene: TMEM225B (transmembrane protein 225B) Sus scrofa

Analyze

Symbol:

TMEM225B

Name:

transmembrane protein 225B

RGD ID:

14214945

Description:

FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

transmembrane protein 225-like

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	6,545,622 - 6,563,389 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	6,548,011 - 6,564,364 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

TMEM225B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	6,545,622 - 6,563,389 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	6,548,011 - 6,564,364 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TMEM225B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	99,598,058 - 99,611,045 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	99,598,267 - 99,611,045 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	99,195,890 - 99,208,668 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	7	q22.1	NCBI
HuRef	7	93,832,266 - 93,844,820 (+)	NCBI		HuRef
CHM1_1	7	99,125,993 - 99,138,550 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	100,837,398 - 100,850,372 (+)	NCBI		T2T-CHM13v2.0

Tmem225b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	15,247,462 - 15,258,547 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955460	15,208,004 - 15,258,482 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMEM225B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	117,417,876 - 117,470,764 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	165,682,511 - 165,732,962 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	91,533,698 - 91,584,347 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	105,035,967 - 105,086,246 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	105,073,327 - 105,086,034 (+)	Ensembl	panpan1.1		panPan2

TMEM225B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	9,950,571 - 9,977,331 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	9,950,572 - 9,959,738 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	11,576,455 - 11,603,211 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	9,950,555 - 9,977,298 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	9,950,556 - 9,976,910 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	9,813,938 - 9,840,664 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	9,798,588 - 9,825,530 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	10,032,977 - 10,059,929 (-)	NCBI		UU_Cfam_GSD_1.0

Tmem225b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	138,065,443 - 138,110,294 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936750	1,867,732 - 1,879,839 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM225B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	13,559,611 - 13,604,969 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	13,559,046 - 13,567,121 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666070	2,700,362 - 2,758,527 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in TMEM225B
610 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021086158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021086159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01089958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000074410 ⟹ ENSSSCP00000064147

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	3	6,545,622 - 6,563,389 (+)	Ensembl

RefSeq Acc Id:

XM_021086158 ⟹ XP_020941817

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	6,548,012 - 6,564,364 (+)	NCBI

Sequence:

show sequence

GACCCGACGGTGCCCCGCGGAGGTGGGGCCAAGGGTGGGGAGCCCAGGGGCGTGCAGAACGTTA
CCCGCTACCCGCGGGGCGTAATCTGGGGGCAGATGGCCAGGTTTTAAGGAGGACTTGGTCTCCA
GGTCGGAAAGGATGTGAGCCTGACTCGGCTGGACAGGCGGACCTGTTGGAAGCAAACTCATCAG
CAGAGCTCGGTCAGCTGTCCGGTTGAATTTGGTGCCCTGGGATGTGCCTGGCCTCTCAGAGACC
CTGGCAGGTGGAAAGCACTGTATCGTGTGATGAGTTTTTGTGTCTCTTCTCCCCAGTGGTTACC
TGTGATGCTGACTTTGGAGGACAGAGACGTGAAGTGGTTCACCTGGGCCGTGGTCTTGACCTCC
CTGGGCTACCTGCTTCTGCTGCTGGTCTCCATCTTCCCCTTCTGGGTGCGTCTTGTGAAGGACG
AGTCCCAGGAAGTGTTTTTCAGCGGCCTGTTTGAGAACTGCTTCCAGATCAAGTGCTGGAAGCC
CCGGCCCTTGTCAATTTACATCGTCCTCGGCCGCGTGTTCCTGCTGTGCGCCGTCCTCTTCTCC
TTCCTCACCGTCTTCGCCATGGTGTCCTTTGCATCTGACCTCTTTCCGGGGACCTGGAAGCACA
ACCTGGTGTCCGCCTTCATCAGCTTCCTCACAGGGGCCTGTGCCTTCCTGGCCTTGTTGCTGCA
CGCCCTGGAGATGCAGAGTCTGAGGATGAAGCCCAACCCGCCCCACTTCTCCGTGCAGTGGCCA
TACTACGCCTTGGGCTTCAGCATCCTTCTGTTTGTAGCGGCCGGTGCCATCTGCCTTGTTCGAG
AAACAACCTGCCTTTGCTGCCATTGGTTGCTCATTCCCCCAAACACTGGGGAGATCCAGGGGAT
CGCTCACCTGGAGAGTCTGGGAGGAGACCTGAGCTCCATGCAGAAGGAGACACTGCTGAAGGGG
GAGACCGCGATCTAGACCGGGAGAGCCTGGGCTCTGCCCTCCATCAGGCTGCGTGAGCGCGCGC
GTCTCCGTGTAAGTGGCTCCCTGTCTCCGCTGAGCTTGGCCACGTTTGCCAAGGCGCTTGAGGG
TCTCACCAAGCCGCCGCGTCCCCATCCTCACAGCCATTCTGTCTTGCTTGTGTTTGACATTTGT
TAAAGGTTTTCTGAATGTTTCAGAGATTCCTGAGTTCCTTTTTATTCTATTGGGTTTTTTTTAG
GACAGGCATCATCAATTAAAGGATGACTACGTCTTCATCCAGACCTCAGCACCAGCCTGCAGTC
TGGGGGCGGGCAGGGGGGATAGGCACAATGACCAAGTGACGTGAGCTGCTGTCAAACAAGAACT
GAACAGCACAGAACCACAGCAGACGGTGTCTGTGTTCAGGACATTAAAAGGAAAAGGTGATGTC
CTCAGCCAAAAGCGTGACTCCGCTCGGGAAGCTCTGCTCACGTGTGTTGGCGGGAAGGGGGTGG
TTAGAGGTGAAAGCTTCCCCAAGGCTGAGCTCCCAGGCCTGGCAGTGTGAGCCCATACGCTGGG
GAAAGAGTAGGCAAGTCAGCCGGTCGACATACCAGCAACCCATCCTTTCCCTGGAGCCAGAGGG
CTTCTGTGGGCACCTCTAAAGTGCCCCCCTTCGCAGTCCTGAAGGAGCTTTCAGACTGCGTATA
GCTGGGAGGTACCCATGCTTTGGGGCAGTGGAGAGGCTGGAACTCCCTGGCCTCATACCCACCC
TTCATCTCAACAATGCTGAGTAACTGCGCCTCCCCATTTTCCTTTCTAAAGAACGTGCATAGGG
AGTTCCCATCATGGTGCAGCTGAAATGAATCCGACTAGGAACCATGAGGTTGCAGGTTCGATCC
CTGGCCTCACTCAGTGGGTTAAGGATCTGGCATTGCCGTGAGCTGTGGTATAGGCCCGCAGCTA
TAGCTCCAATTAGGCCCCTAGCCTGGGAAACTCCATATGCCACAGGTGTGGCCCTAAAAAGCCA
AAAAAAAAAAAAAGAAAAAAGAAGAGAAAAAAAAGGTTGGCCTTGTGCAGTACACCATGGGGTG
TGTGAGGTATCAAAATCACTTTCTGTGCTCCGGAGGCTCACACCCAAGCAGAAAAGCTAAGCAG
AAACTCCCCGAAAACAAGCGCTAAGTGTTTTA

hide sequence

RefSeq Acc Id:

XM_021086159 ⟹ XP_020941818

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	6,548,011 - 6,564,364 (+)	NCBI

Sequence:

show sequence

AGACCCGACGGTGCCCCGCGGAGGTGGGGCCAAGGGTGGGGAGCCCAGGGGCGTGCAGAACGTT
ACCCGCTACCCGCGGGGCGTAATCTGGGGGCAGATGGCCAGGTTTTAAGGAGGACTTGGTCTCC
AGGTCGGAAAGGATGTGAGCCTGACTCGGCTGGACAGGCGGACCTGTTGGAAGCAAACTCATCA
GCAGAGGTGATGCTGACTTTGGAGGACAGAGACGTGAAGTGGTTCACCTGGGCCGTGGTCTTGA
CCTCCCTGGGCTACCTGCTTCTGCTGCTGGTCTCCATCTTCCCCTTCTGGGTGCGTCTTGTGAA
GGACGAGTCCCAGGAAGTGTTTTTCAGCGGCCTGTTTGAGAACTGCTTCCAGATCAAGTGCTGG
AAGCCCCGGCCCTTGTCAATTTACATCGTCCTCGGCCGCGTGTTCCTGCTGTGCGCCGTCCTCT
TCTCCTTCCTCACCGTCTTCGCCATGGTGTCCTTTGCATCTGACCTCTTTCCGGGGACCTGGAA
GCACAACCTGGTGTCCGCCTTCATCAGCTTCCTCACAGGGGCCTGTGCCTTCCTGGCCTTGTTG
CTGCACGCCCTGGAGATGCAGAGTCTGAGGATGAAGCCCAACCCGCCCCACTTCTCCGTGCAGT
GGCCATACTACGCCTTGGGCTTCAGCATCCTTCTGTTTGTAGCGGCCGGTGCCATCTGCCTTGT
TCGAGAAACAACCTGCCTTTGCTGCCATTGGTTGCTCATTCCCCCAAACACTGGGGAGATCCAG
GGGATCGCTCACCTGGAGAGTCTGGGAGGAGACCTGAGCTCCATGCAGAAGGAGACACTGCTGA
AGGGGGAGACCGCGATCTAGACCGGGAGAGCCTGGGCTCTGCCCTCCATCAGGCTGCGTGAGCG
CGCGCGTCTCCGTGTAAGTGGCTCCCTGTCTCCGCTGAGCTTGGCCACGTTTGCCAAGGCGCTT
GAGGGTCTCACCAAGCCGCCGCGTCCCCATCCTCACAGCCATTCTGTCTTGCTTGTGTTTGACA
TTTGTTAAAGGTTTTCTGAATGTTTCAGAGATTCCTGAGTTCCTTTTTATTCTATTGGGTTTTT
TTTAGGACAGGCATCATCAATTAAAGGATGACTACGTCTTCATCCAGACCTCAGCACCAGCCTG
CAGTCTGGGGGCGGGCAGGGGGGATAGGCACAATGACCAAGTGACGTGAGCTGCTGTCAAACAA
GAACTGAACAGCACAGAACCACAGCAGACGGTGTCTGTGTTCAGGACATTAAAAGGAAAAGGTG
ATGTCCTCAGCCAAAAGCGTGACTCCGCTCGGGAAGCTCTGCTCACGTGTGTTGGCGGGAAGGG
GGTGGTTAGAGGTGAAAGCTTCCCCAAGGCTGAGCTCCCAGGCCTGGCAGTGTGAGCCCATACG
CTGGGGAAAGAGTAGGCAAGTCAGCCGGTCGACATACCAGCAACCCATCCTTTCCCTGGAGCCA
GAGGGCTTCTGTGGGCACCTCTAAAGTGCCCCCCTTCGCAGTCCTGAAGGAGCTTTCAGACTGC
GTATAGCTGGGAGGTACCCATGCTTTGGGGCAGTGGAGAGGCTGGAACTCCCTGGCCTCATACC
CACCCTTCATCTCAACAATGCTGAGTAACTGCGCCTCCCCATTTTCCTTTCTAAAGAACGTGCA
TAGGGAGTTCCCATCATGGTGCAGCTGAAATGAATCCGACTAGGAACCATGAGGTTGCAGGTTC
GATCCCTGGCCTCACTCAGTGGGTTAAGGATCTGGCATTGCCGTGAGCTGTGGTATAGGCCCGC
AGCTATAGCTCCAATTAGGCCCCTAGCCTGGGAAACTCCATATGCCACAGGTGTGGCCCTAAAA
AGCCAAAAAAAAAAAAAAGAAAAAAGAAGAGAAAAAAAAGGTTGGCCTTGTGCAGTACACCATG
GGGTGTGTGAGGTATCAAAATCACTTTCTGTGCTCCGGAGGCTCACACCCAAGCAGAAAAGCTA
AGCAGAAACTCCCCGAAAACAAGCGCTAAGTGTTTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020941817	(Get FASTA)	NCBI Sequence Viewer
	XP_020941818	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000064147
	ENSSSCP00000064147.2
	ENSSSCP00005007755.1
	ENSSSCP00035027825.1
	ENSSSCP00040030542.1
	ENSSSCP00045012592.1
	ENSSSCP00065005444.1
	ENSSSCP00070041409.1

RefSeq Acc Id:	XP_020941818 ⟸ XM_021086159
- Peptide Label:	isoform X2
- UniProtKB:	A0A481BRV7 (UniProtKB/TrEMBL), A0A8D0IB18 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLTLEDRDVKWFTWAVVLTSLGYLLLLLVSIFPFWVRLVKDESQEVFFSGLFENCFQIKCWKPR PLSIYIVLGRVFLLCAVLFSFLTVFAMVSFASDLFPGTWKHNLVSAFISFLTGACAFLALLLHA LEMQSLRMKPNPPHFSVQWPYYALGFSILLFVAAGAICLVRETTCLCCHWLLIPPNTGEIQGIA HLESLGGDLSSMQKETLLKGETAI hide sequence

RefSeq Acc Id:	XP_020941817 ⟸ XM_021086158
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D1H188 (UniProtKB/TrEMBL), A0A5G2QJM4 (UniProtKB/TrEMBL), A0A481BXB7 (UniProtKB/TrEMBL), A0A481BRV7 (UniProtKB/TrEMBL), A0A8D0IB18 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSFCVSSPQWLPVMLTLEDRDVKWFTWAVVLTSLGYLLLLLVSIFPFWVRLVKDESQEVFFSGL FENCFQIKCWKPRPLSIYIVLGRVFLLCAVLFSFLTVFAMVSFASDLFPGTWKHNLVSAFISFL TGACAFLALLLHALEMQSLRMKPNPPHFSVQWPYYALGFSILLFVAAGAICLVRETTCLCCHWL LIPPNTGEIQGIAHLESLGGDLSSMQKETLLKGETAI hide sequence

RefSeq Acc Id:

ENSSSCP00000064147 ⟸ ENSSSCT00000074410

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000043842	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005008632	UniProtKB/TrEMBL
	ENSSSCG00035051614	UniProtKB/TrEMBL
	ENSSSCG00040052916	UniProtKB/TrEMBL
	ENSSSCG00045010753	UniProtKB/TrEMBL
	ENSSSCG00065010003	UniProtKB/TrEMBL
	ENSSSCG00070024571	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000074410	ENTREZGENE
	ENSSSCT00000074410.2	UniProtKB/TrEMBL
	ENSSSCT00005013123.1	UniProtKB/TrEMBL
	ENSSSCT00035068742.1	UniProtKB/TrEMBL
	ENSSSCT00040071579.1	UniProtKB/TrEMBL
	ENSSSCT00045018266.1	UniProtKB/TrEMBL
	ENSSSCT00065013311.1	UniProtKB/TrEMBL
	ENSSSCT00070049031.1	UniProtKB/TrEMBL
InterPro	TMEM225	UniProtKB/TrEMBL
NCBI Gene	TMEM225B	ENTREZGENE
PANTHER	PTHR36477	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 225B	UniProtKB/TrEMBL
UniProt	A0A481BRV7	ENTREZGENE, UniProtKB/TrEMBL
	A0A481BXB7	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1VDT5_PIG	UniProtKB/TrEMBL
	A0A5G2QJM4	ENTREZGENE
	A0A8D0IB18	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1H188	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A5G2QJM4	UniProtKB/TrEMBL
VGNC ID	VGNC:110726	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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