PTPRG (protein tyrosine phosphatase receptor type G) - Rat Genome Database

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Gene: PTPRG (protein tyrosine phosphatase receptor type G) Sus scrofa
Analyze
Symbol: PTPRG
Name: protein tyrosine phosphatase receptor type G
RGD ID: 14214216
Description: ENCODES a protein that exhibits identical protein binding (inferred); protein tyrosine phosphatase activity (inferred); INVOLVED IN brain development (ortholog); negative regulation of neuron projection development (ortholog); regulation of homophilic cell adhesion (ortholog); ASSOCIATED WITH Stomach Neoplasms (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: receptor-type tyrosine-protein phosphatase gamma
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1343,548,770 - 43,869,270 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11343,132,786 - 43,869,843 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21347,543,401 - 47,873,302 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
PTPRG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1343,548,770 - 43,869,270 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11343,132,786 - 43,869,843 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21347,543,401 - 47,873,302 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl361,561,569 - 62,297,609 (+)EnsemblGRCh38hg38GRCh38
GRCh38361,561,571 - 62,297,609 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37361,547,245 - 62,283,284 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36361,522,285 - 62,254,738 (+)NCBINCBI36hg18NCBI36
Build 34361,522,284 - 62,254,737NCBI
Celera361,560,149 - 62,297,663 (+)NCBI
Cytogenetic Map3p14.2NCBI
HuRef361,645,865 - 62,378,614 (+)NCBIHuRef
CHM1_1361,497,665 - 62,231,710 (+)NCBICHM1_1
Ptprg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391410,227,722 - 10,916,341 (-)NCBIGRCm39mm39
GRCm381411,553,440 - 12,242,041 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1411,553,532 - 12,242,041 (+)EnsemblGRCm38mm10GRCm38
MGSCv371412,386,067 - 13,074,553 (+)NCBIGRCm37mm9NCBIm37
MGSCv361410,347,279 - 11,031,196 (+)NCBImm8
Celera147,168,551 - 7,867,137 (+)NCBICelera
Celera1415,457,844 - 15,462,854 (-)NCBICelera
Cytogenetic Map14A1NCBI
cM Map146.33NCBI
Ptprg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21512,872,284 - 13,552,186 (-)NCBI
Rnor_6.0 Ensembl1512,926,167 - 13,228,607 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01512,926,056 - 13,633,839 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01516,953,275 - 17,647,626 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41514,449,352 - 15,130,760 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11514,449,351 - 14,966,931 (-)NCBI
Celera1512,868,965 - 13,547,381 (-)NCBICelera
Cytogenetic Map15p16NCBI
Ptprg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555173,676,342 - 4,352,909 (-)NCBIChiLan1.0ChiLan1.0
PTPRG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1362,876,655 - 63,608,175 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl362,877,232 - 63,604,275 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0361,487,734 - 62,221,149 (+)NCBIMhudiblu_PPA_v0panPan3
PTPRG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12028,777,306 - 29,481,097 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2028,778,386 - 29,481,145 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2028,705,294 - 29,408,229 (-)NCBI
ROS_Cfam_1.02029,011,902 - 29,715,647 (-)NCBI
UMICH_Zoey_3.12028,497,557 - 29,200,144 (-)NCBI
UNSW_CanFamBas_1.02028,855,762 - 29,559,818 (-)NCBI
UU_Cfam_GSD_1.02028,955,575 - 29,659,297 (-)NCBI
Ptprg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118165,734,435 - 165,784,177 (-)NCBI
SpeTri2.0NW_0049366374,126,058 - 4,248,190 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRG
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12222,652,375 - 23,370,973 (+)NCBI
ChlSab1.1 Ensembl2223,061,935 - 23,370,960 (+)Ensembl
Ptprg
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248228,378,048 - 8,942,342 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 3 1 15 2 3
Low 8 4 4 2 8 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021070767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021070768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021070769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021070771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021070772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021070773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021070774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021070775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021070776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF386795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK235799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU467099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU468836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU481219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FP565150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01067403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000012568   ⟹   ENSSSCP00000012239
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1343,548,770 - 43,869,269 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000042778   ⟹   ENSSSCP00000056910
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1343,548,770 - 43,869,270 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000084162   ⟹   ENSSSCP00000070565
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1343,563,141 - 43,869,269 (+)Ensembl
RefSeq Acc Id: XM_021070767   ⟹   XP_020926426
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11343,133,688 - 43,869,843 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021070768   ⟹   XP_020926427
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11343,133,686 - 43,869,843 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021070769   ⟹   XP_020926428
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11343,133,691 - 43,869,843 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021070771   ⟹   XP_020926430
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11343,132,786 - 43,869,843 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021070772   ⟹   XP_020926431
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11343,132,786 - 43,869,843 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021070773   ⟹   XP_020926432
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11343,132,787 - 43,869,843 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021070774   ⟹   XP_020926433
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11343,213,446 - 43,869,843 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021070775   ⟹   XP_020926434
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11343,236,207 - 43,869,843 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021070776   ⟹   XP_020926435
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11343,269,811 - 43,869,843 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020926431   ⟸   XM_021070772
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020926430   ⟸   XM_021070771
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020926432   ⟸   XM_021070773
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_020926427   ⟸   XM_021070768
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020926426   ⟸   XM_021070767
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020926428   ⟸   XM_021070769
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020926433   ⟸   XM_021070774
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020926434   ⟸   XM_021070775
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020926435   ⟸   XM_021070776
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: ENSSSCP00000070565   ⟸   ENSSSCT00000084162
RefSeq Acc Id: ENSSSCP00000056910   ⟸   ENSSSCT00000042778
RefSeq Acc Id: ENSSSCP00000012239   ⟸   ENSSSCT00000012568

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011485 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070024229 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000012239 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000056910 UniProtKB/TrEMBL
  ENSSSCP00000070565 UniProtKB/TrEMBL
  ENSSSCP00070040925 UniProtKB/TrEMBL
  ENSSSCP00070040928 UniProtKB/TrEMBL
  ENSSSCP00070040931 UniProtKB/TrEMBL
  ENSSSCP00070040936 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012568 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000042778 UniProtKB/TrEMBL
  ENSSSCT00000084162 UniProtKB/TrEMBL
  ENSSSCT00070048463 UniProtKB/TrEMBL
  ENSSSCT00070048470 UniProtKB/TrEMBL
  ENSSSCT00070048474 UniProtKB/TrEMBL
  ENSSSCT00070048480 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.10.200.10 UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/TrEMBL
InterPro Alpha_CARP_receptor-type UniProtKB/TrEMBL
  CA_dom UniProtKB/TrEMBL
  CA_dom_sf UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  PTPase_domain UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/TrEMBL
NCBI Gene PTPRG ENTREZGENE
Pfam Carb_anhydrase UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/TrEMBL
PRINTS PRTYPHPHTASE UniProtKB/TrEMBL
PROSITE ALPHA_CA_2 UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/TrEMBL
SMART Carb_anhydrase UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  PTPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
  SSF51069 UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
UniProt A0A287BL66_PIG UniProtKB/TrEMBL
  A0A4X1VCL2_PIG UniProtKB/TrEMBL
  A0A4X1VGI8_PIG UniProtKB/TrEMBL
  A0A4X1VGL9_PIG UniProtKB/TrEMBL
  A0A4X1VHK0_PIG UniProtKB/TrEMBL
  A0A5G2RH05_PIG UniProtKB/TrEMBL
  F1SGH0_PIG UniProtKB/TrEMBL
  Q8MJM5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:91988 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-19 PTPRG  protein tyrosine phosphatase receptor type G    protein tyrosine phosphatase, receptor type G  Symbol and/or name change 5135510 APPROVED