SLC13A2 (solute carrier family 13 member 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: SLC13A2 (solute carrier family 13 member 2) Sus scrofa
Analyze
Symbol: SLC13A2
Name: solute carrier family 13 member 2
RGD ID: 14212756
Description: ENCODES a protein that exhibits alpha-ketoglutarate transmembrane transporter activity (inferred); fumarate transmembrane transporter activity (inferred); sodium:dicarboxylate symporter activity (inferred); INVOLVED IN alpha-ketoglutarate transport (inferred); cellular response to lithium ion (inferred); fumarate transport (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN apical plasma membrane (inferred); membrane (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,730,773 - 44,754,468 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,733,038 - 44,754,476 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21885,939 - 110,231 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC13A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,730,773 - 44,754,468 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,733,038 - 44,754,476 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21885,939 - 110,231 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC13A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381728,473,644 - 28,497,781 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1728,473,293 - 28,497,781 (+)EnsemblGRCh38hg38GRCh38
GRCh371726,800,662 - 26,824,799 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361723,824,791 - 23,848,514 (+)NCBINCBI36Build 36hg18NCBI36
Build 341723,824,790 - 23,848,514NCBI
Celera1723,659,792 - 23,683,926 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1723,009,855 - 23,034,040 (+)NCBIHuRef
CHM1_11726,864,116 - 26,888,251 (+)NCBICHM1_1
T2T-CHM13v2.01729,416,661 - 29,440,798 (+)NCBIT2T-CHM13v2.0
Slc13a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,288,102 - 78,313,107 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1178,287,913 - 78,313,043 (-)EnsemblGRCm39 Ensembl
GRCm381178,397,276 - 78,422,281 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,397,087 - 78,422,217 (-)EnsemblGRCm38mm10GRCm38
MGSCv371178,210,778 - 78,235,687 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361178,213,471 - 78,238,380 (-)NCBIMGSCv36mm8
Celera1188,029,358 - 88,054,267 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Slc13a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81063,789,874 - 63,817,441 (-)NCBIGRCr8
mRatBN7.21063,291,813 - 63,319,127 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1063,291,815 - 63,319,127 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1067,924,039 - 67,951,806 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01067,429,370 - 67,457,141 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01062,900,599 - 62,928,370 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01065,664,665 - 65,692,046 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,664,667 - 65,692,023 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01065,951,596 - 65,979,408 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,503,787 - 64,531,097 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11064,517,411 - 64,544,720 (-)NCBI
Celera1062,268,477 - 62,295,791 (-)NCBICelera
Cytogenetic Map10q25NCBI
Slc13a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,648,703 - 4,674,466 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,650,356 - 4,674,441 (-)NCBIChiLan1.0ChiLan1.0
SLC13A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21935,962,397 - 35,986,520 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11737,842,666 - 37,866,768 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01728,278,381 - 28,302,318 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11728,781,200 - 28,805,268 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,781,200 - 28,805,268 (-)Ensemblpanpan1.1panPan2
SLC13A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,689,296 - 42,713,209 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl942,688,468 - 42,712,678 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha941,845,952 - 41,869,885 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0943,508,195 - 43,532,099 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl943,507,503 - 43,532,562 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1942,291,351 - 42,315,214 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0942,583,710 - 42,607,627 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0942,661,122 - 42,685,125 (+)NCBIUU_Cfam_GSD_1.0
Slc13a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,807,531 - 41,830,571 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365384,685,538 - 4,708,251 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365384,685,538 - 4,708,049 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC13A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11622,241,878 - 22,266,959 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1622,242,514 - 22,267,036 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660757,860,797 - 7,885,832 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc13a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247861,067,881 - 1,092,685 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247861,068,013 - 1,091,868 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC13A2
553 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium 4 2
Low 1 1 1 1 2
Below cutoff 1 1 2 6 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000019335   ⟹   ENSSSCP00000018822
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1244,730,773 - 44,754,468 (+)Ensembl
RefSeq Acc Id: NM_001244717   ⟹   NP_001231646
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11244,733,038 - 44,754,476 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001231646   ⟸   NM_001244717
- UniProtKB: A0A480QMV3 (UniProtKB/TrEMBL),   A0A4X1TMC4 (UniProtKB/TrEMBL),   F1RNC8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000018822   ⟸   ENSSSCT00000019335


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017763 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015021778 UniProtKB/TrEMBL
  ENSSSCG00025058587 UniProtKB/TrEMBL
  ENSSSCG00030060764 UniProtKB/TrEMBL
  ENSSSCG00040049945 UniProtKB/TrEMBL
  ENSSSCG00045038297 UniProtKB/TrEMBL
  ENSSSCG00050002466 UniProtKB/TrEMBL
  ENSSSCG00055001193 UniProtKB/TrEMBL
  ENSSSCG00060075434 UniProtKB/TrEMBL
  ENSSSCG00065075100 UniProtKB/TrEMBL
  ENSSSCG00070011220 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019335 ENTREZGENE
  ENSSSCT00000019335.4 UniProtKB/TrEMBL
  ENSSSCT00015028761.1 UniProtKB/TrEMBL
  ENSSSCT00015028816.1 UniProtKB/TrEMBL
  ENSSSCT00015028935.1 UniProtKB/TrEMBL
  ENSSSCT00015029056.1 UniProtKB/TrEMBL
  ENSSSCT00025080207.1 UniProtKB/TrEMBL
  ENSSSCT00025080395.1 UniProtKB/TrEMBL
  ENSSSCT00030084904.1 UniProtKB/TrEMBL
  ENSSSCT00030084939.1 UniProtKB/TrEMBL
  ENSSSCT00040067389.1 UniProtKB/TrEMBL
  ENSSSCT00040067487.1 UniProtKB/TrEMBL
  ENSSSCT00045066363.1 UniProtKB/TrEMBL
  ENSSSCT00045066393.1 UniProtKB/TrEMBL
  ENSSSCT00050003123.1 UniProtKB/TrEMBL
  ENSSSCT00050003133.1 UniProtKB/TrEMBL
  ENSSSCT00055002108.1 UniProtKB/TrEMBL
  ENSSSCT00060103279.1 UniProtKB/TrEMBL
  ENSSSCT00060103319.1 UniProtKB/TrEMBL
  ENSSSCT00065103851.1 UniProtKB/TrEMBL
  ENSSSCT00065103959.1 UniProtKB/TrEMBL
  ENSSSCT00070021845.1 UniProtKB/TrEMBL
InterPro SLC13A/DASS UniProtKB/TrEMBL
KEGG Report ssc:100512737 UniProtKB/TrEMBL
NCBI Gene SLC13A2 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 13 MEMBER UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 13 MEMBER 2 UniProtKB/TrEMBL
Pfam Na_sulph_symp UniProtKB/TrEMBL
UniProt A0A480QMV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TMC4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0N240_PIG UniProtKB/TrEMBL
  A0A8D1WUH0_PIG UniProtKB/TrEMBL
  F1RNC8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92930 ENTREZGENE