LOC110257841 (histone H2A-Bbd type 1-like) - Rat Genome Database

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Gene: LOC110257841 (histone H2A-Bbd type 1-like) Sus scrofa
Analyze
No known orthologs.
Symbol: LOC110257841
Name: histone H2A-Bbd type 1-like
RGD ID: 14209426
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); FOUND IN chromosome (inferred); nucleosome (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X33,299,003 - 33,299,753 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
nucleosome  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC110257841
36 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021080615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021080615   ⟹   XP_020936274
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X33,299,003 - 33,299,753 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020936274 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000076983
  ENSSSCP00040035306.1
Reference Protein Sequences
RefSeq Acc Id: XP_020936274   ⟸   XM_021080615
- UniProtKB: A0A8W4FCJ2 (UniProtKB/TrEMBL),   A0A8D1FFJ1 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000057385 ENTREZGENE
  ENSSSCG00040059787 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000103496 ENTREZGENE
  ENSSSCT00040081273.1 UniProtKB/TrEMBL
Gene3D-CATH Histone, subunit A UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
NCBI Gene LOC110257841 ENTREZGENE
PANTHER HISTONE H2A UniProtKB/TrEMBL
  HISTONE H2A UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PRINTS HISTONEH2A UniProtKB/TrEMBL
SMART H2A UniProtKB/TrEMBL
Superfamily-SCOP Histone-fold UniProtKB/TrEMBL
UniProt A0A8D1FFJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FCJ2 ENTREZGENE