TNFAIP6 (TNF alpha induced protein 6) - Rat Genome Database

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Gene: TNFAIP6 (TNF alpha induced protein 6) Sus scrofa
Analyze
Symbol: TNFAIP6
Name: TNF alpha induced protein 6
RGD ID: 14207585
Description: ENCODES a protein that exhibits hyaluronic acid binding (inferred); INVOLVED IN ovulation (ortholog); positive regulation of cell migration (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); allergic contact dermatitis (ortholog); Arsenic Poisoning (ortholog); FOUND IN extracellular space (ortholog); INTERACTS WITH N-acetyl-L-cysteine; zearalenone
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: tumor necrosis factor, alpha-induced protein 6; tumor necrosis factor-inducible gene 6 protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15862,013 - 881,461 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115862,013 - 881,352 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215157,132,380 - 157,151,740 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:18256330   PMID:19194062  


Genomics

Comparative Map Data
TNFAIP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15862,013 - 881,461 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115862,013 - 881,352 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215157,132,380 - 157,151,740 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TNFAIP6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2151,357,592 - 151,380,046 (+)EnsemblGRCh38hg38GRCh38
GRCh382151,357,592 - 151,380,046 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372152,214,106 - 152,236,560 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362151,922,351 - 151,944,806 (+)NCBINCBI36hg18NCBI36
Build 342152,039,612 - 152,062,067NCBI
Celera2145,828,376 - 145,850,827 (+)NCBI
Cytogenetic Map2q23.3NCBI
HuRef2144,110,453 - 144,133,100 (+)NCBIHuRef
CHM1_12152,219,924 - 152,242,420 (+)NCBICHM1_1
Tnfaip6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39251,928,125 - 51,946,693 (+)NCBIGRCm39mm39
GRCm39 Ensembl251,928,021 - 51,946,698 (+)Ensembl
GRCm38252,038,113 - 52,056,681 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl252,038,009 - 52,056,686 (+)EnsemblGRCm38mm10GRCm38
MGSCv37251,893,633 - 51,912,201 (+)NCBIGRCm37mm9NCBIm37
MGSCv36251,860,122 - 51,878,690 (+)NCBImm8
Celera253,762,777 - 53,783,057 (+)NCBICelera
Cytogenetic Map2C1.1NCBI
Tnfaip6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2336,502,250 - 36,521,652 (+)NCBI
Rnor_6.0 Ensembl337,545,238 - 37,564,699 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0337,545,238 - 37,564,704 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0342,649,266 - 42,663,190 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera334,646,103 - 34,665,498 (+)NCBICelera
Cytogenetic Map3q12NCBI
Tnfaip6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544016,916,055 - 16,944,190 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544016,915,952 - 16,944,375 (+)NCBIChiLan1.0ChiLan1.0
TNFAIP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B155,933,842 - 155,956,382 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B155,933,842 - 155,956,382 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B38,669,652 - 38,692,037 (+)NCBIMhudiblu_PPA_v0panPan3
TNFAIP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11952,607,598 - 52,623,799 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1952,607,713 - 52,623,811 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1952,770,629 - 52,786,812 (+)NCBI
ROS_Cfam_1.01954,118,538 - 54,134,777 (+)NCBI
UMICH_Zoey_3.11952,832,140 - 52,848,316 (+)NCBI
UNSW_CanFamBas_1.01952,902,916 - 52,919,491 (+)NCBI
UU_Cfam_GSD_1.01954,369,113 - 54,385,510 (+)NCBI
Tnfaip6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303115,472,309 - 115,488,387 (+)NCBI
SpeTri2.0NW_00493646926,129,339 - 26,145,464 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFAIP6
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11036,792,505 - 36,814,271 (+)NCBI
ChlSab1.1 Ensembl1036,792,514 - 36,814,494 (+)Ensembl
Tnfaip6
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248665,706,483 - 5,758,666 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2
Low 10 4 1 5 2 21 1 1
Below cutoff 2 2 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000025487   ⟹   ENSSSCP00000020099
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl15862,013 - 881,461 (-)Ensembl
RefSeq Acc Id: NM_001159607   ⟹   NP_001153079
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.115862,013 - 881,352 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001153079 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001153079   ⟸   NM_001159607
- Peptide Label: precursor
- Sequence:
RefSeq Acc Id: ENSSSCP00000020099   ⟸   ENSSSCT00000025487
Protein Domains
CUB   Link


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023716 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000020099 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000025487 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.290 UniProtKB/TrEMBL
  3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  CUB_dom UniProtKB/TrEMBL
  Link_dom UniProtKB/TrEMBL
  Sperma_CUB_dom_sf UniProtKB/TrEMBL
NCBI Gene TNFAIP6 ENTREZGENE
Pfam CUB UniProtKB/TrEMBL
  Xlink UniProtKB/TrEMBL
PRINTS LINKMODULE UniProtKB/TrEMBL
PROSITE CUB UniProtKB/TrEMBL
  LINK_1 UniProtKB/TrEMBL
  LINK_2 UniProtKB/TrEMBL
SMART CUB UniProtKB/TrEMBL
  LINK UniProtKB/TrEMBL
Superfamily-SCOP SSF49854 UniProtKB/TrEMBL
  SSF56436 UniProtKB/TrEMBL
UniProt I3L7U2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:95544 ENTREZGENE