TMEM72 (transmembrane protein 72) - Rat Genome Database

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Gene: TMEM72 (transmembrane protein 72) Sus scrofa
Analyze
Symbol: TMEM72
Name: transmembrane protein 72
RGD ID: 14207531
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1491,144,938 - 91,169,812 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11491,144,938 - 91,170,178 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21499,622,285 - 99,643,433 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
TMEM72
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1491,144,938 - 91,169,812 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11491,144,938 - 91,170,178 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21499,622,285 - 99,643,433 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM72
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381044,911,337 - 44,937,010 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1044,911,316 - 44,937,010 (+)EnsemblGRCh38hg38GRCh38
GRCh371045,406,785 - 45,432,458 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361044,726,770 - 44,750,648 (+)NCBINCBI36Build 36hg18NCBI36
Celera1041,409,939 - 41,433,817 (+)NCBICelera
Cytogenetic Map10q11.21NCBI
HuRef1041,931,390 - 41,955,268 (+)NCBIHuRef
CHM1_11045,445,747 - 45,469,622 (+)NCBICHM1_1
T2T-CHM13v2.01045,792,055 - 45,818,001 (+)NCBIT2T-CHM13v2.0
Tmem72
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396116,668,500 - 116,693,943 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6116,656,024 - 116,693,874 (-)EnsemblGRCm39 Ensembl
GRCm386116,691,539 - 116,716,982 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6116,679,063 - 116,716,913 (-)EnsemblGRCm38mm10GRCm38
MGSCv376116,642,743 - 116,666,776 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366116,658,344 - 116,682,377 (-)NCBIMGSCv36mm8
Celera6118,534,797 - 118,558,809 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.84NCBI
Tmem72
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84151,620,696 - 151,645,989 (-)NCBIGRCr8
mRatBN7.24149,946,296 - 149,973,550 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4149,948,257 - 149,973,550 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4156,189,817 - 156,215,098 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04151,973,859 - 151,999,140 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04150,596,754 - 150,622,035 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04148,819,906 - 148,845,199 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4148,817,514 - 148,845,267 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04214,757,519 - 214,782,812 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44153,036,955 - 153,062,248 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14153,248,491 - 153,306,907 (-)NCBI
Celera4138,823,892 - 138,849,161 (-)NCBICelera
Cytogenetic Map4q42NCBI
Tmem72
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555462,244,620 - 2,262,298 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555462,244,639 - 2,264,987 (+)NCBIChiLan1.0ChiLan1.0
TMEM72
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2857,645,565 - 57,671,258 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11057,650,894 - 57,676,587 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01041,905,688 - 41,931,385 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11045,085,457 - 45,111,011 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1045,085,457 - 45,111,011 (+)Ensemblpanpan1.1panPan2
TMEM72
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1282,501,485 - 2,528,946 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl282,502,928 - 2,528,632 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha282,733,336 - 2,764,024 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0282,678,703 - 2,707,614 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl282,680,368 - 2,707,663 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1282,475,324 - 2,506,016 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0282,512,921 - 2,543,666 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0282,643,925 - 2,674,625 (-)NCBIUU_Cfam_GSD_1.0
Tmem72
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721382,078,653 - 82,106,466 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366174,677,484 - 4,706,280 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366174,677,546 - 4,705,317 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM72
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1940,534,937 - 40,561,808 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605645,842,627 - 45,868,361 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem72
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249823,683 - 21,626 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249827 - 21,431 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM72
878 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system nervous system renal system reproductive system
High
Medium 7 2 1
Low 1 1 4
Below cutoff 1 2 14

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000011396   ⟹   ENSSSCP00000011101
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1491,144,938 - 91,169,812 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000052872   ⟹   ENSSSCP00000059248
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1491,146,444 - 91,169,795 (-)Ensembl
RefSeq Acc Id: XM_013983489   ⟹   XP_013838943
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11491,144,938 - 91,169,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021072810   ⟹   XP_020928469
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11491,144,938 - 91,170,178 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021072811   ⟹   XP_020928470
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11491,144,938 - 91,169,797 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020928469   ⟸   XM_021072810
- Peptide Label: isoform X2
- UniProtKB: A0A8D0ZWP0 (UniProtKB/TrEMBL),   A0A8D0NX62 (UniProtKB/TrEMBL),   A0A8D1UEP8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013838943   ⟸   XM_013983489
- Peptide Label: isoform X1
- UniProtKB: A0A8D0I733 (UniProtKB/TrEMBL),   A0A8D0NQ54 (UniProtKB/TrEMBL),   A0A8D1S6P8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928470   ⟸   XM_021072811
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSSSCP00000011101   ⟸   ENSSSCT00000011396
RefSeq Acc Id: ENSSSCP00000059248   ⟸   ENSSSCT00000052872


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000025787 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00005005903 UniProtKB/TrEMBL
  ENSSSCG00015041740 UniProtKB/TrEMBL
  ENSSSCG00025069911 UniProtKB/TrEMBL
  ENSSSCG00030026075 UniProtKB/TrEMBL
  ENSSSCG00035040551 UniProtKB/TrEMBL
  ENSSSCG00040015024 UniProtKB/TrEMBL
  ENSSSCG00045037028 UniProtKB/TrEMBL
  ENSSSCG00050008756 UniProtKB/TrEMBL
  ENSSSCG00055030304 UniProtKB/TrEMBL
  ENSSSCG00060038739 UniProtKB/TrEMBL
  ENSSSCG00065018325 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011396.5 UniProtKB/TrEMBL
  ENSSSCT00000052872.3 UniProtKB/TrEMBL
  ENSSSCT00005008926.1 UniProtKB/TrEMBL
  ENSSSCT00015055709.1 UniProtKB/TrEMBL
  ENSSSCT00015055812.1 UniProtKB/TrEMBL
  ENSSSCT00025096021.1 UniProtKB/TrEMBL
  ENSSSCT00030036412.1 UniProtKB/TrEMBL
  ENSSSCT00035053851.1 UniProtKB/TrEMBL
  ENSSSCT00035053852.1 UniProtKB/TrEMBL
  ENSSSCT00040020198.1 UniProtKB/TrEMBL
  ENSSSCT00040020203.1 UniProtKB/TrEMBL
  ENSSSCT00045063821.1 UniProtKB/TrEMBL
  ENSSSCT00045063846.1 UniProtKB/TrEMBL
  ENSSSCT00050011859.1 UniProtKB/TrEMBL
  ENSSSCT00055060278.1 UniProtKB/TrEMBL
  ENSSSCT00055060281.1 UniProtKB/TrEMBL
  ENSSSCT00060052373.1 UniProtKB/TrEMBL
  ENSSSCT00065024365.1 UniProtKB/TrEMBL
  ENSSSCT00065024372.1 UniProtKB/TrEMBL
InterPro TMEM72 UniProtKB/TrEMBL
NCBI Gene TMEM72 ENTREZGENE
PANTHER PTHR28474 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 72 UniProtKB/TrEMBL
Pfam TMEM72 UniProtKB/TrEMBL
UniProt A0A287BSX2_PIG UniProtKB/TrEMBL
  A0A8D0I733 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NQ54 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NX62 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ZWP0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1S6P8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1UEP8 ENTREZGENE, UniProtKB/TrEMBL
  F1SD17_PIG UniProtKB/TrEMBL
VGNC ID VGNC:94206 ENTREZGENE