GSX2 (GS homeobox 2) - Rat Genome Database

Name: GSX2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: GSX2 (GS homeobox 2) Sus scrofa

Analyze

Symbol:

GSX2

Name:

GS homeobox 2

RGD ID:

14207381

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN brain development (ortholog); central nervous system development (ortholog); forebrain dorsal/ventral pattern formation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); Diencephalic-Mesencephalic Junction Dysplasia Syndrome 2 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GSX2 (GS homeobox 2)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Gsx2 (GS homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Gsx2 (GS homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gsx2 (GS homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GSX2 (GS homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GSX2 (GS homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gsx2 (GS homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GSX2 (GS homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gsx2 (GS homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	40,881,552 - 40,883,995 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	40,880,093 - 40,883,928 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	42,924,085 - 42,926,267 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis type 1 (ISO)

Diencephalic-Mesencephalic Junction Dysplasia Syndrome 2 (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brain development (IEA,ISO)

central nervous system development (IEA,ISO)

forebrain dorsal/ventral pattern formation (IEA,ISO)

forebrain morphogenesis (IEA,ISO)

GABAergic neuron differentiation (IEA,ISO)

generation of neurons (IEA)

hindbrain morphogenesis (IEA,ISO)

neuron fate commitment (IEA,ISO)

neuron fate specification (IEA,ISO)

Notch signaling pathway (IEA,ISO)

olfactory bulb development (IEA)

olfactory bulb interneuron differentiation (IEA,ISO)

pattern specification process (IEA,ISO)

positive regulation of Notch signaling pathway (IEA,ISO)

positive regulation of oligodendrocyte differentiation (IEA,ISO)

regulation of cell migration (IEA,ISO)

regulation of DNA-templated transcription (IEA)

regulation of respiratory gaseous exchange by nervous system process (IEA,ISO)

regulation of transcription by RNA polymerase II (IEA)

spinal cord association neuron differentiation (IEA,ISO)

subpallium development (IEA,ISO)

subpallium neuron fate commitment (IEA,ISO)

telencephalon regionalization (IEA,ISO)

Cellular Component

cytoplasm (IEA)

nucleus (IBA,IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,IEA)

sequence-specific double-stranded DNA binding (IBA,IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

GSX2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	40,881,552 - 40,883,995 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	40,880,093 - 40,883,928 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	42,924,085 - 42,926,267 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GSX2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	54,100,163 - 54,102,498 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	54,099,523 - 54,102,498 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	54,966,330 - 54,968,665 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	54,660,955 - 54,662,879 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	52,465,927 - 52,467,801 (+)	NCBI		Celera
Cytogenetic Map	4	q12	NCBI
HuRef	4	50,913,211 - 50,915,085 (+)	NCBI		HuRef
CHM1_1	4	55,001,958 - 55,003,832 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	57,587,414 - 57,589,749 (+)	NCBI		T2T-CHM13v2.0

Gsx2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	75,236,262 - 75,238,554 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	75,236,262 - 75,238,554 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	75,075,601 - 75,077,893 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	75,075,601 - 75,077,893 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	75,471,626 - 75,473,918 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	75,357,298 - 75,359,590 (+)	NCBI		MGSCv36	mm8
Celera	5	72,359,931 - 72,362,223 (+)	NCBI		Celera
Cytogenetic Map	5	C3.3	NCBI
cM Map	5	39.55	NCBI

Gsx2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	33,477,968 - 33,480,320 (-)	NCBI		GRCr8
mRatBN7.2	14	33,123,799 - 33,126,151 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	33,124,381 - 33,126,105 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	33,474,374 - 33,476,721 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	34,782,183 - 34,784,530 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	33,267,435 - 33,269,782 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	35,650,985 - 35,652,709 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	35,650,985 - 35,652,709 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	35,479,361 - 35,481,085 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	35,489,441 - 35,491,165 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	35,489,434 - 35,491,334 (-)	NCBI
Celera	14	32,394,600 - 32,396,324 (-)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

Gsx2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955447	16,714,870 - 16,715,757 (-)	NCBI	ChiLan1.0	ChiLan1.0

GSX2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	75,691,400 - 75,693,735 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	75,896,315 - 75,898,641 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	69,837,643 - 69,840,101 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	76,397,771 - 76,399,715 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	76,397,180 - 76,399,715 (-)	Ensembl	panpan1.1		panPan2

GSX2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	46,640,172 - 46,642,405 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	46,640,172 - 46,641,546 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	46,597,718 - 46,599,873 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	47,250,450 - 47,252,604 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	47,250,428 - 47,252,675 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	46,923,091 - 46,925,239 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	46,455,303 - 46,457,455 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	47,328,642 - 47,330,797 (+)	NCBI		UU_Cfam_GSD_1.0

Gsx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	29,591,982 - 29,594,299 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	16,704,193 - 16,705,729 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	16,703,936 - 16,706,224 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GSX2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	14,436,848 - 14,446,197 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	14,439,371 - 14,440,944 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666066	15,277,429 - 15,279,859 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gsx2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624761	15,387,674 - 15,389,229 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624761	15,387,217 - 15,389,404 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in GSX2
66 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	nervous system
High
Medium
Low	1
Below cutoff	3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003128986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021101263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP015892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01015837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000009677 ⟹ ENSSSCP00000009428

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	8	40,881,552 - 40,883,995 (+)	Ensembl

RefSeq Acc Id:

XM_003128986 ⟹ XP_003129034

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	8	40,880,093 - 40,883,928 (+)	NCBI

Sequence:

show sequence

TACAACTCAATTACACTTCTCTAGCAGGCAAGAGAGACGATGGTCACAGAGATGGAAAGGGGAA
AGGAGAGGACAGAGTGAGAGCCGTGCCTCTGCGAAGCTGATGCTCCCCTAGGATTTGGGCCCTT
GGTTCTCCCAGGTGGCGAGAGACCGTCCCCAAGTTTCTTAGCACCACTGTGATCTCAGGCCTGA
AGGCAGCTATTTGGGGGAAAGGACTGAACTTGTATGTGCTGCTTTGCCCTCCCTACTCCAGCCA
GATGTCACTAGGGCAGCCTTGCCATCCCTGAAAGATCAACAACGCCTATCTGGGCAGTCACCTT
CTCCCATATAGCCACTGATACACCCATCCTCCACTGGACCCTATACCACTCAGAGGCTTCCTCT
ATCAAGCCATTGCTCCCATCCTGAGGTAGGATTCATTGACTGGCTCAATTCCCTTCAGCCGTTT
TGGGCTTTAAAAGGGGTGCATAGGGGAGAGTGCTCCCTGGTTAGCCTGATAGCTACTTGAGATC
TGTAAACTGCAAAAGGGCAGAAGTTGGGAAAACCCAAAGTGAAGGCTTCCCTCAGCCCATGCCC
AGGCTCCAGAAGGGCTGGGGTTTGGTCCTCTCTCCAAAGTCCTTGTGATGGAGTTTGTTATGGT
TGGCCTGGAAATGCAGCTGTGGACCCACTTGGAGAAAGAAAAGAGTGGCCTTTCAGTGTCTCTC
TTGCCCAGACTCCGACACCTCCGCGTCCCCAAGGGCTTGACCGCCTGCGTCCGCGCCGCGCCCG
GGGCAGAGGCTCAGGACAGGAGAGGGGAGGGGGCGCCACGGCCGACCAGGCCCTCCAGCCACGA
ACCCCTCCCGACATGTCGCGCTCCTTCTATGTCGACTCGCTCATCATCAAGGACTCCTCACGGC
CCGCGCCCTCGCTTCCTGAGCCGCACCCCGGGCCAGATTTTTTCATCCCGCTGGGCATGCCATC
CCCGTTGGTGATGTCCGTGTCTGGGCCCGGCTGCCAGTCCCGCAAGAGCGGCGCGTTCTGCGTT
TGCCCGCTCTGCGTCACTTCGCACCTGCACTCCTCTCGGGGACCCGCGGGCTCCGGAGGCGGGG
GCGCAGGGACCGGGAGTGCAGGGACCGGGGGTGGCGGGGCGGCGGGAGCCGCTGGGGCCCTGCC
CCTGCTCAAGAGTCAGTTTTCTTCGAGTCCTGGGGACGCACAGTTTTGCCCGCGCGTGAGCCAC
GCGCACCATCACCACCATCCGCCGCAGCACCACCATCACCACCACCAGCCCCAGCAGCCCGGCT
CGGCTGCCGCCGCGGCGGCAGCGGCGGCGGCGGCGGCGGCAGCGGCGGCCTTGGGGCACCCGCA
GCACCACGCACCTGTCTGTACCGCCACTACCTACAACGTGGCGGACCCGCGGAGATTCCACTGC
CTCACTATGGGGGGCTCGGACGCCAACCAGGTACCCAATGGCAAGAGGATGAGGACCGCATTCA
CTAGCACGCAGCTCCTGGAGCTCGAGCGGGAATTCTCTTCCAACATGTACCTGTCTAGACTCCG
GAGGATCGAAATCGCCACGTACCTGAACCTGTCGGAGAAGCAGGTGAAAATCTGGTTTCAGAAC
CGCCGGGTGAAGCATAAGAAGGAAGGGAAGGGCACGCAGAGGAACAGTCACGCGGGCTGCAAGT
GCGTCGGCAGCCAGGCGCACTACGCGCGCTCGGAGGATGAGGACTCCTTGTCGCCGGCCTCGGC
CAACGATGACAAGGAGATTTCCCCGTTATAAGGGAGGGCGCTTTCGCCACACGCCCGCAGCAGC
CCTCACAATGCCTACAAGGCAGGCACCCAGGAGCCCAAATCCTCGCCCTTCCGCTGGTCTCACC
TGGGGAAGGTGGAGCCAAGCGTTCCCCGGGGGTGTAAGTGCCGGGACTGACCCTTCACGTTTTC
TCCTTCGCCTGTTTGTTTGGGGCTCCACTCGCAGTTATAGGTCTTTTTTAAAAAAAATGTAAAT
AATCTAGATTCAACTCAGTCTTATGTAACAGAAAAAACCCGGACTGGTTTAAGTTTAAAACTAT
ATGTGGGTTTTTGAAAACGCATATTATTTTCCTTTCCCTGTCTTTCAGAACGTGGTGAGAACAC
GAGGTTTCGTGATAATTTTTTGTTTTTGTTGTTTTCATGAAAGTATTGAACTGCAAATAACGTA
GAAAATTAAACCCTGTAGGTCTTGCTTCCTGAAAACTTGCTTGGGGAGAGTTTAAAATCCAAGT
TGCTGGAAGTCTCCTTGTGAATAGTTTTATATAAAATTTATATTTATATTTATTTAAATAAATG
GCACAAAATCAA

hide sequence

RefSeq Acc Id:

XM_021101263 ⟹ XP_020956922

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	8	40,880,093 - 40,883,928 (+)	NCBI

Sequence:

show sequence

TACAACTCAATTACACTTCTCTAGCAGGCAAGAGAGACGATGGTCACAGAGATGGAAAGGGGAA
AGGAGAGGACAGAGTGAGAGCCGTGCCTCTGCGAAGCTGATGCTCCCCTAGGATTTGGGCCCTT
GGTTCTCCCAGGTGGCGAGAGACCGTCCCCAAGTTTCTTAGCACCACTGTGATCTCAGGCCTGA
AGGCAGCTATTTGGGGGAAAGGACTGAACTTGTATGTGCTGCTTTGCCCTCCCTACTCCAGCCA
GATGTCACTAGGGCAGCCTTGCCATCCCTGAAAGATCAACAACGCCTATCTGGGCAGTCACCTT
CTCCCATATAGCCACTGATACACCCATCCTCCACTGGACCCTATACCACTCAGAGGCTTCCTCT
ATCAAGCCATTGCTCCCATCCTGAGCCCAGACTCCGACACCTCCGCGTCCCCAAGGGCTTGACC
GCCTGCGTCCGCGCCGCGCCCGGGGCAGAGGCTCAGGACAGGAGAGGGGAGGGGGCGCCACGGC
CGACCAGGCCCTCCAGCCACGAACCCCTCCCGACATGTCGCGCTCCTTCTATGTCGACTCGCTC
ATCATCAAGGACTCCTCACGGCCCGCGCCCTCGCTTCCTGAGCCGCACCCCGGGCCAGATTTTT
TCATCCCGCTGGGCATGCCATCCCCGTTGGTGATGTCCGTGTCTGGGCCCGGCTGCCAGTCCCG
CAAGAGCGGCGCGTTCTGCGTTTGCCCGCTCTGCGTCACTTCGCACCTGCACTCCTCTCGGGGA
CCCGCGGGCTCCGGAGGCGGGGGCGCAGGGACCGGGAGTGCAGGGACCGGGGGTGGCGGGGCGG
CGGGAGCCGCTGGGGCCCTGCCCCTGCTCAAGAGTCAGTTTTCTTCGAGTCCTGGGGACGCACA
GTTTTGCCCGCGCGTGAGCCACGCGCACCATCACCACCATCCGCCGCAGCACCACCATCACCAC
CACCAGCCCCAGCAGCCCGGCTCGGCTGCCGCCGCGGCGGCAGCGGCGGCGGCGGCGGCGGCAG
CGGCGGCCTTGGGGCACCCGCAGCACCACGCACCTGTCTGTACCGCCACTACCTACAACGTGGC
GGACCCGCGGAGATTCCACTGCCTCACTATGGGGGGCTCGGACGCCAACCAGGTACCCAATGGC
AAGAGGATGAGGACCGCATTCACTAGCACGCAGCTCCTGGAGCTCGAGCGGGAATTCTCTTCCA
ACATGTACCTGTCTAGACTCCGGAGGATCGAAATCGCCACGTACCTGAACCTGTCGGAGAAGCA
GGTGAAAATCTGGTTTCAGAACCGCCGGGTGAAGCATAAGAAGGAAGGGAAGGGCACGCAGAGG
AACAGTCACGCGGGCTGCAAGTGCGTCGGCAGCCAGGCGCACTACGCGCGCTCGGAGGATGAGG
ACTCCTTGTCGCCGGCCTCGGCCAACGATGACAAGGAGATTTCCCCGTTATAAGGGAGGGCGCT
TTCGCCACACGCCCGCAGCAGCCCTCACAATGCCTACAAGGCAGGCACCCAGGAGCCCAAATCC
TCGCCCTTCCGCTGGTCTCACCTGGGGAAGGTGGAGCCAAGCGTTCCCCGGGGGTGTAAGTGCC
GGGACTGACCCTTCACGTTTTCTCCTTCGCCTGTTTGTTTGGGGCTCCACTCGCAGTTATAGGT
CTTTTTTAAAAAAAATGTAAATAATCTAGATTCAACTCAGTCTTATGTAACAGAAAAAACCCGG
ACTGGTTTAAGTTTAAAACTATATGTGGGTTTTTGAAAACGCATATTATTTTCCTTTCCCTGTC
TTTCAGAACGTGGTGAGAACACGAGGTTTCGTGATAATTTTTTGTTTTTGTTGTTTTCATGAAA
GTATTGAACTGCAAATAACGTAGAAAATTAAACCCTGTAGGTCTTGCTTCCTGAAAACTTGCTT
GGGGAGAGTTTAAAATCCAAGTTGCTGGAAGTCTCCTTGTGAATAGTTTTATATAAAATTTATA
TTTATATTTATTTAAATAAATGGCACAAAATCAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003129034	(Get FASTA)	NCBI Sequence Viewer
	XP_020956922	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000009428
	ENSSSCP00000009428.2
	ENSSSCP00025001721.1
	ENSSSCP00030021174.1
	ENSSSCP00035006324.1
	ENSSSCP00040022290.1
	ENSSSCP00045041331.1
	ENSSSCP00050012929.1
	ENSSSCP00055006939.1
	ENSSSCP00060046073.1
	ENSSSCP00065002178.1
	ENSSSCP00070025853.1

RefSeq Acc Id:

XP_003129034 ⟸ XM_003128986

- UniProtKB:

F1SE61 (UniProtKB/TrEMBL), A0A4X1UAB5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSRSFYVDSLIIKDSSRPAPSLPEPHPGPDFFIPLGMPSPLVMSVSGPGCQSRKSGAFCVCPLC
VTSHLHSSRGPAGSGGGGAGTGSAGTGGGGAAGAAGALPLLKSQFSSSPGDAQFCPRVSHAHHH
HHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADPRRFHCLTMG
GSDANQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVK
HKKEGKGTQRNSHAGCKCVGSQAHYARSEDEDSLSPASANDDKEISPL

hide sequence

RefSeq Acc Id:

XP_020956922 ⟸ XM_021101263

- UniProtKB:

A0A4X1UAB5 (UniProtKB/TrEMBL), F1SE61 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSRSFYVDSLIIKDSSRPAPSLPEPHPGPDFFIPLGMPSPLVMSVSGPGCQSRKSGAFCVCPLC
VTSHLHSSRGPAGSGGGGAGTGSAGTGGGGAAGAAGALPLLKSQFSSSPGDAQFCPRVSHAHHH
HHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADPRRFHCLTMG
GSDANQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVK
HKKEGKGTQRNSHAGCKCVGSQAHYARSEDEDSLSPASANDDKEISPL

hide sequence

RefSeq Acc Id:

ENSSSCP00000009428 ⟸ ENSSSCT00000009677

Protein Domains

Homeobox

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000008840	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025003365	UniProtKB/TrEMBL
	ENSSSCG00030033932	UniProtKB/TrEMBL
	ENSSSCG00035014366	UniProtKB/TrEMBL
	ENSSSCG00040039977	UniProtKB/TrEMBL
	ENSSSCG00045034479	UniProtKB/TrEMBL
	ENSSSCG00050022949	UniProtKB/TrEMBL
	ENSSSCG00055004450	UniProtKB/TrEMBL
	ENSSSCG00060076518	UniProtKB/TrEMBL
	ENSSSCG00065003698	UniProtKB/TrEMBL
	ENSSSCG00070015787	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000009677	ENTREZGENE
	ENSSSCT00000009677.4	UniProtKB/TrEMBL
	ENSSSCT00025004437.1	UniProtKB/TrEMBL
	ENSSSCT00030046981.1	UniProtKB/TrEMBL
	ENSSSCT00035018185.1	UniProtKB/TrEMBL
	ENSSSCT00040053504.1	UniProtKB/TrEMBL
	ENSSSCT00045059036.1	UniProtKB/TrEMBL
	ENSSSCT00050030977.1	UniProtKB/TrEMBL
	ENSSSCT00055008772.1	UniProtKB/TrEMBL
	ENSSSCT00060104997.1	UniProtKB/TrEMBL
	ENSSSCT00065005037.1	UniProtKB/TrEMBL
	ENSSSCT00070030996.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	GSH2	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	Homeobox_metazoa	UniProtKB/TrEMBL
KEGG Report	ssc:100524448	UniProtKB/TrEMBL
NCBI Gene	GSX2	ENTREZGENE
PANTHER	GS HOMEOBOX 2	UniProtKB/TrEMBL
	PTHR47421	UniProtKB/TrEMBL
Pfam	Homeodomain	UniProtKB/TrEMBL
PRINTS	HOMEOBOX	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A4X1UAB5	ENTREZGENE, UniProtKB/TrEMBL
	F1SE61	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:88729	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM