PBXIP1 (PBX homeobox interacting protein 1) - Rat Genome Database

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Gene: PBXIP1 (PBX homeobox interacting protein 1) Sus scrofa
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Symbol: PBXIP1
Name: PBX homeobox interacting protein 1
RGD ID: 14205814
Description: ENCODES a protein that exhibits DNA-binding transcription factor binding (inferred); transcription coactivator activity (inferred); transcription corepressor activity (inferred); INVOLVED IN articular cartilage development (inferred); cell adhesion (inferred); cell migration (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); COVID-19 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN chromatin (inferred); cytoplasm (inferred); cytosol (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pre-B-cell leukemia transcription factor-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,832,270 - 94,847,648 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1494,837,365 - 94,847,652 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,593,810 - 103,620,428 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
PBXIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl494,832,270 - 94,847,648 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1494,837,365 - 94,847,652 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24103,593,810 - 103,620,428 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PBXIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381154,944,080 - 154,956,099 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1154,944,076 - 154,956,123 (-)EnsemblGRCh38hg38GRCh38
GRCh371154,916,556 - 154,928,575 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361153,183,180 - 153,195,191 (-)NCBINCBI36Build 36hg18NCBI36
Build 341151,729,633 - 151,741,640NCBI
Celera1127,987,581 - 127,999,592 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1126,278,515 - 126,290,312 (-)NCBIHuRef
CHM1_11156,312,931 - 156,324,942 (-)NCBICHM1_1
T2T-CHM13v2.01154,083,441 - 154,095,460 (-)NCBIT2T-CHM13v2.0
Pygo2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,337,521 - 89,342,438 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,337,521 - 89,342,435 (+)EnsemblGRCm39 Ensembl
GRCm38389,430,114 - 89,435,131 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,430,214 - 89,435,128 (+)EnsemblGRCm38mm10GRCm38
MGSCv37389,234,759 - 89,239,050 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36389,516,141 - 89,521,061 (+)NCBIMGSCv36mm8
Celera389,465,970 - 89,470,261 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.12NCBI
Pygo2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,147,407 - 177,152,476 (+)NCBIGRCr8
mRatBN7.22174,849,670 - 174,854,758 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,849,936 - 174,854,758 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,995,576 - 182,000,249 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,017,959 - 180,022,632 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02174,618,553 - 174,623,231 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02188,757,167 - 188,762,285 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,757,489 - 188,762,282 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02208,171,437 - 208,176,567 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42181,628,693 - 181,633,360 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12181,578,648 - 181,582,650 (+)NCBI
Celera2168,790,790 - 168,795,470 (+)NCBICelera
Cytogenetic Map2q34NCBI
Pbxip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555451,452,395 - 1,462,639 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555451,451,541 - 1,467,856 (-)NCBIChiLan1.0ChiLan1.0
PYGO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2194,878,730 - 94,883,453 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,611,030 - 94,615,584 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01130,305,547 - 130,310,270 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,912,411 - 133,920,308 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,912,411 - 133,920,308 (-)Ensemblpanpan1.1panPan2
PYGO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,509,760 - 42,513,744 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl742,509,968 - 42,512,091 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,000,993 - 42,004,825 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,380,064 - 42,383,893 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,379,911 - 42,383,891 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,159,756 - 42,163,584 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,213,362 - 42,217,193 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,496,947 - 42,500,777 (+)NCBIUU_Cfam_GSD_1.0
Pygo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505825,476,599 - 25,480,652 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365804,507,925 - 4,511,107 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365804,506,982 - 4,511,044 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PBXIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1208,872,492 - 8,884,029 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl208,872,409 - 8,884,450 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660388,207,573 - 8,219,598 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pbxip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248852,528,222 - 2,535,795 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248852,526,072 - 2,535,618 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PBXIP1
171 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 5 2 20 2 3 3
Low 2 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000007162   ⟹   ENSSSCP00000006969
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl494,832,270 - 94,847,299 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000044869   ⟹   ENSSSCP00000056809
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl494,837,468 - 94,847,648 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000088599   ⟹   ENSSSCP00000071897
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl494,832,270 - 94,847,648 (+)Ensembl
RefSeq Acc Id: XM_021089739   ⟹   XP_020945398
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1494,837,365 - 94,847,652 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021089740   ⟹   XP_020945399
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1494,837,445 - 94,847,652 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021089741   ⟹   XP_020945400
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1494,837,480 - 94,847,652 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020945398   ⟸   XM_021089739
- UniProtKB: A0A8D1HFA8 (UniProtKB/TrEMBL),   A0A0B8RTE0 (UniProtKB/TrEMBL),   F1RGP4 (UniProtKB/TrEMBL),   A0A8D1ZNX0 (UniProtKB/TrEMBL),   A0A8D0I6Z7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020945399   ⟸   XM_021089740
- UniProtKB: A0A8D1HFA8 (UniProtKB/TrEMBL),   A0A0B8RTE0 (UniProtKB/TrEMBL),   F1RGP4 (UniProtKB/TrEMBL),   A0A8D1ZNX0 (UniProtKB/TrEMBL),   A0A8D0I6Z7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020945400   ⟸   XM_021089741
- UniProtKB: A0A8D1HFA8 (UniProtKB/TrEMBL),   A0A0B8RTE0 (UniProtKB/TrEMBL),   F1RGP4 (UniProtKB/TrEMBL),   A0A8D1ZNX0 (UniProtKB/TrEMBL),   A0A8D0I6Z7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000071897   ⟸   ENSSSCT00000088599
RefSeq Acc Id: ENSSSCP00000056809   ⟸   ENSSSCT00000044869
RefSeq Acc Id: ENSSSCP00000006969   ⟸   ENSSSCT00000007162


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006540 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005005811 UniProtKB/TrEMBL
  ENSSSCG00030067306 UniProtKB/TrEMBL
  ENSSSCG00035080627 UniProtKB/TrEMBL
  ENSSSCG00045015493 UniProtKB/TrEMBL
  ENSSSCG00065062417 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007162 ENTREZGENE
  ENSSSCT00000007162.5 UniProtKB/TrEMBL
  ENSSSCT00000044869 ENTREZGENE
  ENSSSCT00000044869.2 UniProtKB/TrEMBL
  ENSSSCT00000088599.1 UniProtKB/TrEMBL
  ENSSSCT00005008855.1 UniProtKB/TrEMBL
  ENSSSCT00030094091.1 UniProtKB/TrEMBL
  ENSSSCT00030094144.1 UniProtKB/TrEMBL
  ENSSSCT00035110574.1 UniProtKB/TrEMBL
  ENSSSCT00045026653.1 UniProtKB/TrEMBL
  ENSSSCT00065085646.1 UniProtKB/TrEMBL
NCBI Gene PBXIP1 ENTREZGENE
PANTHER CELL CYCLE PROGRESSION PROTEIN 1 UniProtKB/TrEMBL
  PTHR28638:SF1 UniProtKB/TrEMBL
UniProt A0A0B8RTE0 ENTREZGENE
  A0A287BL58_PIG UniProtKB/TrEMBL
  A0A8D0I6Z7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Y3D7_PIG UniProtKB/TrEMBL
  A0A8D1HFA8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ZNX0 ENTREZGENE, UniProtKB/TrEMBL
  F1RGP4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:109435 ENTREZGENE