UBALD2 (UBA like domain containing 2) - Rat Genome Database

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Gene: UBALD2 (UBA like domain containing 2) Sus scrofa
Analyze
Symbol: UBALD2
Name: UBA like domain containing 2
RGD ID: 14204152
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UBA-like domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,203,195 - 5,208,679 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,203,188 - 5,208,673 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,106,927 - 5,112,387 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
UBALD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,203,195 - 5,208,679 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,203,188 - 5,208,673 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,106,927 - 5,112,387 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBALD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381776,265,348 - 76,271,298 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1776,265,348 - 76,271,298 (+)EnsemblGRCh38hg38GRCh38
GRCh371774,261,429 - 74,267,379 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361771,773,043 - 71,778,970 (+)NCBINCBI36Build 36hg18NCBI36
Celera1770,855,214 - 70,861,308 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1769,689,808 - 69,695,885 (+)NCBIHuRef
CHM1_11774,326,185 - 74,332,279 (+)NCBICHM1_1
T2T-CHM13v2.01777,161,904 - 77,167,854 (+)NCBIT2T-CHM13v2.0
Ubald2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911116,324,920 - 116,329,903 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11116,324,920 - 116,329,903 (+)EnsemblGRCm39 Ensembl
GRCm3811116,434,094 - 116,439,077 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,434,094 - 116,439,077 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711116,295,408 - 116,300,391 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611116,250,303 - 116,254,633 (+)NCBIMGSCv36mm8
Celera11128,202,339 - 128,207,311 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1181.29NCBI
Ubald2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810102,161,370 - 102,165,952 (+)NCBIGRCr8
mRatBN7.210101,662,507 - 101,667,089 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,658,127 - 101,667,061 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10106,718,905 - 106,723,499 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010106,181,985 - 106,186,579 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010101,583,402 - 101,587,984 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010105,392,999 - 105,397,642 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10105,393,072 - 105,396,863 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010105,053,919 - 105,059,080 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410106,543,188 - 106,547,768 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110106,557,693 - 106,562,272 (+)NCBI
Celera10100,235,164 - 100,240,182 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Ubald2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555066,015,245 - 6,024,283 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555066,018,472 - 6,027,133 (-)NCBIChiLan1.0ChiLan1.0
UBALD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21992,307,977 - 92,314,136 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11797,133,475 - 97,139,345 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01770,213,144 - 70,219,285 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11775,765,980 - 75,771,718 (+)NCBIpanpan1.1PanPan1.1panPan2
UBALD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,411,036 - 4,415,507 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,411,882 - 4,412,199 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,091,650 - 5,096,974 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,081,308 - 5,086,643 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,081,160 - 5,087,026 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,121,424 - 5,126,757 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,230,882 - 5,236,199 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,291,042 - 5,296,375 (-)NCBIUU_Cfam_GSD_1.0
Ubald2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,028,954 - 5,047,325 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365941,381,758 - 1,382,133 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365941,378,576 - 1,383,010 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBALD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11645,407,295 - 45,413,700 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1645,408,068 - 45,413,398 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607716,155,027 - 16,161,428 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubald2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248016,144,982 - 6,150,639 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248016,145,097 - 6,150,066 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UBALD2
169 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 7 2 2
Low 3 4 3 3 23 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000026568   ⟹   ENSSSCP00000022416
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl125,203,195 - 5,208,679 (-)Ensembl
RefSeq Acc Id: XM_003357957   ⟹   XP_003358005
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,203,188 - 5,208,673 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005656922   ⟹   XP_005656979
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,203,188 - 5,208,537 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003358005   ⟸   XM_003357957
- Peptide Label: isoform X1
- UniProtKB: I3LEC8 (UniProtKB/TrEMBL),   A0A4X1UY87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005656979   ⟸   XM_005656922
- Peptide Label: isoform X2
- UniProtKB: A0A8D0UTP0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000022416   ⟸   ENSSSCT00000026568


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023423 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025048943 UniProtKB/TrEMBL
  ENSSSCG00030004158 UniProtKB/TrEMBL
  ENSSSCG00035055207 UniProtKB/TrEMBL
  ENSSSCG00040074759 UniProtKB/TrEMBL
  ENSSSCG00045036547 UniProtKB/TrEMBL
  ENSSSCG00050014640 UniProtKB/TrEMBL
  ENSSSCG00055009561 UniProtKB/TrEMBL
  ENSSSCG00060064087 UniProtKB/TrEMBL
  ENSSSCG00065063868 UniProtKB/TrEMBL
  ENSSSCG00070020080 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000026568 ENTREZGENE
  ENSSSCT00000026568.4 UniProtKB/TrEMBL
  ENSSSCT00025066645.1 UniProtKB/TrEMBL
  ENSSSCT00030005464.1 UniProtKB/TrEMBL
  ENSSSCT00035073635.1 UniProtKB/TrEMBL
  ENSSSCT00040103426.1 UniProtKB/TrEMBL
  ENSSSCT00045062928.1 UniProtKB/TrEMBL
  ENSSSCT00050019768.1 UniProtKB/TrEMBL
  ENSSSCT00055018656.1 UniProtKB/TrEMBL
  ENSSSCT00060087460.1 UniProtKB/TrEMBL
  ENSSSCT00065087662.1 UniProtKB/TrEMBL
  ENSSSCT00070039803.1 UniProtKB/TrEMBL
Gene3D-CATH DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
InterPro UBA-like_sf UniProtKB/TrEMBL
  UBALD1/2 UniProtKB/TrEMBL
KEGG Report ssc:100519560 UniProtKB/TrEMBL
NCBI Gene UBALD2 ENTREZGENE
PANTHER PTHR31993 UniProtKB/TrEMBL
  UBA-LIKE DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam UBA_4 UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/TrEMBL
UniProt A0A4X1UY87 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UTP0 ENTREZGENE, UniProtKB/TrEMBL
  I3LEC8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94633 ENTREZGENE