Gene: UBALD2 (UBA like domain containing 2) Sus scrofa |
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Analyze |
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Symbol: |
UBALD2 |
Name: |
UBA like domain containing 2 |
RGD ID: |
14204152 |
Description: |
ASSOCIATED WITH genetic disease (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
UBA-like domain-containing protein 2 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
Sscrofa11.1 - Pig Sscrofa11.1 Assembly |
Position: |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 12 | 5,203,195 - 5,208,679 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 12 | 5,203,188 - 5,208,673 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 12 | 5,106,927 - 5,112,387 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Additional References at PubMed
Genomics
Comparative Map Data
UBALD2 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 12 | 5,203,195 - 5,208,679 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 12 | 5,203,188 - 5,208,673 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 12 | 5,106,927 - 5,112,387 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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UBALD2 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 17 | 76,265,348 - 76,271,298 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 17 | 76,265,348 - 76,271,298 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 17 | 74,261,429 - 74,267,379 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 17 | 71,773,043 - 71,778,970 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 17 | 70,855,214 - 70,861,308 (+) | NCBI | | Celera | | | Cytogenetic Map | 17 | q25.1 | NCBI | | | | | HuRef | 17 | 69,689,808 - 69,695,885 (+) | NCBI | | HuRef | | | CHM1_1 | 17 | 74,326,185 - 74,332,279 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 17 | 77,161,904 - 77,167,854 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Ubald2 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 11 | 116,324,920 - 116,329,903 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 11 | 116,324,920 - 116,329,903 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 11 | 116,434,094 - 116,439,077 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 11 | 116,434,094 - 116,439,077 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 11 | 116,295,408 - 116,300,391 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 11 | 116,250,303 - 116,254,633 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 11 | 128,202,339 - 128,207,311 (+) | NCBI | | Celera | | | Cytogenetic Map | 11 | E2 | NCBI | | | | | cM Map | 11 | 81.29 | NCBI | | | | |
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Ubald2 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 10 | 102,161,370 - 102,165,952 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 10 | 101,662,507 - 101,667,089 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 10 | 101,658,127 - 101,667,061 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 10 | 106,718,905 - 106,723,499 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 10 | 106,181,985 - 106,186,579 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 10 | 101,583,402 - 101,587,984 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 10 | 105,392,999 - 105,397,642 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 10 | 105,393,072 - 105,396,863 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 10 | 105,053,919 - 105,059,080 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 10 | 106,543,188 - 106,547,768 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 10 | 106,557,693 - 106,562,272 (+) | NCBI | | | | | Celera | 10 | 100,235,164 - 100,240,182 (+) | NCBI | | Celera | | | Cytogenetic Map | 10 | q32.1 | NCBI | | | | |
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Ubald2 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955506 | 6,015,245 - 6,024,283 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955506 | 6,018,472 - 6,027,133 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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UBALD2 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 19 | 92,307,977 - 92,314,136 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 17 | 97,133,475 - 97,139,345 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 17 | 70,213,144 - 70,219,285 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 17 | 75,765,980 - 75,771,718 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | |
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UBALD2 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 9 | 4,411,036 - 4,415,507 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 9 | 4,411,882 - 4,412,199 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 9 | 5,091,650 - 5,096,974 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 9 | 5,081,308 - 5,086,643 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 9 | 5,081,160 - 5,087,026 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 9 | 5,121,424 - 5,126,757 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 9 | 5,230,882 - 5,236,199 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 9 | 5,291,042 - 5,296,375 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Ubald2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405602 | 5,028,954 - 5,047,325 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936594 | 1,381,758 - 1,382,133 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936594 | 1,378,576 - 1,383,010 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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UBALD2 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 16 | 45,407,295 - 45,413,700 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 16 | 45,408,068 - 45,413,398 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666077 | 16,155,027 - 16,161,428 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Ubald2 (Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
hemolymphoid system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
High |
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Medium |
7
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2
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2
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Low |
3
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4
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3
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3
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23
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2
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3
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3
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Below cutoff |
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Sequence
RefSeq Acc Id: |
ENSSSCT00000026568 ⟹ ENSSSCP00000022416 |
Type: |
CODING |
Position: |
Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 Ensembl | 12 | 5,203,195 - 5,208,679 (-) | Ensembl |
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RefSeq Acc Id: |
XM_003357957 ⟹ XP_003358005 |
Type: |
CODING |
Position: |
Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 | 12 | 5,203,188 - 5,208,673 (-) | NCBI |
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Sequence: |
GCCGCAGGATTCGAATCGAACGTCTGTACCGGAGCCGGGCTCCGGCCGAGCGGCGCCGGCCAAT CAGCGGCGGCGGCTCGCGGCCCCCGAACGTTGGGACACCCGGCCCCGCCCCGCGCTGTTGTTTG TGGTGTCGGCCGGCGGCGCGAGCCGGACCACAACACTCGCCCGGCGGGCGGCGGGGCGGCCGAG GGTCCGGGGGCCGCCGGAGGCGGCGAGCGCGAGCCGAGGGCAGCCGGCCTCCCGCGGCCGCCAA GCCCGGGAGAGCGCGCCGGCCGGAGCCATGTCGGTGAACATGGATGAGCTGCGGCACCAGGTCA TGATCAACCAGTTCGTGCTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGCTGCTGCAGGC GGCGCACTGGCAGTTCGAGACCGCCCTGAGCACGTTTTTCCAAGAAACCAACATTCCCAACAGC CACCACCACCACCAGATGATGGGCACCCCCAGCAACACACCGGCCACGCCGCCCAACTTCCCCG ACGCCCTGGCTATGTTCTCCAAGCTCCGTGCCTCCGAGGGCCTGCAGAACGGCAGCAGCCCCAT GACCGCCGTGGCCTGCTCCCCTCCTGCCAACTTCAGCCCCTTCTGGGCCTCGTCCCCGCCCAGC CACCAGGCCGCCTGGATCCCGCCCTCCTCCCCCACGGCCCACAGCTTCCACCACCTCCACCACC CACAGCCCACGTGGCCGCCTGGAGCCCAGCAGGCGGGCCCCCCGCAGAAAGCCATGGCTGCGGT GGACGGCCAGAGATGAGACTCGATGCCGCCGGGCGCGGGGCTGCAGCCGGGGCCGTCGAGGCCG TCGGGGGAGCTGGGGCGGGCGGGGGTTTCCTGAAGATCGCACTGGAAGATTTTATAAGAGAATT TTTGTGGGTGGGGGGCAGTAAACGTCCTGAGCCACTTGGGTCCTTCAGGAGTTTCTCTTCAGGC AAGTTTTTTTTTTTTCTCTTTTTAATATATAACGATAATATATATGAATATATAAAAATAACTA ATGTATGTGAGTATGGGGCTGGCTGACAGGGTGTTGTCCGCGGGGAAGGGTCGGGATCCTCCCC CCAGCCCCAGGGCAGGTGCTGGAAAGCCAGGGGGCCCGAACTTGGGGTCTGCTAGCTGCCTCCT CTCAGAGGTCACACCTTCTAGAAGCAGAAGGATGATCACCCCTCCACTCCAATGAGGGGTTGCA GGAGGGGCTCCCAGAGGTGCCGGTGGCCGCAGGTGGGGGGCTCTTGGCCATTGAGAGGCTCTCC CCACCCCGCTGGTGGCTGGCTCCTCTGTCACTCTCCAGTTCTTGTCACCTCTCCTGGTGTCGCC CGTCTCCAGCTAGGGGTGCAGGGCTTGTGTGGGACTCAAGAGCCGGCTCGGCCAAAGGCCCAGG CTCTGCTGGCGGGGGCCTGACCCCGCAGCCACCCTGCCTCTCTTCCTCTGTGTCTGCGGCGATG GTGGAGAGCTTTCCTTTGGGTTTTGGTCCCCAGTCAATCATCTCACCAGGGTGAAATTTTAATT TAAAACTTAAAAGAGACTTTTCTAACTTC
hide sequence
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RefSeq Acc Id: |
XM_005656922 ⟹ XP_005656979 |
Type: |
CODING |
Position: |
Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 | 12 | 5,203,188 - 5,208,537 (-) | NCBI |
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Sequence: |
GCCGGCGGCGCGAGCCGGACCACAACACTCGCCCGGCGGGCGGCGGGGCGGCCGAGGGTCCGGG GGCCGCCGGAGGCGGCGAGCGCGAGCCGAGGGCAGCCGGCCTCCCGCGGCCGCCAAGCCCGGGA GAGCGCGCCGGCCGGAGCCATGTCGGTGAACATGGATGAGCTGCGGCACCAGGTCATGATCAAC CAGTTCGTGCTGGCCGCGGGCTGCGCGGCCGACCAGGCGAAGCAGCTGCTGCAGGCGGCGCACT GGCAGTTCGAGACCGCCCTGAGCACGTTTTTCCAAGAAACCAACATTCCCAACAGCCACCACCA CCACCAGATGCAGATGGGCACCCCCAGCAACACACCGGCCACGCCGCCCAACTTCCCCGACGCC CTGGCTATGTTCTCCAAGCTCCGTGCCTCCGAGGGCCTGCAGAACGGCAGCAGCCCCATGACCG CCGTGGCCTGCTCCCCTCCTGCCAACTTCAGCCCCTTCTGGGCCTCGTCCCCGCCCAGCCACCA GGCCGCCTGGATCCCGCCCTCCTCCCCCACGGCCCACAGCTTCCACCACCTCCACCACCCACAG CCCACGTGGCCGCCTGGAGCCCAGCAGGCGGGCCCCCCGCAGAAAGCCATGGCTGCGGTGGACG GCCAGAGATGAGACTCGATGCCGCCGGGCGCGGGGCTGCAGCCGGGGCCGTCGAGGCCGTCGGG GGAGCTGGGGCGGGCGGGGGTTTCCTGAAGATCGCACTGGAAGATTTTATAAGAGAATTTTTGT GGGTGGGGGGCAGTAAACGTCCTGAGCCACTTGGGTCCTTCAGGAGTTTCTCTTCAGGCAAGTT TTTTTTTTTTCTCTTTTTAATATATAACGATAATATATATGAATATATAAAAATAACTAATGTA TGTGAGTATGGGGCTGGCTGACAGGGTGTTGTCCGCGGGGAAGGGTCGGGATCCTCCCCCCAGC CCCAGGGCAGGTGCTGGAAAGCCAGGGGGCCCGAACTTGGGGTCTGCTAGCTGCCTCCTCTCAG AGGTCACACCTTCTAGAAGCAGAAGGATGATCACCCCTCCACTCCAATGAGGGGTTGCAGGAGG GGCTCCCAGAGGTGCCGGTGGCCGCAGGTGGGGGGCTCTTGGCCATTGAGAGGCTCTCCCCACC CCGCTGGTGGCTGGCTCCTCTGTCACTCTCCAGTTCTTGTCACCTCTCCTGGTGTCGCCCGTCT CCAGCTAGGGGTGCAGGGCTTGTGTGGGACTCAAGAGCCGGCTCGGCCAAAGGCCCAGGCTCTG CTGGCGGGGGCCTGACCCCGCAGCCACCCTGCCTCTCTTCCTCTGTGTCTGCGGCGATGGTGGA GAGCTTTCCTTTGGGTTTTGGTCCCCAGTCAATCATCTCACCAGGGTGAAATTTTAATTTAAAA CTTAAAAGAGACTTTTCTAACTTC
hide sequence
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RefSeq Acc Id: |
XP_003358005 ⟸ XM_003357957 |
- Peptide Label: |
isoform X1 |
- UniProtKB: |
I3LEC8 (UniProtKB/TrEMBL), A0A4X1UY87 (UniProtKB/TrEMBL) |
- Sequence: |
MSVNMDELRHQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETNIPNSHHHHQMMGT PSNTPATPPNFPDALAMFSKLRASEGLQNGSSPMTAVACSPPANFSPFWASSPPSHQAAWIPPS SPTAHSFHHLHHPQPTWPPGAQQAGPPQKAMAAVDGQR
hide sequence
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RefSeq Acc Id: |
XP_005656979 ⟸ XM_005656922 |
- Peptide Label: |
isoform X2 |
- UniProtKB: |
A0A8D0UTP0 (UniProtKB/TrEMBL) |
- Sequence: |
MSVNMDELRHQVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQETNIPNSHHHHQMQMG TPSNTPATPPNFPDALAMFSKLRASEGLQNGSSPMTAVACSPPANFSPFWASSPPSHQAAWIPP SSPTAHSFHHLHHPQPTWPPGAQQAGPPQKAMAAVDGQR
hide sequence
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RefSeq Acc Id: |
ENSSSCP00000022416 ⟸ ENSSSCT00000026568 |
Additional Information
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