HERPUD2 (HERPUD family member 2) - Rat Genome Database

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Gene: HERPUD2 (HERPUD family member 2) Sus scrofa
Analyze
Symbol: HERPUD2
Name: HERPUD family member 2
RGD ID: 14204069
Description: INVOLVED IN endoplasmic reticulum unfolded protein response (inferred); response to unfolded protein (inferred); spermatogenesis (inferred); ASSOCIATED WITH genetic disease (ortholog); juvenile rheumatoid arthritis (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1838,284,520 - 38,326,311 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11838,284,520 - 38,326,323 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21842,181,620 - 42,212,621 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HERPUD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1838,284,520 - 38,326,311 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11838,284,520 - 38,326,323 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21842,181,620 - 42,212,621 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HERPUD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38735,632,659 - 35,695,135 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl735,632,659 - 35,697,459 (-)EnsemblGRCh38hg38GRCh38
GRCh37735,672,269 - 35,734,745 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36735,638,794 - 35,701,254 (-)NCBINCBI36Build 36hg18NCBI36
Celera735,656,891 - 35,718,541 (-)NCBICelera
Cytogenetic Map7p14.2NCBI
HuRef735,553,138 - 35,615,558 (-)NCBIHuRef
CHM1_1735,671,879 - 35,734,370 (-)NCBICHM1_1
T2T-CHM13v2.0735,773,637 - 35,840,411 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2735,711,081 - 35,772,820 (-)NCBI
Herpud2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39925,012,412 - 25,063,109 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl925,019,428 - 25,063,116 (-)EnsemblGRCm39 Ensembl
GRCm38925,108,126 - 25,151,813 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl925,108,132 - 25,151,820 (-)EnsemblGRCm38mm10GRCm38
MGSCv37924,912,574 - 24,956,280 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36924,858,540 - 24,901,918 (-)NCBIMGSCv36mm8
Celera922,367,443 - 22,411,134 (-)NCBICelera
Cytogenetic Map9A4NCBI
cM Map910.25NCBI
Herpud2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8831,849,216 - 31,894,219 (-)NCBIGRCr8
mRatBN7.2823,573,374 - 23,618,380 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl823,573,379 - 23,617,874 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx827,631,491 - 27,676,822 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0825,928,777 - 25,974,108 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0823,800,662 - 23,845,177 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0826,266,571 - 26,311,528 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl826,266,760 - 26,311,350 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0826,289,918 - 26,335,435 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4824,777,333 - 24,821,665 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1824,777,334 - 24,821,665 (-)NCBI
Celera825,143,615 - 25,187,927 (-)NCBICelera
Cytogenetic Map8q13NCBI
Herpud2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554607,461,025 - 7,497,495 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554607,461,025 - 7,495,242 (+)NCBIChiLan1.0ChiLan1.0
HERPUD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2640,458,013 - 40,524,425 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1788,782,747 - 88,849,160 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0736,259,315 - 36,321,705 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1736,494,568 - 36,556,481 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl736,494,153 - 36,556,481 (-)Ensemblpanpan1.1panPan2
HERPUD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11447,251,733 - 47,284,519 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1447,210,672 - 47,284,529 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1446,692,169 - 46,726,648 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01447,191,023 - 47,224,976 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1447,191,023 - 47,225,438 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11447,298,029 - 47,331,495 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01446,974,656 - 47,008,409 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01447,348,381 - 47,381,841 (-)NCBIUU_Cfam_GSD_1.0
Herpud2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511892,082,462 - 92,123,510 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647811,293,134 - 11,335,241 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647811,294,193 - 11,335,241 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HERPUD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12122,728,816 - 22,785,202 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2122,729,346 - 22,788,250 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604282,069,835 - 82,129,258 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Herpud2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474025,264,399 - 25,307,272 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474025,179,684 - 25,306,874 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HERPUD2
1005 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 6 3 3 5 2 21 2 3 3
Low 4 1 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000024969   ⟹   ENSSSCP00000027289
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1838,284,909 - 38,326,319 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000067303   ⟹   ENSSSCP00000072842
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1838,284,520 - 38,326,311 (+)Ensembl
RefSeq Acc Id: XM_021078631   ⟹   XP_020934290
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11838,284,520 - 38,326,323 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020934290   ⟸   XM_021078631
- UniProtKB: A0A4X1W5Y5 (UniProtKB/TrEMBL),   A0A5G2R6G3 (UniProtKB/TrEMBL),   I3LT45 (UniProtKB/TrEMBL),   A0A8D0VQ00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000027289   ⟸   ENSSSCT00000024969
RefSeq Acc Id: ENSSSCP00000072842   ⟸   ENSSSCT00000067303
Protein Domains
Ubiquitin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027389 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015063078 UniProtKB/TrEMBL
  ENSSSCG00025072597 UniProtKB/TrEMBL
  ENSSSCG00030015509 UniProtKB/TrEMBL
  ENSSSCG00035008628 UniProtKB/TrEMBL
  ENSSSCG00040068384 UniProtKB/TrEMBL
  ENSSSCG00045025461 UniProtKB/TrEMBL
  ENSSSCG00050046319 UniProtKB/TrEMBL
  ENSSSCG00055012459 UniProtKB/TrEMBL
  ENSSSCG00060041515 UniProtKB/TrEMBL
  ENSSSCG00065033652 UniProtKB/TrEMBL
  ENSSSCG00070029213 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000067303 ENTREZGENE
  ENSSSCT00000067303.2 UniProtKB/TrEMBL
  ENSSSCT00015084453.1 UniProtKB/TrEMBL
  ENSSSCT00015084514.1 UniProtKB/TrEMBL
  ENSSSCT00025099832.1 UniProtKB/TrEMBL
  ENSSSCT00025099918.1 UniProtKB/TrEMBL
  ENSSSCT00030021450.1 UniProtKB/TrEMBL
  ENSSSCT00030021455.1 UniProtKB/TrEMBL
  ENSSSCT00035010805.1 UniProtKB/TrEMBL
  ENSSSCT00035010810.1 UniProtKB/TrEMBL
  ENSSSCT00040093683.1 UniProtKB/TrEMBL
  ENSSSCT00045043401.1 UniProtKB/TrEMBL
  ENSSSCT00045043541.1 UniProtKB/TrEMBL
  ENSSSCT00050063027.1 UniProtKB/TrEMBL
  ENSSSCT00050063030.1 UniProtKB/TrEMBL
  ENSSSCT00055024608.1 UniProtKB/TrEMBL
  ENSSSCT00055024646.1 UniProtKB/TrEMBL
  ENSSSCT00060056278.1 UniProtKB/TrEMBL
  ENSSSCT00060056281.1 UniProtKB/TrEMBL
  ENSSSCT00065045760.1 UniProtKB/TrEMBL
  ENSSSCT00065045764.1 UniProtKB/TrEMBL
  ENSSSCT00070058635.1 UniProtKB/TrEMBL
  ENSSSCT00070058645.1 UniProtKB/TrEMBL
  ENSSSCT00070058646.1 UniProtKB/TrEMBL
InterPro HERPUD1/2 UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/TrEMBL
NCBI Gene HERPUD2 ENTREZGENE
PANTHER HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM-RESIDENT UBIQUITIN-LIKE DOMAIN MEMBER 2 PROTEIN UniProtKB/TrEMBL
  PTHR12943 UniProtKB/TrEMBL
Pfam ubiquitin UniProtKB/TrEMBL
PROSITE UBIQUITIN_2 UniProtKB/TrEMBL
SMART UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A4X1W5Y5 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R6G3 ENTREZGENE
  A0A8D0IW14_PIG UniProtKB/TrEMBL
  A0A8D0VQ00 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1I670_PIG UniProtKB/TrEMBL
  I3LT45 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A5G2R6G3 UniProtKB/TrEMBL
VGNC ID VGNC:88853 ENTREZGENE