SAP30BP (SAP30 binding protein) - Rat Genome Database

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Gene: SAP30BP (SAP30 binding protein) Sus scrofa
Analyze
Symbol: SAP30BP
Name: SAP30 binding protein
RGD ID: 14203661
Description: INVOLVED IN modulation by host of symbiont transcription (inferred); positive regulation of histone deacetylation (inferred); regulation of transcription, DNA-templated (inferred); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN intermediate filament cytoskeleton (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: SAP30-binding protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,695,257 - 5,732,226 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,695,254 - 5,732,246 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,641,654 - 5,678,641 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
SAP30BP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,695,257 - 5,732,226 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,695,254 - 5,732,246 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,641,654 - 5,678,641 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SAP30BP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1775,667,251 - 75,708,062 (+)EnsemblGRCh38hg38GRCh38
GRCh381775,667,311 - 75,708,059 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371773,663,418 - 73,704,139 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361771,174,994 - 71,215,734 (+)NCBINCBI36hg18NCBI36
Celera1770,253,482 - 70,294,229 (+)NCBI
Cytogenetic Map17q25.1NCBI
HuRef1769,087,224 - 69,127,975 (+)NCBIHuRef
CHM1_11773,728,123 - 73,768,856 (+)NCBICHM1_1
Sap30bp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,824,403 - 115,856,360 (+)NCBIGRCm39mm39
GRCm39 Ensembl11115,824,108 - 115,857,551 (+)Ensembl
GRCm3811115,933,578 - 115,965,534 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,933,282 - 115,966,725 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711115,794,973 - 115,826,848 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611115,749,749 - 115,781,624 (+)NCBImm8
Celera11127,696,719 - 127,728,590 (+)NCBICelera
Cytogenetic Map11E2NCBI
Sap30bp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210101,165,777 - 101,198,503 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl10101,165,856 - 101,198,502 (+)Ensembl
Rnor_6.010104,483,011 - 104,514,513 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,483,042 - 104,515,684 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010103,770,845 - 103,802,350 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410106,039,460 - 106,070,965 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1099,740,759 - 99,772,259 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Sap30bp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555066,535,566 - 6,575,624 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555066,535,566 - 6,574,690 (-)NCBIChiLan1.0ChiLan1.0
SAP30BP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11775,168,180 - 75,208,875 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1775,168,185 - 75,208,840 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01769,618,005 - 69,658,716 (+)NCBIMhudiblu_PPA_v0panPan3
SAP30BP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,866,613 - 4,902,692 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,867,878 - 4,902,617 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,546,839 - 5,582,915 (-)NCBI
ROS_Cfam_1.095,537,436 - 5,573,696 (-)NCBI
ROS_Cfam_1.0 Ensembl95,537,439 - 5,573,642 (-)Ensembl
UMICH_Zoey_3.195,576,878 - 5,613,112 (-)NCBI
UNSW_CanFamBas_1.095,686,957 - 5,723,022 (-)NCBI
UU_Cfam_GSD_1.095,747,840 - 5,784,085 (-)NCBI
LOC101961847
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,508,055 - 5,548,938 (-)NCBI
SpeTri2.0NW_004936594862,822 - 903,900 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103243041
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11645,970,535 - 46,013,168 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1645,968,900 - 46,012,958 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607716,729,871 - 16,772,875 (-)NCBIVero_WHO_p1.0
Sap30bp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248015,568,359 - 5,605,765 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 10 2
Low 9 4 3 4 2 13 2 1 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000018730   ⟹   ENSSSCP00000018228
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl125,695,257 - 5,732,226 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000023832   ⟹   ENSSSCP00000019884
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl125,695,265 - 5,732,212 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000070353   ⟹   ENSSSCP00000067746
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl125,695,257 - 5,732,174 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000081553   ⟹   ENSSSCP00000066127
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl125,695,266 - 5,732,213 (-)Ensembl
RefSeq Acc Id: XM_003131203   ⟹   XP_003131251
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,695,254 - 5,732,214 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003357968   ⟹   XP_003358016
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,695,254 - 5,732,246 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003131251 (Get FASTA)   NCBI Sequence Viewer  
  XP_003358016 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003358016   ⟸   XM_003357968
- Peptide Label: isoform X1
- UniProtKB: F1RVY5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003131251   ⟸   XM_003131203
- Peptide Label: isoform X2
- UniProtKB: I3L780 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000067746   ⟸   ENSSSCT00000070353
RefSeq Acc Id: ENSSSCP00000066127   ⟸   ENSSSCT00000081553
RefSeq Acc Id: ENSSSCP00000018228   ⟸   ENSSSCT00000018730
RefSeq Acc Id: ENSSSCP00000019884   ⟸   ENSSSCT00000023832


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017205 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070020987 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000018228 UniProtKB/TrEMBL
  ENSSSCP00000019884 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000066127 UniProtKB/TrEMBL
  ENSSSCP00000067746 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070035013 UniProtKB/TrEMBL
  ENSSSCP00070035022 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018730 UniProtKB/TrEMBL
  ENSSSCT00000023832 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000070353 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000081553 UniProtKB/TrEMBL
  ENSSSCT00070041702 UniProtKB/TrEMBL
  ENSSSCT00070041711 UniProtKB/TrEMBL
InterPro SAP30BP UniProtKB/TrEMBL
KEGG Report ssc:100523815 UniProtKB/TrEMBL
NCBI Gene SAP30BP ENTREZGENE
PANTHER PTHR13464 UniProtKB/TrEMBL
Pfam HCNGP UniProtKB/TrEMBL
UniProt A0A481C7C1_PIG UniProtKB/TrEMBL
  A0A4X1UXM6_PIG UniProtKB/TrEMBL
  A0A4X1V0B1_PIG UniProtKB/TrEMBL
  A0A5G2QMM9_PIG UniProtKB/TrEMBL
  F1RVY5 ENTREZGENE, UniProtKB/TrEMBL
  I3L780 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92576 ENTREZGENE