WDR36 (WD repeat domain 36) - Rat Genome Database

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Gene: WDR36 (WD repeat domain 36) Sus scrofa
Analyze
Symbol: WDR36
Name: WD repeat domain 36
RGD ID: 14203321
Description: INVOLVED IN regulation of axon extension (ortholog); retina homeostasis (ortholog); ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH asthma (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN nucleolus (inferred); Pwp2p-containing subcomplex of 90S preribosome (inferred); small-subunit processome (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat-containing protein 36
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2115,861,811 - 115,906,304 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12115,835,099 - 115,907,643 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22120,387,897 - 120,434,048 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
WDR36
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2115,861,811 - 115,906,304 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12115,835,099 - 115,907,643 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22120,387,897 - 120,434,048 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR36
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385111,092,348 - 111,130,502 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5111,092,321 - 111,130,502 (+)EnsemblGRCh38hg38GRCh38
GRCh375110,428,046 - 110,466,200 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365110,455,769 - 110,494,099 (+)NCBINCBI36Build 36hg18NCBI36
Build 345110,455,768 - 110,490,556NCBI
Celera5106,373,809 - 106,412,142 (+)NCBICelera
Cytogenetic Map5q22.1NCBI
HuRef5105,606,927 - 105,645,260 (+)NCBIHuRef
CHM1_15109,861,203 - 109,899,534 (+)NCBICHM1_1
T2T-CHM13v2.05111,602,982 - 111,641,140 (+)NCBIT2T-CHM13v2.0
Wdr36
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391832,970,241 - 33,000,008 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1832,970,278 - 33,000,647 (+)EnsemblGRCm39 Ensembl
GRCm381832,837,188 - 32,866,955 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1832,837,225 - 32,867,594 (+)EnsemblGRCm38mm10GRCm38
MGSCv371832,996,879 - 33,026,074 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361832,980,263 - 32,996,449 (+)NCBIMGSCv36mm8
Celera1833,308,368 - 33,337,595 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.13NCBI
Wdr36
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81824,747,812 - 24,783,704 (+)NCBIGRCr8
mRatBN7.21824,473,657 - 24,501,773 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1824,473,663 - 24,508,092 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1824,601,712 - 24,629,828 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01825,366,538 - 25,394,780 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01824,696,732 - 24,724,848 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01825,637,475 - 25,665,801 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1825,637,588 - 25,665,639 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01825,352,658 - 25,382,094 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41825,294,369 - 25,322,294 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1824,221,402 - 24,249,570 (+)NCBICelera
Cytogenetic Map18p12NCBI
Wdr36
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554183,988,073 - 4,023,974 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554183,988,073 - 4,023,425 (-)NCBIChiLan1.0ChiLan1.0
WDR36
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24106,362,109 - 106,400,282 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15104,515,764 - 104,553,937 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05106,461,658 - 106,499,837 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15112,264,403 - 112,302,549 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5112,264,403 - 112,302,549 (+)Ensemblpanpan1.1panPan2
WDR36
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.131,451,543 - 1,494,474 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl31,451,555 - 1,494,438 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha32,856,390 - 2,899,308 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.031,299,876 - 1,385,153 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl31,299,867 - 1,385,127 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.131,289,010 - 1,331,917 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.031,290,757 - 1,333,666 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.031,455,493 - 1,498,428 (-)NCBIUU_Cfam_GSD_1.0
Wdr36
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213156,063,294 - 156,097,421 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365315,513,082 - 5,548,501 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365315,513,082 - 5,546,515 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR36
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12314,427,459 - 14,464,125 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2314,427,487 - 14,466,704 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603464,015,170 - 64,052,633 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr36
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474328,903,093 - 28,942,978 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474328,903,013 - 28,944,353 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in WDR36
1612 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2 3 4 1 4 1 3
Low 9 2 1 1 19 2 2
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000015514   ⟹   ENSSSCP00000015104
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2115,862,033 - 115,906,304 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000051417   ⟹   ENSSSCP00000034133
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2115,861,811 - 115,906,304 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000051665   ⟹   ENSSSCP00000034571
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2115,861,967 - 115,905,614 (+)Ensembl
RefSeq Acc Id: XM_003354239   ⟹   XP_003354287
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12115,835,099 - 115,907,643 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003354287   ⟸   XM_003354239
- UniProtKB: A0A4X1TXE2 (UniProtKB/TrEMBL),   A0A8D0XI13 (UniProtKB/TrEMBL),   A0A8D1I0R8 (UniProtKB/TrEMBL),   A0A8D1NTW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000015104   ⟸   ENSSSCT00000015514
RefSeq Acc Id: ENSSSCP00000034133   ⟸   ENSSSCT00000051417
RefSeq Acc Id: ENSSSCP00000034571   ⟸   ENSSSCT00000051665

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000014199 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005040834 UniProtKB/TrEMBL
  ENSSSCG00015034556 UniProtKB/TrEMBL
  ENSSSCG00025045977 UniProtKB/TrEMBL
  ENSSSCG00030055198 UniProtKB/TrEMBL
  ENSSSCG00035023869 UniProtKB/TrEMBL
  ENSSSCG00040072136 UniProtKB/TrEMBL
  ENSSSCG00045022563 UniProtKB/TrEMBL
  ENSSSCG00050071645 UniProtKB/TrEMBL
  ENSSSCG00055025176 UniProtKB/TrEMBL
  ENSSSCG00060018564 UniProtKB/TrEMBL
  ENSSSCG00065018258 UniProtKB/TrEMBL
  ENSSSCG00070013038 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000015514.5 UniProtKB/TrEMBL
  ENSSSCT00000051417 ENTREZGENE
  ENSSSCT00000051417.3 UniProtKB/TrEMBL
  ENSSSCT00000051665.3 UniProtKB/TrEMBL
  ENSSSCT00005065302.1 UniProtKB/TrEMBL
  ENSSSCT00005065334.1 UniProtKB/TrEMBL
  ENSSSCT00005065359.1 UniProtKB/TrEMBL
  ENSSSCT00015046093.1 UniProtKB/TrEMBL
  ENSSSCT00025062774.1 UniProtKB/TrEMBL
  ENSSSCT00025063445.1 UniProtKB/TrEMBL
  ENSSSCT00030076912.1 UniProtKB/TrEMBL
  ENSSSCT00035031329.1 UniProtKB/TrEMBL
  ENSSSCT00035031344.1 UniProtKB/TrEMBL
  ENSSSCT00040099437.1 UniProtKB/TrEMBL
  ENSSSCT00040099649.1 UniProtKB/TrEMBL
  ENSSSCT00045038500.1 UniProtKB/TrEMBL
  ENSSSCT00050097719.1 UniProtKB/TrEMBL
  ENSSSCT00050097745.1 UniProtKB/TrEMBL
  ENSSSCT00055049782.1 UniProtKB/TrEMBL
  ENSSSCT00055050273.1 UniProtKB/TrEMBL
  ENSSSCT00060024927.1 UniProtKB/TrEMBL
  ENSSSCT00065024294.1 UniProtKB/TrEMBL
  ENSSSCT00065024299.1 UniProtKB/TrEMBL
  ENSSSCT00070025520.1 UniProtKB/TrEMBL
  ENSSSCT00070025539.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro Quinoprotein_ADH-like_supfam UniProtKB/TrEMBL
  SSU_processome_Utp21 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100627271 UniProtKB/TrEMBL
NCBI Gene WDR36 ENTREZGENE
PANTHER WD REPEAT-CONTAINING PROTEIN 36 UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 36 UniProtKB/TrEMBL
Pfam Utp21 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP Putative isomerase YbhE UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
  SSF50998 UniProtKB/TrEMBL
UniProt A0A286ZRP6_PIG UniProtKB/TrEMBL
  A0A286ZSG4_PIG UniProtKB/TrEMBL
  A0A480Y218_PIG UniProtKB/TrEMBL
  A0A4X1TXE2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U0F9_PIG UniProtKB/TrEMBL
  A0A8D0KL04_PIG UniProtKB/TrEMBL
  A0A8D0NKN0_PIG UniProtKB/TrEMBL
  A0A8D0XI13 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1I0R8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NTW3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8D0ZAS7 UniProtKB/TrEMBL
  F1RLI4 UniProtKB/TrEMBL
VGNC ID VGNC:94917 ENTREZGENE