SEC23IP (SEC23 interacting protein) - Rat Genome Database

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Gene: SEC23IP (SEC23 interacting protein) Sus scrofa
Analyze
Symbol: SEC23IP
Name: SEC23 interacting protein
RGD ID: 14202868
Description: ENCODES a protein that exhibits metal ion binding (inferred); phospholipase activity (inferred); INVOLVED IN acrosome assembly (ortholog); single fertilization (ortholog); spermatid development (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum exit site (ortholog); perinuclear endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14129,758,288 - 129,810,642 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114129,758,279 - 129,810,642 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214141,285,475 - 141,346,818 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SEC23IP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14129,758,288 - 129,810,642 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114129,758,279 - 129,810,642 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214141,285,475 - 141,346,818 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEC23IP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810119,892,730 - 119,944,657 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10119,892,707 - 119,944,657 (+)EnsemblGRCh38hg38GRCh38
GRCh3710121,652,242 - 121,704,169 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610121,642,213 - 121,691,235 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410121,642,212 - 121,691,235NCBI
Celera10115,383,262 - 115,432,278 (+)NCBICelera
Cytogenetic Map10q26.11-q26.12NCBI
HuRef10115,281,153 - 115,333,167 (+)NCBIHuRef
CHM1_110121,936,950 - 121,989,022 (+)NCBICHM1_1
T2T-CHM13v2.010120,790,271 - 120,842,184 (+)NCBIT2T-CHM13v2.0
Sec23ip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397128,346,667 - 128,386,560 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7128,346,667 - 128,386,560 (+)EnsemblGRCm39 Ensembl
GRCm387128,744,862 - 128,784,836 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7128,744,943 - 128,784,836 (+)EnsemblGRCm38mm10GRCm38
MGSCv377135,888,384 - 135,928,350 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367128,536,129 - 128,574,935 (+)NCBIMGSCv36mm8
Celera7128,584,210 - 128,623,989 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map770.51NCBI
Sec23ip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81192,751,379 - 192,794,345 (+)NCBIGRCr8
mRatBN7.21183,320,950 - 183,363,944 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1183,321,075 - 183,363,920 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1191,671,438 - 191,713,745 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01198,857,519 - 198,899,828 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01191,527,749 - 191,570,157 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01200,167,075 - 200,210,362 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1200,167,169 - 200,210,377 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01207,214,612 - 207,257,767 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,999,550 - 188,042,408 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11188,149,514 - 188,187,683 (+)NCBI
Celera1180,967,104 - 181,009,305 (+)NCBICelera
Cytogenetic Map1q37NCBI
Sec23ip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955551695,026 - 746,669 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955551695,026 - 746,359 (+)NCBIChiLan1.0ChiLan1.0
SEC23IP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28131,746,972 - 131,798,988 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110131,752,326 - 131,804,344 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010116,460,187 - 116,510,830 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110119,876,573 - 119,927,321 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10119,876,408 - 119,928,064 (+)Ensemblpanpan1.1panPan2
SEC23IP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12830,007,780 - 30,047,513 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2830,007,774 - 30,046,785 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2830,149,350 - 30,189,081 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02830,539,211 - 30,579,379 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2830,539,245 - 30,579,379 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12830,091,651 - 30,131,366 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02830,114,471 - 30,154,231 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02830,307,058 - 30,346,795 (+)NCBIUU_Cfam_GSD_1.0
Sec23ip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721316,286,129 - 16,329,708 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364869,231,351 - 9,275,778 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364869,231,610 - 9,275,555 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC23IP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19112,685,033 - 112,734,520 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9112,684,885 - 112,735,082 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604873,960,612 - 74,010,649 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sec23ip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473726,876,340 - 26,923,217 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473726,848,090 - 26,923,134 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SEC23IP
2039 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 5 2 19 2 3 3
Low 2 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000011691   ⟹   ENSSSCP00000011389
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14129,758,336 - 129,810,642 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000073324   ⟹   ENSSSCP00000064326
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14129,758,288 - 129,783,338 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000096724   ⟹   ENSSSCP00000080672
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14129,758,288 - 129,781,586 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000098623   ⟹   ENSSSCP00000078334
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14129,758,336 - 129,810,642 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000100243   ⟹   ENSSSCP00000077075
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14129,758,336 - 129,810,642 (+)Ensembl
RefSeq Acc Id: XM_021073464   ⟹   XP_020929123
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114129,758,279 - 129,810,642 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020929123   ⟸   XM_021073464
- UniProtKB: A0A480SCI5 (UniProtKB/TrEMBL),   A0A8D0SBL6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000011389   ⟸   ENSSSCT00000011691
RefSeq Acc Id: ENSSSCP00000064326   ⟸   ENSSSCT00000073324
RefSeq Acc Id: ENSSSCP00000078334   ⟸   ENSSSCT00000098623
RefSeq Acc Id: ENSSSCP00000080672   ⟸   ENSSSCT00000096724
RefSeq Acc Id: ENSSSCP00000077075   ⟸   ENSSSCT00000100243
Protein Domains
DDHD   WWE


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010690 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005008148 UniProtKB/TrEMBL
  ENSSSCG00025050180 UniProtKB/TrEMBL
  ENSSSCG00045021581 UniProtKB/TrEMBL
  ENSSSCG00070003315 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011691 ENTREZGENE
  ENSSSCT00000011691.4 UniProtKB/TrEMBL
  ENSSSCT00000073324.2 UniProtKB/TrEMBL
  ENSSSCT00000096724.1 UniProtKB/TrEMBL
  ENSSSCT00000098623.1 UniProtKB/TrEMBL
  ENSSSCT00000100243.1 UniProtKB/TrEMBL
  ENSSSCT00005012790.1 UniProtKB/TrEMBL
  ENSSSCT00005012844.1 UniProtKB/TrEMBL
  ENSSSCT00005012902.1 UniProtKB/TrEMBL
  ENSSSCT00005013039.1 UniProtKB/TrEMBL
  ENSSSCT00005013070.1 UniProtKB/TrEMBL
  ENSSSCT00005013120.1 UniProtKB/TrEMBL
  ENSSSCT00025068981.1 UniProtKB/TrEMBL
  ENSSSCT00045037245.1 UniProtKB/TrEMBL
  ENSSSCT00045037688.1 UniProtKB/TrEMBL
  ENSSSCT00070006302.1 UniProtKB/TrEMBL
  ENSSSCT00070006310.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro DDHD_dom UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  SEC23IP_SAM UniProtKB/TrEMBL
  WWE-dom UniProtKB/TrEMBL
NCBI Gene SEC23IP ENTREZGENE
PANTHER PA-PL1 PHOSPHOLIPASE FAMILY UniProtKB/TrEMBL
  SEC23-INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam DDHD UniProtKB/TrEMBL
  SAM_1 UniProtKB/TrEMBL
  WWE UniProtKB/TrEMBL
PROSITE DDHD UniProtKB/TrEMBL
SMART DDHD UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
UniProt A0A480SCI5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SSF7_PIG UniProtKB/TrEMBL
  A0A4X1SSP3_PIG UniProtKB/TrEMBL
  A0A5G2QIQ8_PIG UniProtKB/TrEMBL
  A0A8D0I236_PIG UniProtKB/TrEMBL
  A0A8D0I4D1_PIG UniProtKB/TrEMBL
  A0A8D0IED1_PIG UniProtKB/TrEMBL
  A0A8D0LG67_PIG UniProtKB/TrEMBL
  A0A8D0LG73_PIG UniProtKB/TrEMBL
  A0A8D0SBL6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FDZ5_PIG UniProtKB/TrEMBL
  A0A8W4FFY8_PIG UniProtKB/TrEMBL
  A0A8W4FP27_PIG UniProtKB/TrEMBL
  F1S409_PIG UniProtKB/TrEMBL
VGNC ID VGNC:92675 ENTREZGENE