NOL4L (nucleolar protein 4 like) - Rat Genome Database

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Gene: NOL4L (nucleolar protein 4 like) Sus scrofa
Analyze
Symbol: NOL4L
Name: nucleolar protein 4 like
RGD ID: 14202733
Description: ENCODES a protein that exhibits NF-kappaB binding (inferred); INVOLVED IN negative regulation of DNA-templated transcription (inferred); tumor necrosis factor-mediated signaling pathway (inferred); ASSOCIATED WITH genetic disease (ortholog); immunodeficiency-centromeric instability-facial anomalies syndrome 1 (ortholog); FOUND IN cytosol (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C17H20orf112; nucleolar protein 4-like; uncharacterized protein C20orf112 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1736,073,655 - 36,201,145 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11736,070,836 - 36,201,035 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21740,987,898 - 41,067,223 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
nucleoplasm  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
NOL4L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1736,073,655 - 36,201,145 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11736,070,836 - 36,201,035 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21740,987,898 - 41,067,223 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NOL4L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382032,443,059 - 32,585,333 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2032,443,059 - 32,585,333 (-)EnsemblGRCh38hg38GRCh38
GRCh372031,030,862 - 31,173,135 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362030,498,330 - 30,534,849 (-)NCBINCBI36Build 36hg18NCBI36
Build 342030,498,329 - 30,534,849NCBI
Celera2027,786,886 - 27,827,327 (-)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2027,820,335 - 27,962,388 (-)NCBIHuRef
CHM1_12030,935,784 - 31,077,756 (-)NCBICHM1_1
T2T-CHM13v2.02034,167,910 - 34,310,868 (-)NCBIT2T-CHM13v2.0
Nol4l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392153,249,381 - 153,371,869 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2153,249,382 - 153,371,891 (-)EnsemblGRCm39 Ensembl
GRCm382153,407,461 - 153,530,239 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2153,407,462 - 153,529,971 (-)EnsemblGRCm38mm10GRCm38
MGSCv372153,233,197 - 153,355,707 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362153,098,907 - 153,175,224 (-)NCBIMGSCv36mm8
Celera2159,249,852 - 159,371,922 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.41NCBI
Nol4l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83162,345,059 - 162,467,849 (-)NCBIGRCr8
mRatBN7.23141,884,840 - 142,007,668 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3141,884,840 - 142,008,976 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03148,905,677 - 148,940,426 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3148,909,826 - 148,932,878 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03155,164,662 - 155,199,419 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43143,774,195 - 143,904,844 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3140,630,872 - 140,713,937 (-)NCBICelera
Cytogenetic Map3q41NCBI
Nol4l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542228,583,383 - 28,658,983 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542228,575,749 - 28,658,983 (+)NCBIChiLan1.0ChiLan1.0
NOL4L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22138,134,606 - 38,277,092 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12038,127,705 - 38,270,191 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02028,731,600 - 28,874,116 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12029,856,168 - 29,948,479 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2029,856,168 - 29,940,084 (-)Ensemblpanpan1.1panPan2
NOL4L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12421,808,726 - 21,939,596 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2421,812,659 - 21,940,039 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2421,456,319 - 21,586,607 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02422,497,864 - 22,628,090 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2422,497,867 - 22,628,689 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12421,773,470 - 21,904,028 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02421,881,601 - 22,012,017 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02422,312,374 - 22,442,940 (-)NCBIUU_Cfam_GSD_1.0
Nol4l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640170,869,425 - 170,948,065 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648519,300,110 - 19,371,672 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648519,300,789 - 19,338,374 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOL4L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1236,814,605 - 36,953,902 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl236,819,120 - 36,953,805 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605089,947,584 - 90,095,558 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nol4l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474168,002 - 185,641 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474168,002 - 185,545 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NOL4L
2421 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 3 3 5 22 2 3 3
Below cutoff 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000057453   ⟹   ENSSSCP00000035859
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1736,073,655 - 36,201,145 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000083628   ⟹   ENSSSCP00000069470
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1736,091,748 - 36,201,145 (-)Ensembl
RefSeq Acc Id: XM_013985246   ⟹   XP_013840700
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11736,070,836 - 36,101,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013985247   ⟹   XP_013840701
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11736,070,836 - 36,100,891 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021077429   ⟹   XP_020933088
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11736,070,836 - 36,201,035 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021077430   ⟹   XP_020933089
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11736,070,836 - 36,110,279 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021077431   ⟹   XP_020933090
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11736,070,836 - 36,109,259 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020933088   ⟸   XM_021077429
- Peptide Label: isoform X1
- UniProtKB: A0A286ZWH8 (UniProtKB/TrEMBL),   A0A8D1AR15 (UniProtKB/TrEMBL),   A0A4X1SX05 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020933089   ⟸   XM_021077430
- Peptide Label: isoform X2
- UniProtKB: A0A8D1TC72 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020933090   ⟸   XM_021077431
- Peptide Label: isoform X2
- UniProtKB: A0A8D1TC72 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013840700   ⟸   XM_013985246
- Peptide Label: isoform X2
- UniProtKB: A0A8D1TC72 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013840701   ⟸   XM_013985247
- Peptide Label: isoform X2
- UniProtKB: A0A8D1TC72 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000069470   ⟸   ENSSSCT00000083628
RefSeq Acc Id: ENSSSCP00000035859   ⟸   ENSSSCT00000057453
Protein Domains
COMM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007249 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005021194 UniProtKB/TrEMBL
  ENSSSCG00025059790 UniProtKB/TrEMBL
  ENSSSCG00025060233 UniProtKB/TrEMBL
  ENSSSCG00030055497 UniProtKB/TrEMBL
  ENSSSCG00035067619 UniProtKB/TrEMBL
  ENSSSCG00040011116 UniProtKB/TrEMBL
  ENSSSCG00045027232 UniProtKB/TrEMBL
  ENSSSCG00050030376 UniProtKB/TrEMBL
  ENSSSCG00055012559 UniProtKB/TrEMBL
  ENSSSCG00055012679 UniProtKB/TrEMBL
  ENSSSCG00060055735 UniProtKB/TrEMBL
  ENSSSCG00060055988 UniProtKB/TrEMBL
  ENSSSCG00065072980 UniProtKB/TrEMBL
  ENSSSCG00070004488 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000057453 ENTREZGENE
  ENSSSCT00000057453.3 UniProtKB/TrEMBL
  ENSSSCT00000083628.2 UniProtKB/TrEMBL
  ENSSSCT00005033552.1 UniProtKB/TrEMBL
  ENSSSCT00005033656.1 UniProtKB/TrEMBL
  ENSSSCT00005033703.1 UniProtKB/TrEMBL
  ENSSSCT00025082173.1 UniProtKB/TrEMBL
  ENSSSCT00025082675.1 UniProtKB/TrEMBL
  ENSSSCT00025082893.1 UniProtKB/TrEMBL
  ENSSSCT00030077334.1 UniProtKB/TrEMBL
  ENSSSCT00030077345.1 UniProtKB/TrEMBL
  ENSSSCT00030077415.1 UniProtKB/TrEMBL
  ENSSSCT00030077490.1 UniProtKB/TrEMBL
  ENSSSCT00030077573.1 UniProtKB/TrEMBL
  ENSSSCT00030077588.1 UniProtKB/TrEMBL
  ENSSSCT00035091217.1 UniProtKB/TrEMBL
  ENSSSCT00035091256.1 UniProtKB/TrEMBL
  ENSSSCT00035091317.1 UniProtKB/TrEMBL
  ENSSSCT00035091405.1 UniProtKB/TrEMBL
  ENSSSCT00035091438.1 UniProtKB/TrEMBL
  ENSSSCT00040014564.1 UniProtKB/TrEMBL
  ENSSSCT00040014604.1 UniProtKB/TrEMBL
  ENSSSCT00045046362.1 UniProtKB/TrEMBL
  ENSSSCT00045046524.1 UniProtKB/TrEMBL
  ENSSSCT00050040827.1 UniProtKB/TrEMBL
  ENSSSCT00050040831.1 UniProtKB/TrEMBL
  ENSSSCT00050040847.1 UniProtKB/TrEMBL
  ENSSSCT00050040865.1 UniProtKB/TrEMBL
  ENSSSCT00050040880.1 UniProtKB/TrEMBL
  ENSSSCT00050040884.1 UniProtKB/TrEMBL
  ENSSSCT00055024811.1 UniProtKB/TrEMBL
  ENSSSCT00055024964.1 UniProtKB/TrEMBL
  ENSSSCT00055025058.1 UniProtKB/TrEMBL
  ENSSSCT00055025111.1 UniProtKB/TrEMBL
  ENSSSCT00060075957.1 UniProtKB/TrEMBL
  ENSSSCT00060076277.1 UniProtKB/TrEMBL
  ENSSSCT00060076284.1 UniProtKB/TrEMBL
  ENSSSCT00065100386.1 UniProtKB/TrEMBL
  ENSSSCT00065100409.1 UniProtKB/TrEMBL
  ENSSSCT00065100445.1 UniProtKB/TrEMBL
  ENSSSCT00065100488.1 UniProtKB/TrEMBL
  ENSSSCT00065100500.1 UniProtKB/TrEMBL
  ENSSSCT00070008497.1 UniProtKB/TrEMBL
  ENSSSCT00070008507.1 UniProtKB/TrEMBL
InterPro COMM UniProtKB/TrEMBL
  COMMD4/6/7/8 UniProtKB/TrEMBL
  NOL4/NOL4L UniProtKB/TrEMBL
NCBI Gene NOL4L ENTREZGENE
PANTHER COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER UniProtKB/TrEMBL
  COMM DOMAIN-CONTAINING PROTEIN 7 UniProtKB/TrEMBL
  PTHR12449 UniProtKB/TrEMBL
  PTHR12449:SF19 UniProtKB/TrEMBL
Pfam COMM_domain UniProtKB/TrEMBL
  COMM_HN UniProtKB/TrEMBL
UniProt A0A286ZWH8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SX05 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SX10_PIG UniProtKB/TrEMBL
  A0A5G2R5P7_PIG UniProtKB/TrEMBL
  A0A8D0J537_PIG UniProtKB/TrEMBL
  A0A8D0J836_PIG UniProtKB/TrEMBL
  A0A8D0J860_PIG UniProtKB/TrEMBL
  A0A8D0ST04_PIG UniProtKB/TrEMBL
  A0A8D1AR15 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CCU3_PIG UniProtKB/TrEMBL
  A0A8D1TC72 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2CGR6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:107160 ENTREZGENE