FSCN3 (fascin actin-bundling protein 3) - Rat Genome Database
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Gene: FSCN3 (fascin actin-bundling protein 3) Sus scrofa
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Symbol: FSCN3
Name: fascin actin-bundling protein 3
RGD ID: 14202631
Description: ENCODES a protein that exhibits protein-macromolecule adaptor activity (inferred); INVOLVED IN spermatid development (inferred); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: fascin 3; fascin homolog 3, actin-bundling protein, testicular; fascin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1820,686,746 - 20,693,552 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11820,684,621 - 20,693,552 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21821,688,295 - 21,697,317 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:17065803  


Genomics

Comparative Map Data
FSCN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1820,686,746 - 20,693,552 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11820,684,621 - 20,693,552 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21821,688,295 - 21,697,317 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FSCN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl7127,591,409 - 127,602,144 (+)EnsemblGRCh38hg38GRCh38
GRCh387127,593,736 - 127,602,144 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh377127,233,790 - 127,242,198 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh377127,233,689 - 127,241,851 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367127,020,925 - 127,029,079 (+)NCBINCBI36hg18NCBI36
Build 347126,827,639 - 126,835,794NCBI
Celera7122,037,417 - 122,045,564 (+)NCBI
Cytogenetic Map7q32.1NCBI
HuRef7121,594,759 - 121,602,743 (+)NCBIHuRef
CHM1_17127,166,986 - 127,175,152 (+)NCBICHM1_1
CRA_TCAGchr7v27126,617,134 - 126,625,289 (+)NCBI
Fscn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39628,427,869 - 28,438,621 (+)NCBIGRCm39mm39
GRCm38628,427,870 - 28,438,622 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl628,427,789 - 28,438,622 (+)EnsemblGRCm38mm10GRCm38
MGSCv37628,377,901 - 28,388,622 (+)NCBIGRCm37mm9NCBIm37
MGSCv36628,377,911 - 28,388,632 (+)NCBImm8
Celera628,434,941 - 28,445,662 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
Fscn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2457,042,797 - 57,052,224 (+)NCBI
Rnor_6.0 Ensembl455,720,010 - 55,729,457 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0455,719,976 - 55,729,442 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0455,467,449 - 55,476,891 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4455,298,103 - 55,307,523 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1455,548,259 - 55,557,678 (+)NCBI
Celera452,154,383 - 52,163,752 (+)NCBICelera
Cytogenetic Map4q22NCBI
Fscn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554798,648,582 - 8,654,493 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554798,649,022 - 8,656,899 (+)NCBIChiLan1.0ChiLan1.0
FSCN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17132,244,268 - 132,252,312 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7132,244,268 - 132,250,913 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07119,589,219 - 119,597,360 (+)NCBIMhudiblu_PPA_v0panPan3
FSCN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl148,722,069 - 8,730,729 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1148,719,857 - 8,730,881 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Fscn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647914,794,876 - 14,803,549 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FSCN3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12196,407,983 - 96,416,313 (+)NCBI
ChlSab1.1 Ensembl2196,409,005 - 96,414,922 (+)Ensembl
Fscn3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247838,345,467 - 8,356,973 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

reproductive system
High
Medium
Low
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000018064   ⟹   ENSSSCP00000017576
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1820,686,746 - 20,693,552 (-)Ensembl
RefSeq Acc Id: NM_001044547   ⟹   NP_001038012
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11820,684,621 - 20,693,552 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001038012 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABC54733 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001038012   ⟸   NM_001044547
- UniProtKB: Q2I373 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000017576   ⟸   ENSSSCT00000018064
Protein Domains
Fascin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016592 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070028240 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000017576 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070048118 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018064 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070056635 UniProtKB/TrEMBL
InterPro Actin-crosslinking UniProtKB/TrEMBL
  Fascin UniProtKB/TrEMBL
  Fascin-domain UniProtKB/TrEMBL
  Fascin_metazoans UniProtKB/TrEMBL
  FSCN3 UniProtKB/TrEMBL
KEGG Report ssc:733598 UniProtKB/TrEMBL
NCBI Gene FSCN3 ENTREZGENE
PANTHER PTHR10551 UniProtKB/TrEMBL
  PTHR10551:SF1 UniProtKB/TrEMBL
Pfam Fascin UniProtKB/TrEMBL
PIRSF Fascin UniProtKB/TrEMBL
Superfamily-SCOP SSF50405 UniProtKB/TrEMBL
UniProt A0A4X1VWI1_PIG UniProtKB/TrEMBL
  Q2I373 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1SML2 UniProtKB/TrEMBL
VGNC ID VGNC:88250 ENTREZGENE