| Gene: LDLRAD2 (low density lipoprotein receptor class A domain containing 2) Sus scrofa |
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Analyze |
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| Symbol: |
LDLRAD2 |
| Name: |
low density lipoprotein receptor class A domain containing 2 |
| RGD ID: |
14199972 |
| Description: |
ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); congenital disorder of glycosylation Ir (ortholog); connective tissue disease (ortholog) |
| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| Previously known as: |
low-density lipoprotein receptor class A domain-containing protein 2 |
| RGD Orthologs |
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| Alliance Genes |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
Sscrofa11.1 - Pig Sscrofa11.1 Assembly |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 6 | 79,838,616 - 79,849,661 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 6 | 79,837,734 - 79,850,311 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 6 | 73,858,705 - 73,882,022 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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Imported Disease Annotations - ClinVar
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References
Additional References at PubMed
Genomics
Comparative Map Data
LDLRAD2
(Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 6 | 79,838,616 - 79,849,661 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 6 | 79,837,734 - 79,850,311 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 6 | 73,858,705 - 73,882,022 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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LDLRAD2
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 1 | 21,812,265 - 21,825,225 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 21,812,265 - 21,825,225 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 22,138,758 - 22,151,718 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 22,011,345 - 22,024,301 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 1 | 20,461,696 - 20,474,651 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | p36.12 | NCBI | | | | | HuRef | 1 | 20,382,363 - 20,395,183 (+) | NCBI | | HuRef | | | CHM1_1 | 1 | 22,251,224 - 22,264,162 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 21,636,207 - 21,649,033 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Ldlrad2
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 4 | 137,298,185 - 137,309,429 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 4 | 137,298,187 - 137,309,415 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 4 | 137,570,875 - 137,582,118 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 4 | 137,570,876 - 137,582,104 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 4 | 137,126,791 - 137,131,095 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 4 | 136,842,952 - 136,847,256 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 4 | 135,779,142 - 135,783,446 (-) | NCBI | | Celera | | | Cytogenetic Map | 4 | D3 | NCBI | | | | | cM Map | 4 | 69.99 | NCBI | | | | |
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Ldlrad2
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 5 | 155,062,172 - 155,070,752 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 5 | 149,778,795 - 149,788,335 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 5 | 149,779,675 - 149,787,140 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 | 5 | 155,914,517 - 155,922,269 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 5 | 155,914,735 - 155,916,893 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 5 | 159,670,756 - 159,678,190 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 5 | 156,329,921 - 156,337,770 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 5 | 148,175,457 - 148,183,236 (-) | NCBI | | Celera | | | Cytogenetic Map | 5 | q36 | NCBI | | | | |
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Ldlrad2
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 | NW_004955452 | 2,031,868 - 2,057,264 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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LDLRAD2
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 1 | 205,118,316 - 205,127,447 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 204,229,909 - 204,239,307 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 21,005,437 - 21,014,421 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 21,969,991 - 21,980,475 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 21,969,991 - 21,980,470 (+) | Ensembl | panpan1.1 | | panPan2 | |
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LDLRAD2
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 2 | 77,368,930 - 77,377,385 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 2 | 77,368,634 - 77,377,126 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 2 | 73,871,756 - 73,880,307 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 2 | 77,926,626 - 77,935,177 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 2 | 77,926,330 - 77,934,808 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 2 | 74,746,315 - 74,754,861 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 2 | 75,756,303 - 75,764,847 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 2 | 76,759,820 - 76,768,390 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Ldlrad2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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LDLRAD2
(Chlorocebus sabaeus - green monkey) |
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Ldlrad2
(Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
| RefSeq Acc Id: |
ENSSSCT00000077310 ⟹ ENSSSCP00000061769 |
| Type: |
CODING |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source |
|---|
Sscrofa11.1 Ensembl | 6 | 79,838,616 - 79,849,661 (+) | Ensembl |
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| RefSeq Acc Id: |
XM_021095497 ⟹ XP_020951156 |
| Type: |
CODING |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source |
|---|
Sscrofa11.1 | 6 | 79,837,734 - 79,850,311 (+) | NCBI |
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| Sequence: |
CAAGATTATGTCCTGCTGAGCCACAACGGGAACTCCTAAACTGCCACACATTTACTCATTTCCT
GGATGCCTGCTCTGCGCCAGGCACTCCGCTGTGACCTAGGGCTTCAGGGAGCAACAAGACACTC
ACAGAAGACAATTTTAGTGAGGACTATTGGACAATACATACAATTAGATCTAAATAAGCAAAAT
AATTGCAGTGAATGGTGAGAAAAATTCAGGGAGGTATGACAGAGTGACAAGGAGGGAGAGCGCT
AATTCAGGGTGGGACGTGGTCAGGGAAATGTGGTCTGAGGAGGGACACGTGAGCTTGAAATCTG
AACGCCCTGGGGAAGCCAGCCATGCAACGCCACAAGGGAAGAAGATTCCAGGCGGAGGAAATGC
CAGGGCAAAGGCCCTGAGGCAGGAAAGCTTTATACCAGAGCTGACTCCTGGTCCAGTGCTCCTT
TACCATGTGCTGCCTCCCTGGGTGCTCAGAGAGGCCCCTTTGGTGTCCTGGGCCTCCCTTCAAC
TCAGCCCTAAGATGCCAACTTCTCTCTGAGGCTGTGGGTCCCTGTGGCTGAACCGGATCTGAGT
TTCCTGGTTCCTGTCTGGCAGAGGATGAGCAGACATCCTCCCGCCTTCTCTCCCCAGGCTCTAG
CCCCAGCCCCAAATCTCCATGGCAACCCTAGACACAATCCTGACCTGAAGGAGGATCTGGGAGG
GGGAGCACAAACATCACTGGAGAGACCAGAGCGGCAGGTGCACTTGCCTCTCCCTGCTCCGTGT
GTCCTGATAACCTCTCCGGTGACCCAGCCAGGACCCCTACACCCCAGTCTCCCCAAAGAACCCA
CACCGAAGATTCCGCAGGTCTGCCCCACTGCCAGGCACACAGGGGCCTGGATGGAAGCCTGTCC
TCTGCACCTGCCCCAAAGGCTGCTCCTGCTAGGGGTGGCTGCCCTGGCTGCACCTGTTCCACAC
ACAGGCGACCTGGTGGACCTGTGCGGCCAGACGTGGCAGGGGGCCGGGCTGCTGCTGCGCTCGC
ACCCCACATCCCGCCGCTTCTACTTCGTGGCTCCGCACACCGACTGCCGACTCTGGTTGCGGGC
GGCGGCCCCAGGGGACAGGATCCGCTTCCAGTTCCGCTTCTTTCTGGTCTACAGCCTGACCCCG
GCGTCCCCGCCGCCCCCAGCACCCAATGCCTCCTCCCCAGCCGACCCCTGCGCCCCTGGGTCCT
ACCTGCAGTTCTACGAGGGCCCGCCAGGGGCGCCCCGACCGCTTGGGGCCCCGCTCTGCGGCCT
GACCATCCCTGCTCCGGTGGTGTCTTCTGGAGACTTCCTGGCCCTGCGCCTGGTCACCAGAGGC
CGCCAGCCGCGCGTGGACTTCGTGGGAGAAGTCACCTCTTTCCGGTTGGGATCCTGTGGCGCCT
ACTTCCCATGTCGGAATGGCAGGTGCATCCCGCCGAGTCTGGTGTGCGATCACTGGGACATGGA
CAACTGTGGTGACGGCAGTGACCAGGCTTCCTGGCCCCCAGCCAACTGCAGAGGTCCCTCTCTG
GCGCCCAGCAAGGCAGCGGGTACGGATGCTGGTACCTCCCAGCCCTTGACCCTTTCCCTGGCTC
TTGGGTCTTTGGGGACCCTGGGGACTGCAGCTGAGAGGAGTCCCCCTGCAGGCTGGGACCATGA
ACGACAGGATGCAGCTCTGGAAGGTAGATGGCTTTTGGTTACCACCTGCTCTGGCGCCTCCCAC
CAAGGTCACAACTGTCCCTCTTCAGTGATGGGTGGGGGTGGCAGGCCTAGGCTCAGGCCTGAGT
GGACTCTTGTTCCTTCTGCAGGTCCCCGGCTGCGGGGCGTGGCCCTGGCCTCCTCACTGCTCCT
GGCCTCTGCTGGCCTCCTGCTGGGTCTCCTCTGGTGCTGCTGCTCCTCCAGCGGGCTGGCCTGG
AGGGCGGGTGCCCGTGGCCTCTGCCTCAGCTGCACCATCTGTTATACGTGTCCTGGCCAGGTGG
CCCCTGGGGGGGCCGTGACTGAGTGAGCCAGCCTTCCAAGGTCGAGGGGGTCAGCTCCAGAGAG
GCTGCGGGCCTCGGAGGAAGGAGGGTGGGCTCTGCGGTCAGACAGTCCCTGGGTTCTGCTCCCA
CCTCCCACAGGGCTGTCGAATCTGGGCAGGTCATATAATCCTCTGGGACTCAGTCTACTCCTCT
GGAATGTGGGATGATTTCCATCTCGCAGGGTCGTGGGGAAGGCCACAGAAGAGAGCTGACCCTG
CAACTCGCATGGCGGCTGGCACAGCGGGGAGCTGACTTTGCTCACCTGAAGCTGCCTTGCTTTG
CTCCCAGACCTCACCTGCCCTGCTCTGCCCACCCCATCCCGCCCTCAGGTACCAGGCATCCAGC
CCTCATCAGAGACACAGGAGATGGTCTTGGCAGGGATAGCACCGTTTATTAAGAAAGATCAAGA
CAAAAACCACAGGAGGGTCCCTTCTAGGACACAGAGGCCAGGCGCCCCGACCCCACATCTGGGG
GCTGCTGGTGGGGAGGCTTCTTGCCCCCATTTGAGCCCTCAGGCTCCCACAGATGGGGCAGGGC
TGTCATGTCCCCTTCCTGTCCCTCCCAGGCATGAGTCCTGGTTCTCCCCACCCAAGGCACTAAC
TCTTTCCAACCACCAATGCCCTTCTCCCCCATGTCCCCTGGGCCTTCACTTCCAGATCAGTGGG
GGGGACGTGGCCTGGTACGGGCAGGGAGACCCTCTCAGTGCTGGGCTCTGCCTGTAGCAGCTCC
TGGTAAGAGCTGGGGTGGAGTTTCCCTTGCAGCCCCTGAGGGCAGGGGCCCTGGACTAGGTGTC
GGGTTGAGGGGATGCAGGCCAGGAAGGCTTGGTGGGATGGGGAGGCTGCCAGGGGCAGGTGGCC
CAGCTGGCTAGGTAGAAGTGGAGGTGGGGGTGGGACATGGGCTGGCAGGGTGGGGGCTGCCTGC
CCAGGGGTGAGCTGCCTTTTGCTCCAGAGTTGGCACTAAAGAGCTTTCCCAACACAGAGGAGGC
TGGCAAA
hide sequence
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| RefSeq Acc Id: |
XP_020951156 ⟸ XM_021095497 |
| - Sequence: |
MSRHPPAFSPQALAPAPNLHGNPRHNPDLKEDLGGGAQTSLERPERQVHLPLPAPCVLITSPVT
QPGPLHPSLPKEPTPKIPQVCPTARHTGAWMEACPLHLPQRLLLLGVAALAAPVPHTGDLVDLC
GQTWQGAGLLLRSHPTSRRFYFVAPHTDCRLWLRAAAPGDRIRFQFRFFLVYSLTPASPPPPAP
NASSPADPCAPGSYLQFYEGPPGAPRPLGAPLCGLTIPAPVVSSGDFLALRLVTRGRQPRVDFV
GEVTSFRLGSCGAYFPCRNGRCIPPSLVCDHWDMDNCGDGSDQASWPPANCRGPSLAPSKAAGT
DAGTSQPLTLSLALGSLGTLGTAAERSPPAGWDHERQDAALEGRWLLVTTCSGASHQGHNCPSS
VMGGGGRPRLRPEWTLVPSAGPRLRGVALASSLLLASAGLLLGLLWCCCSSSGLAWRAGARGLC
LSCTICYTCPGQVAPGGAVTE
hide sequence
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| RefSeq Acc Id: |
ENSSSCP00000061769 ⟸ ENSSSCT00000077310 |
Additional Information
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