DMD (dystrophin) - Rat Genome Database
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Gene: DMD (dystrophin) Sus scrofa
Analyze
Symbol: DMD
Name: dystrophin
RGD ID: 14199421
Description: ENCODES a protein that exhibits dystroglycan binding (ortholog); integrin binding (ortholog); lamin binding (ortholog); INVOLVED IN aging (ortholog); cardiac muscle contraction (ortholog); cell differentiation (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); autistic disorder (ortholog); FOUND IN astrocyte projection (ortholog); axon (ortholog); cell junction (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Orthologs:
Homo sapiens (human) : DMD (dystrophin)  HGNC  Alliance
Mus musculus (house mouse) : Dmd (dystrophin, muscular dystrophy)  MGI  Alliance
Rattus norvegicus (Norway rat) : Dmd (dystrophin)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Dmd (dystrophin)
Pan paniscus (bonobo/pygmy chimpanzee) : DMD (dystrophin)
Canis lupus familiaris (dog) : DMD (dystrophin)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Dmd (dystrophin)
Chlorocebus sabaeus (African green monkey) : DMD (dystrophin)
Heterocephalus glaber (naked mole-rat) : Dmd (dystrophin)
more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX27,028,223 - 29,181,689 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X27,028,223 - 29,650,728 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X29,663,010 - 29,797,624 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X29,402,260 - 29,549,360 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X30,958,632 - 31,033,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X30,368,459 - 30,440,314 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X31,219,126 - 31,875,451 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Animal Disease Models  (ISO)
arrhythmogenic right ventricular cardiomyopathy  (ISO)
autistic disorder  (ISO)
Becker muscular dystrophy  (ISO)
Benign Pseudohypertrophic Muscular Dystrophy  (ISO)
brain edema  (ISO)
calcinosis  (ISO)
Cardiac Fibrosis  (ISO)
Cardiomegaly  (ISO)
cardiomyopathy  (ISO)
cataract  (ISO)
clubfoot  (ISO)
cognitive disorder  (ISO)
congestive heart failure  (ISO)
Dehydration  (ISO)
dilated cardiomyopathy  (ISO)
dilated cardiomyopathy 1A  (ISO)
Dilated Cardiomyopathy with Left Ventricular Noncompaction  (ISO)
Duchenne muscular dystrophy  (ISO)
Duchenne Muscular Dystrophy, Mental Retardation, and Absence of ERG B-wave  (ISO)
dystonia  (ISO)
embryonal rhabdomyosarcoma  (ISO)
essential tremor 1  (ISO)
Exertional Myalgia, Muscle Stiffness and Myoglobinuria  (ISO)
Experimental Seizures  (ISO)
familial hypertrophic cardiomyopathy  (ISO)
Funnel Chest  (ISO)
gastrointestinal stromal tumor  (ISO)
genetic disease  (ISO)
Heart Block  (ISO)
hypertrophic cardiomyopathy  (ISO)
Hypesthesia  (ISO)
intellectual disability  (ISO)
isolated elevated serum creatine phosphokinase levels  (ISO)
Kyphosis  (ISO)
leiomyosarcoma  (ISO)
long QT syndrome  (ISO)
Malformations of Cortical Development, Group II  (ISO)
Mobility Limitation  (ISO)
Muscle Cramp  (ISO)
Muscle Hypotonia  (ISO)
Muscle Weakness  (ISO)
muscular atrophy  (ISO)
muscular dystrophy  (ISO)
Muscular Dystrophy, Animal  (ISO)
myocarditis  (ISO)
myopathy  (ISO)
Necrosis  (ISO)
Neoplasm Invasiveness  (ISO)
Neoplasm Metastasis  (ISO)
Neurodevelopmental Disorders  (ISO)
ornithine carbamoyltransferase deficiency  (ISO)
polycystic ovary syndrome  (ISO)
prostate cancer  (ISO)
restrictive cardiomyopathy  (ISO)
retinal degeneration  (ISO)
schizophrenia  (ISO)
status epilepticus  (ISO)
syndromic X-linked intellectual disability Lubs type  (ISO)
Ventricular Dysfunction  (ISO)
X-linked adrenal hypoplasia congenita  (ISO)
X-linked dilated cardiomyopathy  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
aging  (ISO)
cardiac muscle cell action potential  (IEA)
cardiac muscle contraction  (ISO)
cell differentiation  (ISO)
cellular protein localization  (IEA)
cellular protein-containing complex assembly  (IEA)
cerebral cortex development  (ISO)
establishment of blood-nerve barrier  (IEA)
establishment of glial blood-brain barrier  (IEA)
muscle cell cellular homeostasis  (IEA)
muscle cell differentiation  (ISO)
muscle fiber development  (IEA)
muscle organ development  (ISO)
myotube cell development  (IEA)
negative regulation of ERK1 and ERK2 cascade  (IEA)
negative regulation of neuron differentiation  (ISO)
negative regulation of peptidyl-cysteine S-nitrosylation  (IEA)
negative regulation of peptidyl-serine phosphorylation  (IEA)
neuron differentiation  (ISO)
neuron projection morphogenesis  (ISO)
neurotransmitter receptor metabolic process  (IEA)
nucleus localization  (IEA)
olfactory nerve structural organization  (IEA)
peptide biosynthetic process  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of cell-matrix adhesion  (IEA)
positive regulation of neuron differentiation  (ISO)
positive regulation of neuron projection development  (ISO)
positive regulation of sodium ion transmembrane transporter activity  (IEA)
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  (IEA)
regulation of cell cycle  (ISO)
regulation of cellular response to growth factor stimulus  (ISO)
regulation of gene expression  (ISO)
regulation of heart rate  (IEA)
regulation of membrane potential  (ISO)
regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum  (ISO)
regulation of ryanodine-sensitive calcium-release channel activity  (IEA)
regulation of skeletal muscle contraction  (ISO)
regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion  (IEA)
regulation of transcription, DNA-templated  (IEA)
regulation of voltage-gated calcium channel activity  (IEA)
response to denervation involved in regulation of muscle adaptation  (ISO)
response to muscle stretch  (IEA)
response to water deprivation  (ISO)
skeletal muscle tissue development  (IEA)
skeletal muscle tissue regeneration  (ISO)
synaptic signaling  (IBA)

References
Additional References at PubMed
PMID:14681463   PMID:15941659   PMID:17145712   PMID:24347611  


Genomics

Comparative Map Data
DMD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX27,028,223 - 29,181,689 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X27,028,223 - 29,650,728 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X29,663,010 - 29,797,624 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X29,402,260 - 29,549,360 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X30,958,632 - 31,033,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X30,368,459 - 30,440,314 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X31,219,126 - 31,875,451 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DMD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX31,097,677 - 33,339,441 (-)EnsemblGRCh38hg38GRCh38
GRCh38X31,119,219 - 33,339,460 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X31,137,345 - 33,357,726 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X31,047,266 - 33,267,647 (-)NCBINCBI36hg18NCBI36
Build 34X30,955,968 - 31,044,681NCBI
CeleraX35,264,860 - 37,484,992 (-)NCBI
Cytogenetic MapXp21.2-p21.1NCBI
HuRefX28,877,768 - 31,095,562 (-)NCBIHuRef
CHM1_1X31,168,731 - 33,388,091 (-)NCBICHM1_1
Dmd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X81,858,244 - 84,248,656 (+)NCBI
GRCm38X82,814,664 - 85,205,050 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX82,948,870 - 85,206,141 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X80,194,209 - 82,450,389 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X79,201,622 - 81,457,760 (+)NCBImm8
CeleraX74,178,103 - 76,399,942 (+)NCBICelera
Cytogenetic MapXC1NCBI
cM MapX38.38NCBI
Dmd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X51,149,358 - 53,519,271 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX51,286,737 - 53,519,259 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X51,475,950 - 53,700,033 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X71,501,362 - 71,671,414 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X71,574,653 - 71,744,706 (+)NCBI
CeleraX49,967,398 - 50,127,432 (+)NCBICelera
Cytogenetic MapXq21NCBI
Dmd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555351,283,523 - 3,299,542 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555351,283,084 - 3,297,015 (+)NCBIChiLan1.0ChiLan1.0
DMD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X31,279,878 - 32,974,614 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX31,282,415 - 33,492,733 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X23,728,650 - 26,338,849 (-)NCBIMhudiblu_PPA_v0panPan3
DMD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX26,290,910 - 28,333,576 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X26,290,903 - 28,444,635 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dmd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365537,157,526 - 7,943,703 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DMD
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X29,543,003 - 32,218,011 (-)NCBI
Dmd
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476222,306,962 - 24,846,427 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 1 2 2 12 1 2
Low 8 2 2 2 11 1 1
Below cutoff 1 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ865385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK347264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU914583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01064819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000013350   ⟹   ENSSSCP00000012992
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX27,028,223 - 27,422,976 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000026041   ⟹   ENSSSCP00000023001
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX27,028,231 - 29,099,042 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000029079   ⟹   ENSSSCP00000026005
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX27,028,223 - 27,182,944 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000048708   ⟹   ENSSSCP00000034605
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX27,028,223 - 27,917,094 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000071618   ⟹   ENSSSCP00000072889
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX27,028,223 - 27,917,100 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000087025   ⟹   ENSSSCP00000066851
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX27,028,233 - 27,917,100 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000089893   ⟹   ENSSSCP00000068371
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX27,028,231 - 29,181,689 (-)Ensembl
RefSeq Acc Id: NM_001012408   ⟹   NP_001012408
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,030,477 - 29,099,042 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079543   ⟹   XP_020935202
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,223 - 29,650,727 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079544   ⟹   XP_020935203
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,650,728 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079545   ⟹   XP_020935204
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,181,931 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079546   ⟹   XP_020935205
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,650,726 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079547   ⟹   XP_020935206
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,101,766 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079548   ⟹   XP_020935207
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,303,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079549   ⟹   XP_020935208
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,650,727 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079550   ⟹   XP_020935209
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,650,728 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079551   ⟹   XP_020935210
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,650,728 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079553   ⟹   XP_020935212
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,181,931 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079554   ⟹   XP_020935213
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,650,727 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079555   ⟹   XP_020935214
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,303,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079556   ⟹   XP_020935215
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,303,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079557   ⟹   XP_020935216
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 28,525,999 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079558   ⟹   XP_020935217
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 28,525,706 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079559   ⟹   XP_020935218
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 28,121,488 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079560   ⟹   XP_020935219
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 27,422,971 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079561   ⟹   XP_020935220
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 27,182,969 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079562   ⟹   XP_020935221
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 27,182,933 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079564   ⟹   XP_020935223
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 27,182,933 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079565   ⟹   XP_020935224
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 27,182,933 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_020935202   ⟸   XM_021079543
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020935210   ⟸   XM_021079551
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_020935209   ⟸   XM_021079550
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_020935203   ⟸   XM_021079544
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020935213   ⟸   XM_021079554
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_020935208   ⟸   XM_021079549
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020935205   ⟸   XM_021079546
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020935214   ⟸   XM_021079555
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_020935215   ⟸   XM_021079556
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_020935207   ⟸   XM_021079548
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_020935212   ⟸   XM_021079553
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_020935204   ⟸   XM_021079545
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020935206   ⟸   XM_021079547
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_020935216   ⟸   XM_021079557
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_020935217   ⟸   XM_021079558
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_020935218   ⟸   XM_021079559
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_020935219   ⟸   XM_021079560
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_020935220   ⟸   XM_021079561
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_020935221   ⟸   XM_021079562
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_020935224   ⟸   XM_021079565
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_020935223   ⟸   XM_021079564
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: NP_001012408   ⟸   NM_001012408
- UniProtKB: Q5GN48 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSSSCP00000034605   ⟸   ENSSSCT00000048708
RefSeq Acc Id: ENSSSCP00000026005   ⟸   ENSSSCT00000029079
RefSeq Acc Id: ENSSSCP00000023001   ⟸   ENSSSCT00000026041
RefSeq Acc Id: ENSSSCP00000068371   ⟸   ENSSSCT00000089893
RefSeq Acc Id: ENSSSCP00000012992   ⟸   ENSSSCT00000013350
RefSeq Acc Id: ENSSSCP00000072889   ⟸   ENSSSCT00000071618
RefSeq Acc Id: ENSSSCP00000066851   ⟸   ENSSSCT00000087025
Protein Domains
Calponin-homology (CH)   WW   ZZ-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028148 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000012992 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000023001 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000026005 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000034605 UniProtKB/TrEMBL
  ENSSSCP00000066851 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000068371 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000072889 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000013350 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000026041 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000029079 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000048708 UniProtKB/TrEMBL
  ENSSSCT00000071618 UniProtKB/TrEMBL
  ENSSSCT00000087025 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000089893 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.60.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Actinin_actin-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dystrophin/utrophin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand_dom_typ1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand_dom_typ2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin/alpha-actinin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_ZZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_ZZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:497636 UniProtKB/Swiss-Prot
NCBI Gene DMD ENTREZGENE
Pfam EF-hand_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00307 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00397 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00569 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PIRSF Dystrophin/utrophin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ACTININ_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACTININ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_ZZ_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_ZZ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00033 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00456 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPEC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_ZZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51045 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Ssc.42754 ENTREZGENE
  Ssc.93582 ENTREZGENE
UniProt A0A286ZSQ2_PIG UniProtKB/TrEMBL
  A0A5G2QTV4_PIG UniProtKB/TrEMBL
  A0A5G2QY27_PIG UniProtKB/TrEMBL
  A0A5G2R988_PIG UniProtKB/TrEMBL
  DMD_PIG UniProtKB/Swiss-Prot
  F1SPU7_PIG UniProtKB/TrEMBL
  I3LG08_PIG UniProtKB/TrEMBL
  I3LPH8_PIG UniProtKB/TrEMBL
  Q5GN48 ENTREZGENE