DMD (dystrophin) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: DMD (dystrophin) Sus scrofa
Analyze
Symbol: DMD
Name: dystrophin
RGD ID: 14199421
Description: ENCODES a protein that exhibits actin binding (ortholog); dystroglycan binding (ortholog); integrin binding (ortholog); INVOLVED IN apoptotic process (ortholog); bone development (ortholog); cardiac muscle cell action potential (ortholog); ASSOCIATED WITH Duchenne muscular dystrophy; Animal Disease Models (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); FOUND IN astrocyte projection (ortholog); axon (ortholog); cell junction (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX27,028,231 - 28,383,840 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X27,028,223 - 29,650,728 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X29,663,010 - 29,797,624 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X29,402,260 - 29,549,360 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X30,958,632 - 31,033,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X30,368,459 - 30,440,314 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X31,219,126 - 31,875,451 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Animal Disease Models  (ISO)
arrhythmogenic right ventricular cardiomyopathy  (ISO)
Ataxia  (ISO)
atrial heart septal defect  (ISO)
autistic disorder  (ISO)
Becker muscular dystrophy  (ISO)
brain edema  (ISO)
Brugada syndrome  (ISO)
calcinosis  (ISO)
Cardiac Conduction Defect  (ISO)
Cardiac Fibrosis  (ISO)
Cardiomegaly  (ISO)
cardiomyopathy  (ISO)
cataract  (ISO)
cognitive disorder  (ISO)
color blindness  (ISO)
colorectal cancer  (ISO)
congestive heart failure  (ISO)
Dehydration  (ISO)
dilated cardiomyopathy  (ISO)
dilated cardiomyopathy 1A  (ISO)
dilated cardiomyopathy 1B  (ISO)
dilated cardiomyopathy 1H  (ISO)
dilated cardiomyopathy 3B  (ISO)
Dilated Cardiomyopathy with Left Ventricular Noncompaction  (ISO)
Duchenne muscular dystrophy  (IAGP,ISO)
embryonal rhabdomyosarcoma  (ISO)
Exertional Myalgia, Muscle Stiffness and Myoglobinuria  (ISO)
Experimental Seizures  (ISO)
familial hypertrophic cardiomyopathy  (ISO)
Fanconi anemia complementation group A  (ISO)
Funnel Chest  (ISO)
gastrointestinal stromal tumor  (ISO)
genetic disease  (ISO)
Heart Block  (ISO)
hypertrophic cardiomyopathy  (ISO)
hypertrophic cardiomyopathy 1  (ISO)
intellectual disability  (ISO)
isolated elevated serum creatine phosphokinase levels  (ISO)
leiomyosarcoma  (ISO)
long QT syndrome  (ISO)
Muscle Cramp  (ISO)
Muscle Weakness  (ISO)
muscular atrophy  (ISO)
muscular dystrophy  (ISO)
Muscular Dystrophy, Animal  (ISO)
myocarditis  (ISO)
myopathy  (ISO)
Necrosis  (ISO)
Neoplasm Invasiveness  (ISO)
Neoplasm Metastasis  (ISO)
Neurodevelopmental Disorders  (ISO)
orbital disease  (ISO)
ornithine carbamoyltransferase deficiency  (ISO)
polycystic ovary syndrome  (ISO)
ptosis  (ISO)
restrictive cardiomyopathy  (ISO)
retinal degeneration  (ISO)
schizophrenia  (ISO)
Spasm  (ISO)
status epilepticus  (ISO)
Sudden Unexpected Nocturnal Death Syndrome  (ISO)
syndromic X-linked intellectual disability Lubs type  (ISO)
Ventricular Dysfunction  (ISO)
X-linked adrenal hypoplasia congenita  (ISO)
X-linked dilated cardiomyopathy  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
apoptotic process  (ISO)
bone development  (ISO)
cardiac muscle cell action potential  (ISO)
cardiac muscle contraction  (ISO)
cell differentiation  (ISO)
cerebral cortex development  (ISO)
connective tissue development  (ISO)
determination of adult lifespan  (ISO)
establishment of blood-nerve barrier  (ISO)
establishment of glial blood-brain barrier  (ISO)
gene expression  (ISO)
inflammatory response  (ISO)
limb development  (ISO)
multicellular organism growth  (ISO)
multicellular organism reproduction  (ISO)
muscle cell cellular homeostasis  (ISO)
muscle cell development  (IBA,IEA,ISO)
muscle cell differentiation  (ISO)
muscle organ development  (ISO)
myotube cell development  (ISO)
negative regulation of ERK1 and ERK2 cascade  (ISO)
negative regulation of neuron differentiation  (ISO)
negative regulation of peptidyl-cysteine S-nitrosylation  (ISO)
negative regulation of peptidyl-serine phosphorylation  (ISO)
neuron development  (IBA,IEA)
neuron differentiation  (ISO)
neuron projection morphogenesis  (ISO)
nucleus localization  (ISO)
olfactory nerve structural organization  (ISO)
peptide biosynthetic process  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of cell-matrix adhesion  (ISO)
positive regulation of neuron differentiation  (ISO)
positive regulation of neuron projection development  (ISO)
protein localization  (ISO)
protein-containing complex assembly  (ISO)
reactive oxygen species biosynthetic process  (ISO)
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  (ISO)
regulation of cellular response to growth factor stimulus  (ISO)
regulation of DNA-templated transcription  (ISO)
regulation of gene expression  (ISO)
regulation of heart rate  (ISO)
regulation of membrane potential  (ISO)
regulation of muscle system process  (IBA,IEA)
regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum  (ISO)
regulation of skeletal muscle contraction  (ISO)
regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion  (ISO)
response to denervation involved in regulation of muscle adaptation  (ISO)
response to muscle stretch  (ISO)
response to xenobiotic stimulus  (ISO)
skeletal muscle tissue development  (IBA,IEA,ISO)
skeletal muscle tissue regeneration  (ISO)
striated muscle cell development  (ISO)
striated muscle contraction  (ISO)
synaptic signaling  (IBA,IEA)
synaptic transmission, cholinergic  (ISO)
walking behavior  (ISO)

References
Additional References at PubMed
PMID:14681463   PMID:15941659   PMID:17145712   PMID:22301074   PMID:24347611   PMID:30032202   PMID:34884867  


Genomics

Comparative Map Data
DMD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX27,028,231 - 28,383,840 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X27,028,223 - 29,650,728 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X29,663,010 - 29,797,624 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X29,402,260 - 29,549,360 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X30,958,632 - 31,033,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X30,368,459 - 30,440,314 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X31,219,126 - 31,875,451 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DMD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X31,119,222 - 33,339,388 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX31,097,677 - 33,339,609 (-)EnsemblGRCh38hg38GRCh38
GRCh37X31,137,339 - 33,357,505 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X31,047,266 - 33,267,647 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X30,955,968 - 31,044,681NCBI
CeleraX35,264,860 - 37,484,992 (-)NCBICelera
Cytogenetic MapXp21.2-p21.1NCBI
HuRefX28,877,768 - 31,095,562 (-)NCBIHuRef
CHM1_1X31,168,731 - 33,388,091 (-)NCBICHM1_1
T2T-CHM13v2.0X30,717,372 - 32,937,500 (-)NCBIT2T-CHM13v2.0
Dmd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X81,858,244 - 84,248,656 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX81,992,476 - 84,249,747 (+)EnsemblGRCm39 Ensembl
GRCm38X82,814,664 - 85,205,050 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX82,948,870 - 85,206,141 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X80,194,209 - 82,450,389 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X79,201,622 - 81,457,760 (+)NCBIMGSCv36mm8
CeleraX74,178,103 - 76,399,942 (+)NCBICelera
Cytogenetic MapXC1NCBI
cM MapX38.38NCBI
Dmd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X51,070,098 - 53,437,845 (+)NCBIGRCr8
mRatBN7.2X47,272,324 - 49,504,219 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX47,272,331 - 49,504,207 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX48,634,357 - 50,843,096 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X52,101,232 - 54,314,949 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X49,765,630 - 51,974,308 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X51,149,358 - 53,519,271 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX51,286,737 - 53,519,259 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X51,475,950 - 53,700,033 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X71,501,362 - 71,671,414 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X71,574,653 - 71,744,706 (+)NCBI
CeleraX49,967,398 - 50,127,432 (+)NCBICelera
Cytogenetic MapXq21NCBI
Dmd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555351,283,523 - 3,299,542 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555351,283,084 - 3,297,015 (+)NCBIChiLan1.0ChiLan1.0
DMD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X32,929,927 - 35,148,561 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X32,933,306 - 35,024,079 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X23,728,650 - 26,338,849 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X31,279,878 - 32,974,614 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX31,282,415 - 33,492,733 (-)Ensemblpanpan1.1panPan2
DMD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X26,290,903 - 28,444,635 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX26,290,910 - 28,333,576 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX31,264,482 - 33,330,008 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X26,319,830 - 28,487,633 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX26,319,823 - 28,377,504 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X26,365,124 - 28,433,100 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X26,358,103 - 28,426,635 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X26,455,978 - 28,540,050 (-)NCBIUU_Cfam_GSD_1.0
Dmd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X19,065,166 - 21,072,605 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365537,157,526 - 7,943,703 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DMD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X29,543,003 - 32,218,011 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605631,608,900 - 34,272,207 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dmd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476222,746,729 - 24,847,938 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476222,306,962 - 24,846,427 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DMD
17918 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 1 2 2 12 1 2
Low 8 2 2 2 11 1 1
Below cutoff 1 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021079565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ865385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK347264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU914583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01064819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSSCT00000013350   ⟹   ENSSSCP00000012992
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX27,028,232 - 27,422,976 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000026041   ⟹   ENSSSCP00000023001
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX27,028,231 - 28,383,840 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000029079   ⟹   ENSSSCP00000026005
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX27,028,232 - 27,422,976 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000048708   ⟹   ENSSSCP00000034605
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX27,028,233 - 27,724,196 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000071618   ⟹   ENSSSCP00000072889
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX27,028,231 - 27,724,196 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000087025   ⟹   ENSSSCP00000066851
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX27,028,233 - 27,724,196 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000089893   ⟹   ENSSSCP00000068371
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX27,028,231 - 27,724,196 (-)Ensembl
RefSeq Acc Id: NM_001012408   ⟹   NP_001012408
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,030,477 - 29,099,042 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079543   ⟹   XP_020935202
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,223 - 29,650,727 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079544   ⟹   XP_020935203
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,650,728 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079545   ⟹   XP_020935204
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,181,931 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079546   ⟹   XP_020935205
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,650,726 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079547   ⟹   XP_020935206
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,101,766 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079548   ⟹   XP_020935207
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,303,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079549   ⟹   XP_020935208
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,650,727 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079550   ⟹   XP_020935209
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,650,728 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079551   ⟹   XP_020935210
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,650,728 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079553   ⟹   XP_020935212
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,181,931 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079554   ⟹   XP_020935213
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,650,727 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079555   ⟹   XP_020935214
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,303,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079556   ⟹   XP_020935215
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 29,303,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079557   ⟹   XP_020935216
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 28,525,999 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079558   ⟹   XP_020935217
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 28,525,706 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079559   ⟹   XP_020935218
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 28,121,488 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079560   ⟹   XP_020935219
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 27,422,971 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079561   ⟹   XP_020935220
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 27,182,969 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079562   ⟹   XP_020935221
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 27,182,933 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079564   ⟹   XP_020935223
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 27,182,933 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021079565   ⟹   XP_020935224
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X27,028,528 - 27,182,933 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001012408 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935202 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935203 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935204 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935205 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935206 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935207 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935208 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935209 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935210 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935212 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935213 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935214 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935215 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935216 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935217 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935218 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935219 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935220 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935221 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935223 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935224 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAI26302 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000012992
  ENSSSCP00000012992.6
  ENSSSCP00000023001.5
  ENSSSCP00000026005.4
  ENSSSCP00000034605.1
  ENSSSCP00000066851
  ENSSSCP00000066851.1
  ENSSSCP00000068371.2
  ENSSSCP00000072889.2
  ENSSSCP00015029681.1
  ENSSSCP00015029731.1
  ENSSSCP00015029767.1
  ENSSSCP00015029827.1
  ENSSSCP00025025989.1
  ENSSSCP00025026080.1
  ENSSSCP00025026154.1
  ENSSSCP00025026227.1
  ENSSSCP00025026337.1
  ENSSSCP00030003811.1
  ENSSSCP00030003816.1
  ENSSSCP00030003820.1
  ENSSSCP00030003831.1
  ENSSSCP00035010532.1
  ENSSSCP00035010533.1
  ENSSSCP00035010535.1
  ENSSSCP00035010538.1
  ENSSSCP00040044977.1
  ENSSSCP00040045094.1
  ENSSSCP00040045141.1
  ENSSSCP00040045179.1
  ENSSSCP00045025442.1
  ENSSSCP00045025596.1
  ENSSSCP00045025691.1
  ENSSSCP00045025790.1
  ENSSSCP00050016433.1
  ENSSSCP00050016453.1
  ENSSSCP00050016457.1
  ENSSSCP00050016465.1
  ENSSSCP00055044544.1
  ENSSSCP00055044610.1
  ENSSSCP00055044696.1
  ENSSSCP00055044771.1
  ENSSSCP00060024207.1
  ENSSSCP00060024209.1
  ENSSSCP00060024210.1
  ENSSSCP00060024211.1
  ENSSSCP00065016604.1
  ENSSSCP00065016622.1
  ENSSSCP00065016626.1
  ENSSSCP00065016628.1
GenBank Protein Q5GN48 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_020935202   ⟸   XM_021079543
- Peptide Label: isoform X1
- UniProtKB: A0A480Z486 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935210   ⟸   XM_021079551
- Peptide Label: isoform X9
- UniProtKB: A0A480Z486 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935209   ⟸   XM_021079550
- Peptide Label: isoform X8
- UniProtKB: A0A480Z486 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935203   ⟸   XM_021079544
- Peptide Label: isoform X2
- UniProtKB: A0A480Z486 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935213   ⟸   XM_021079554
- Peptide Label: isoform X11
- UniProtKB: A0A480Z486 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935208   ⟸   XM_021079549
- Peptide Label: isoform X7
- UniProtKB: A0A480Z486 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935205   ⟸   XM_021079546
- Peptide Label: isoform X4
- UniProtKB: A0A480Z486 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935214   ⟸   XM_021079555
- Peptide Label: isoform X12
- UniProtKB: A0A480Z486 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935215   ⟸   XM_021079556
- Peptide Label: isoform X13
- UniProtKB: A0A480Z486 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935207   ⟸   XM_021079548
- Peptide Label: isoform X6
- UniProtKB: A0A480Z486 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935212   ⟸   XM_021079553
- Peptide Label: isoform X10
- UniProtKB: A0A480Z486 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935204   ⟸   XM_021079545
- Peptide Label: isoform X3
- UniProtKB: A0A480Z486 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935206   ⟸   XM_021079547
- Peptide Label: isoform X5
- UniProtKB: A0A480Z486 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935216   ⟸   XM_021079557
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_020935217   ⟸   XM_021079558
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_020935218   ⟸   XM_021079559
- Peptide Label: isoform X15
- UniProtKB: A0A5G2QY27 (UniProtKB/TrEMBL),   A0A8D1TC61 (UniProtKB/TrEMBL),   A0A8D1M2E2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935219   ⟸   XM_021079560
- Peptide Label: isoform X16
- UniProtKB: A0A8D2BJZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935220   ⟸   XM_021079561
- Peptide Label: isoform X17
- UniProtKB: A0A8D1VFH6 (UniProtKB/TrEMBL),   A0A8D0S4D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935221   ⟸   XM_021079562
- Peptide Label: isoform X18
- UniProtKB: A0A8D1S885 (UniProtKB/TrEMBL),   A0A8D0S4D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935224   ⟸   XM_021079565
- Peptide Label: isoform X20
- UniProtKB: A0A8D0S4D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935223   ⟸   XM_021079564
- Peptide Label: isoform X19
- UniProtKB: A0A8D0VCI5 (UniProtKB/TrEMBL),   A0A8D0S4D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001012408   ⟸   NM_001012408
- UniProtKB: Q5GN48 (UniProtKB/Swiss-Prot),   A0A480Z486 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000034605   ⟸   ENSSSCT00000048708
RefSeq Acc Id: ENSSSCP00000026005   ⟸   ENSSSCT00000029079
RefSeq Acc Id: ENSSSCP00000023001   ⟸   ENSSSCT00000026041
RefSeq Acc Id: ENSSSCP00000068371   ⟸   ENSSSCT00000089893
RefSeq Acc Id: ENSSSCP00000012992   ⟸   ENSSSCT00000013350
RefSeq Acc Id: ENSSSCP00000072889   ⟸   ENSSSCT00000071618
RefSeq Acc Id: ENSSSCP00000066851   ⟸   ENSSSCT00000087025
Protein Domains
Calponin-homology (CH)   WW   ZZ-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028148 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015055493 UniProtKB/TrEMBL
  ENSSSCG00025045054 UniProtKB/TrEMBL
  ENSSSCG00030006620 UniProtKB/TrEMBL
  ENSSSCG00035021110 UniProtKB/TrEMBL
  ENSSSCG00040072675 UniProtKB/TrEMBL
  ENSSSCG00045021364 UniProtKB/TrEMBL
  ENSSSCG00050029501 UniProtKB/TrEMBL
  ENSSSCG00055028158 UniProtKB/TrEMBL
  ENSSSCG00060041734 UniProtKB/TrEMBL
  ENSSSCG00065029090 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000013350 ENTREZGENE
  ENSSSCT00000013350.6 UniProtKB/TrEMBL
  ENSSSCT00000026041.5 UniProtKB/TrEMBL
  ENSSSCT00000029079.4 UniProtKB/TrEMBL
  ENSSSCT00000048708.3 UniProtKB/TrEMBL
  ENSSSCT00000071618.2 UniProtKB/TrEMBL
  ENSSSCT00000087025 ENTREZGENE
  ENSSSCT00000087025.2 UniProtKB/TrEMBL
  ENSSSCT00000089893.2 UniProtKB/TrEMBL
  ENSSSCT00015073947.1 UniProtKB/TrEMBL
  ENSSSCT00015074065.1 UniProtKB/TrEMBL
  ENSSSCT00015074138.1 UniProtKB/TrEMBL
  ENSSSCT00015074321.1 UniProtKB/TrEMBL
  ENSSSCT00025061193.1 UniProtKB/TrEMBL
  ENSSSCT00025061419.1 UniProtKB/TrEMBL
  ENSSSCT00025061580.1 UniProtKB/TrEMBL
  ENSSSCT00025061756.1 UniProtKB/TrEMBL
  ENSSSCT00025062025.1 UniProtKB/TrEMBL
  ENSSSCT00030008879.1 UniProtKB/TrEMBL
  ENSSSCT00030008887.1 UniProtKB/TrEMBL
  ENSSSCT00030008897.1 UniProtKB/TrEMBL
  ENSSSCT00030008912.1 UniProtKB/TrEMBL
  ENSSSCT00035027504.1 UniProtKB/TrEMBL
  ENSSSCT00035027507.1 UniProtKB/TrEMBL
  ENSSSCT00035027512.1 UniProtKB/TrEMBL
  ENSSSCT00035027517.1 UniProtKB/TrEMBL
  ENSSSCT00040100153.1 UniProtKB/TrEMBL
  ENSSSCT00040100373.1 UniProtKB/TrEMBL
  ENSSSCT00040100452.1 UniProtKB/TrEMBL
  ENSSSCT00040100513.1 UniProtKB/TrEMBL
  ENSSSCT00045036540.1 UniProtKB/TrEMBL
  ENSSSCT00045036799.1 UniProtKB/TrEMBL
  ENSSSCT00045036935.1 UniProtKB/TrEMBL
  ENSSSCT00045037064.1 UniProtKB/TrEMBL
  ENSSSCT00050039678.1 UniProtKB/TrEMBL
  ENSSSCT00050039726.1 UniProtKB/TrEMBL
  ENSSSCT00050039733.1 UniProtKB/TrEMBL
  ENSSSCT00050039747.1 UniProtKB/TrEMBL
  ENSSSCT00055055800.1 UniProtKB/TrEMBL
  ENSSSCT00055055874.1 UniProtKB/TrEMBL
  ENSSSCT00055055971.1 UniProtKB/TrEMBL
  ENSSSCT00055056058.1 UniProtKB/TrEMBL
  ENSSSCT00060056592.1 UniProtKB/TrEMBL
  ENSSSCT00060056600.1 UniProtKB/TrEMBL
  ENSSSCT00060056602.1 UniProtKB/TrEMBL
  ENSSSCT00060056605.1 UniProtKB/TrEMBL
  ENSSSCT00065039253.1 UniProtKB/TrEMBL
  ENSSSCT00065039280.1 UniProtKB/TrEMBL
  ENSSSCT00065039285.1 UniProtKB/TrEMBL
  ENSSSCT00065039288.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot
  1.20.58.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.20.70.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.60.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calponin-like domain UniProtKB/TrEMBL
  EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Actinin_actin-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dystrophin/utrophin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand_dom_typ1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand_dom_typ2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin/alpha-actinin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_ZZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_ZZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:497636 UniProtKB/Swiss-Prot
NCBI Gene DMD ENTREZGENE
PANTHER DYSTROPHIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE KCMF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EF-hand_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF-hand_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00307 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00397 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00569 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PIRSF Dystrophin/utrophin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ACTININ_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACTININ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_ZZ_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_ZZ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00033 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00456 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPEC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_ZZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Calponin-homology domain, CH-domain UniProtKB/TrEMBL
  RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47576 UniProtKB/Swiss-Prot
  SSF51045 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286ZSQ2_PIG UniProtKB/TrEMBL
  A0A480Z486 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QTV4_PIG UniProtKB/TrEMBL
  A0A5G2QY27 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R988_PIG UniProtKB/TrEMBL
  A0A8D0S4D0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VCC5_PIG UniProtKB/TrEMBL
  A0A8D0VCI5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HZC0_PIG UniProtKB/TrEMBL
  A0A8D1M2E2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1S885 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TC61 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1VFH6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2BJZ1 ENTREZGENE, UniProtKB/TrEMBL
  DMD_PIG UniProtKB/Swiss-Prot
  F1SPU7_PIG UniProtKB/TrEMBL
  I3LG08_PIG UniProtKB/TrEMBL
  I3LPH8_PIG UniProtKB/TrEMBL
  Q5GN48 ENTREZGENE