FLRT2 (fibronectin leucine rich transmembrane protein 2) - Rat Genome Database

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Gene: FLRT2 (fibronectin leucine rich transmembrane protein 2) Sus scrofa
Analyze
Symbol: FLRT2
Name: fibronectin leucine rich transmembrane protein 2
RGD ID: 14199104
Description: ENCODES a protein that exhibits chemorepellent activity (inferred); fibroblast growth factor receptor binding (inferred); INVOLVED IN axon guidance (ortholog); positive regulation of synapse assembly (ortholog); regulation of neuron migration (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN anchoring junction (inferred); cell-cell junction (inferred); endoplasmic reticulum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeat transmembrane protein FLRT2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7107,812,613 - 107,913,618 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17107,812,354 - 107,913,006 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27114,356,715 - 114,364,377 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FLRT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7107,812,613 - 107,913,618 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17107,812,354 - 107,913,006 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27114,356,715 - 114,364,377 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FLRT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381485,530,144 - 85,654,428 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1485,530,144 - 85,654,428 (+)EnsemblGRCh38hg38GRCh38
GRCh371485,996,488 - 86,120,772 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361485,066,241 - 85,164,023 (+)NCBINCBI36Build 36hg18NCBI36
Build 341485,157,274 - 85,164,016NCBI
Celera1466,040,840 - 66,138,639 (+)NCBICelera
Cytogenetic Map14q31.3NCBI
HuRef1466,165,769 - 66,263,573 (+)NCBIHuRef
CHM1_11485,934,262 - 86,032,186 (+)NCBICHM1_1
T2T-CHM13v2.01479,742,250 - 79,868,256 (+)NCBIT2T-CHM13v2.0
Flrt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391295,658,780 - 95,751,989 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1295,659,000 - 95,751,989 (+)EnsemblGRCm39 Ensembl
GRCm381295,692,006 - 95,785,215 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1295,692,226 - 95,785,215 (+)EnsemblGRCm38mm10GRCm38
MGSCv371296,930,436 - 97,023,425 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361296,088,085 - 96,176,856 (+)NCBIMGSCv36mm8
Celera1296,935,203 - 97,028,175 (+)NCBICelera
Cytogenetic Map12ENCBI
cM Map1246.44NCBI
Flrt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86120,507,998 - 120,603,133 (+)NCBIGRCr8
mRatBN7.26114,777,547 - 114,872,688 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6114,777,599 - 114,872,785 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6114,942,341 - 115,033,832 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06115,241,032 - 115,330,613 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06114,575,936 - 114,665,510 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06119,518,459 - 119,613,534 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6119,519,714 - 119,609,296 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06128,739,108 - 128,832,871 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46119,569,366 - 119,658,949 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16119,648,546 - 119,665,217 (+)NCBI
Celera6112,434,783 - 112,524,482 (+)NCBICelera
Cytogenetic Map6q31NCBI
Flrt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554388,565,319 - 8,656,186 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554388,565,319 - 8,656,195 (+)NCBIChiLan1.0ChiLan1.0
FLRT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21586,647,366 - 86,747,309 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11485,861,376 - 85,972,952 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01466,114,208 - 66,738,948 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11485,482,218 - 85,579,867 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1485,572,250 - 85,574,232 (+)Ensemblpanpan1.1panPan2
FLRT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1857,234,748 - 57,334,598 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl857,326,238 - 57,328,220 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha856,811,905 - 56,911,952 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0857,490,477 - 57,590,816 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl857,490,620 - 57,587,420 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1857,184,414 - 57,280,451 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0857,218,309 - 57,318,324 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0857,560,012 - 57,660,315 (+)NCBIUU_Cfam_GSD_1.0
Flrt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864018,611,370 - 18,696,033 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648813,373,030 - 13,457,300 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648813,372,889 - 13,457,586 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FLRT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12463,169,746 - 63,174,743 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2463,170,210 - 63,172,192 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605350,601,261 - 50,701,130 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Flrt2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473416,587,357 - 16,676,063 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473416,587,367 - 16,674,998 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FLRT2
2762 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 1 6 2
Low 8 3 3 4 2 17 2 1 1
Below cutoff 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000059328   ⟹   ENSSSCP00000035460
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7107,812,613 - 107,913,001 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000061503   ⟹   ENSSSCP00000050918
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7107,815,826 - 107,913,618 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000073487   ⟹   ENSSSCP00000062610
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7107,816,213 - 107,911,108 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000074329   ⟹   ENSSSCP00000067813
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7107,815,723 - 107,913,007 (+)Ensembl
RefSeq Acc Id: XM_021099586   ⟹   XP_020955245
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17107,815,691 - 107,913,006 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099587   ⟹   XP_020955246
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17107,812,354 - 107,913,006 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099588   ⟹   XP_020955247
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17107,858,556 - 107,913,006 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099589   ⟹   XP_020955248
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17107,859,135 - 107,913,006 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099590   ⟹   XP_020955249
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17107,861,938 - 107,913,006 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020955246   ⟸   XM_021099587
- UniProtKB: A0A8D1F476 (UniProtKB/TrEMBL),   A0A286ZV27 (UniProtKB/TrEMBL),   A0A4X1SZU0 (UniProtKB/TrEMBL),   A0A480Y2I8 (UniProtKB/TrEMBL),   A0A8D0IL25 (UniProtKB/TrEMBL),   A0A8D1F5S2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955245   ⟸   XM_021099586
- UniProtKB: A0A8D1F476 (UniProtKB/TrEMBL),   A0A286ZV27 (UniProtKB/TrEMBL),   A0A4X1SZU0 (UniProtKB/TrEMBL),   A0A480Y2I8 (UniProtKB/TrEMBL),   A0A8D0IL25 (UniProtKB/TrEMBL),   A0A8D1F5S2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955247   ⟸   XM_021099588
- UniProtKB: A0A8D1F476 (UniProtKB/TrEMBL),   A0A286ZV27 (UniProtKB/TrEMBL),   A0A4X1SZU0 (UniProtKB/TrEMBL),   A0A480Y2I8 (UniProtKB/TrEMBL),   A0A8D0IL25 (UniProtKB/TrEMBL),   A0A8D1F5S2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955248   ⟸   XM_021099589
- UniProtKB: A0A8D1F476 (UniProtKB/TrEMBL),   A0A286ZV27 (UniProtKB/TrEMBL),   A0A4X1SZU0 (UniProtKB/TrEMBL),   A0A480Y2I8 (UniProtKB/TrEMBL),   A0A8D0IL25 (UniProtKB/TrEMBL),   A0A8D1F5S2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020955249   ⟸   XM_021099590
- UniProtKB: A0A8D1F476 (UniProtKB/TrEMBL),   A0A286ZV27 (UniProtKB/TrEMBL),   A0A4X1SZU0 (UniProtKB/TrEMBL),   A0A480Y2I8 (UniProtKB/TrEMBL),   A0A8D0IL25 (UniProtKB/TrEMBL),   A0A8D1F5S2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000067813   ⟸   ENSSSCT00000074329
RefSeq Acc Id: ENSSSCP00000062610   ⟸   ENSSSCT00000073487
RefSeq Acc Id: ENSSSCP00000035460   ⟸   ENSSSCT00000059328
RefSeq Acc Id: ENSSSCP00000050918   ⟸   ENSSSCT00000061503
Protein Domains
Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040166 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005011253 UniProtKB/TrEMBL
  ENSSSCG00025048077 UniProtKB/TrEMBL
  ENSSSCG00035066802 UniProtKB/TrEMBL
  ENSSSCG00040055549 UniProtKB/TrEMBL
  ENSSSCG00045001726 UniProtKB/TrEMBL
  ENSSSCG00050008960 UniProtKB/TrEMBL
  ENSSSCG00055025211 UniProtKB/TrEMBL
  ENSSSCG00060050589 UniProtKB/TrEMBL
  ENSSSCG00070005226 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000059328 ENTREZGENE
  ENSSSCT00000059328.1 UniProtKB/TrEMBL
  ENSSSCT00000061503 ENTREZGENE
  ENSSSCT00000061503.2 UniProtKB/TrEMBL
  ENSSSCT00000073487.2 UniProtKB/TrEMBL
  ENSSSCT00005017291.1 UniProtKB/TrEMBL
  ENSSSCT00005017304.1 UniProtKB/TrEMBL
  ENSSSCT00005017307.1 UniProtKB/TrEMBL
  ENSSSCT00025065364.1 UniProtKB/TrEMBL
  ENSSSCT00025065410.1 UniProtKB/TrEMBL
  ENSSSCT00025065474.1 UniProtKB/TrEMBL
  ENSSSCT00035090041.1 UniProtKB/TrEMBL
  ENSSSCT00035090049.1 UniProtKB/TrEMBL
  ENSSSCT00035090054.1 UniProtKB/TrEMBL
  ENSSSCT00040075231.1 UniProtKB/TrEMBL
  ENSSSCT00040075268.1 UniProtKB/TrEMBL
  ENSSSCT00040075289.1 UniProtKB/TrEMBL
  ENSSSCT00045002718.1 UniProtKB/TrEMBL
  ENSSSCT00045002727.1 UniProtKB/TrEMBL
  ENSSSCT00045002735.1 UniProtKB/TrEMBL
  ENSSSCT00045002742.1 UniProtKB/TrEMBL
  ENSSSCT00050012116.1 UniProtKB/TrEMBL
  ENSSSCT00050012125.1 UniProtKB/TrEMBL
  ENSSSCT00050012130.1 UniProtKB/TrEMBL
  ENSSSCT00055049795.1 UniProtKB/TrEMBL
  ENSSSCT00055049832.1 UniProtKB/TrEMBL
  ENSSSCT00055049845.1 UniProtKB/TrEMBL
  ENSSSCT00060068790.1 UniProtKB/TrEMBL
  ENSSSCT00060068795.1 UniProtKB/TrEMBL
  ENSSSCT00060068796.1 UniProtKB/TrEMBL
  ENSSSCT00060068798.1 UniProtKB/TrEMBL
  ENSSSCT00070009889.1 UniProtKB/TrEMBL
  ENSSSCT00070009892.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
NCBI Gene FLRT2 ENTREZGENE
PANTHER AGAP008170-PA UniProtKB/TrEMBL
  LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN FLRT2 UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A286ZV27 ENTREZGENE, UniProtKB/TrEMBL
  A0A480Y2I8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SZU0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IL25 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1F476 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1F5S2 ENTREZGENE
UniProt Secondary A0A8D1F5S2 UniProtKB/TrEMBL
VGNC ID VGNC:88161 ENTREZGENE