FAM98B (family with sequence similarity 98 member B) - Rat Genome Database

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Gene: FAM98B (family with sequence similarity 98 member B) Sus scrofa
Analyze
Symbol: FAM98B
Name: family with sequence similarity 98 member B
RGD ID: 14198855
Description: ENCODES a protein that exhibits identical protein binding (inferred); protein methyltransferase activity (inferred); INVOLVED IN positive regulation of cell population proliferation (inferred); positive regulation of gene expression (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); intracellular membrane-bounded organelle (inferred); nucleoplasm (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein FAM98B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1132,789,275 - 132,819,489 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11132,786,198 - 132,819,291 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21148,274,497 - 148,303,757 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FAM98B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1132,789,275 - 132,819,489 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11132,786,198 - 132,819,291 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21148,274,497 - 148,303,757 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM98B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381538,454,127 - 38,487,710 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1538,454,127 - 38,487,710 (+)EnsemblGRCh38hg38GRCh38
GRCh371538,746,328 - 38,779,911 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361536,533,620 - 36,564,355 (+)NCBINCBI36Build 36hg18NCBI36
Celera1515,513,352 - 15,544,221 (+)NCBICelera
Cytogenetic Map15q14NCBI
HuRef1515,591,076 - 15,621,710 (+)NCBIHuRef
CHM1_11538,865,511 - 38,896,190 (+)NCBICHM1_1
T2T-CHM13v2.01536,259,418 - 36,292,996 (+)NCBIT2T-CHM13v2.0
Fam98b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392117,080,150 - 117,102,021 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2117,080,220 - 117,102,021 (+)EnsemblGRCm39 Ensembl
GRCm382117,249,713 - 117,271,540 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2117,249,739 - 117,271,540 (+)EnsemblGRCm38mm10GRCm38
MGSCv372117,075,475 - 117,097,276 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362116,941,180 - 116,962,981 (+)NCBIMGSCv36mm8
Celera2118,378,397 - 118,400,195 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.15NCBI
Fam98b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83124,588,827 - 124,618,275 (+)NCBIGRCr8
mRatBN7.23104,134,803 - 104,164,249 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3104,134,824 - 104,163,704 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3107,790,464 - 107,814,412 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03116,385,973 - 116,409,921 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03114,046,366 - 114,070,315 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03108,944,094 - 108,977,480 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3108,944,141 - 108,977,721 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.03115,501,086 - 115,531,871 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43103,335,362 - 103,366,217 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3103,063,719 - 103,094,105 (+)NCBICelera
Cytogenetic Map3q35NCBI
Fam98b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554165,457,274 - 5,487,042 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554165,457,232 - 5,486,744 (+)NCBIChiLan1.0ChiLan1.0
FAM98B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21627,680,855 - 27,715,933 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11531,834,076 - 31,866,456 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01517,383,298 - 17,415,682 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11535,638,932 - 35,671,206 (+)NCBIpanpan1.1PanPan1.1panPan2
FAM98B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1305,802,656 - 5,839,256 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl305,802,734 - 5,837,657 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha305,854,122 - 5,891,225 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0305,923,614 - 5,960,713 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl305,923,650 - 5,960,711 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1305,849,236 - 5,886,191 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0305,948,447 - 5,985,532 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0306,083,787 - 6,120,889 (+)NCBIUU_Cfam_GSD_1.0
Fam98b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864084,270,675 - 84,301,278 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364712,118,820 - 2,148,767 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364712,118,797 - 2,149,346 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM98B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12644,484,020 - 44,523,548 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604896,407,976 - 96,441,507 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam98b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248045,660,307 - 5,691,409 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248045,660,628 - 5,690,325 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAM98B
684 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 4 1 2
Low 10 4 3 5 2 19 2 2 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000005291   ⟹   ENSSSCP00000005161
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1132,789,275 - 132,819,489 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000068466   ⟹   ENSSSCP00000069922
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1132,793,311 - 132,819,489 (-)Ensembl
RefSeq Acc Id: XM_005659764   ⟹   XP_005659821
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11132,786,198 - 132,819,291 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005659821   ⟸   XM_005659764
- UniProtKB: F1SS16 (UniProtKB/TrEMBL),   A0A8D1PRK4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000069922   ⟸   ENSSSCT00000068466
RefSeq Acc Id: ENSSSCP00000005161   ⟸   ENSSSCT00000005291


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004792 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005023185 UniProtKB/TrEMBL
  ENSSSCG00025005864 UniProtKB/TrEMBL
  ENSSSCG00030032408 UniProtKB/TrEMBL
  ENSSSCG00040054483 UniProtKB/TrEMBL
  ENSSSCG00055006510 UniProtKB/TrEMBL
  ENSSSCG00060061534 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005291 ENTREZGENE
  ENSSSCT00000005291.5 UniProtKB/TrEMBL
  ENSSSCT00000068466.2 UniProtKB/TrEMBL
  ENSSSCT00005037010.1 UniProtKB/TrEMBL
  ENSSSCT00025007832.1 UniProtKB/TrEMBL
  ENSSSCT00030044819.1 UniProtKB/TrEMBL
  ENSSSCT00040073981.1 UniProtKB/TrEMBL
  ENSSSCT00055012602.1 UniProtKB/TrEMBL
  ENSSSCT00060083976.1 UniProtKB/TrEMBL
InterPro FAM98 UniProtKB/TrEMBL
KEGG Report ssc:100522915 UniProtKB/TrEMBL
NCBI Gene FAM98B ENTREZGENE
PANTHER PROTEIN FAM98B UniProtKB/TrEMBL
  PTHR31353 UniProtKB/TrEMBL
Pfam DUF2465 UniProtKB/TrEMBL
PRINTS EGGSHELL UniProtKB/TrEMBL
UniProt A0A4X1UND6_PIG UniProtKB/TrEMBL
  A0A8D1PRK4 ENTREZGENE, UniProtKB/TrEMBL
  F1SS16 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A5G2R715 UniProtKB/TrEMBL
VGNC ID VGNC:87998 ENTREZGENE