POMGNT2 (protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)) - Rat Genome Database
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Gene: POMGNT2 (protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)) Sus scrofa
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Symbol: POMGNT2
Name: protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
RGD ID: 14198564
Description: INVOLVED IN neuron migration (ortholog); protein O-linked glycosylation (ortholog); protein O-linked mannosylation (ortholog); ASSOCIATED WITH Autosomal Recessive Limb-Girdle Muscular Dystrophy Type 24 (ortholog); congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog); Perinatal Death (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,523,983 - 26,526,133 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,503,610 - 26,526,185 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21329,115,735 - 29,138,369 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
POMGNT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,523,983 - 26,526,133 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,503,610 - 26,526,185 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21329,115,735 - 29,138,369 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POMGNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl343,079,232 - 43,106,079 (-)EnsemblGRCh38hg38GRCh38
GRCh38343,079,229 - 43,106,085 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37343,120,726 - 43,147,571 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36343,095,730 - 43,122,569 (-)NCBINCBI36hg18NCBI36
Celera343,058,234 - 43,085,072 (-)NCBI
Cytogenetic Map3p22.1NCBI
HuRef343,163,548 - 43,190,404 (-)NCBIHuRef
CHM1_1343,070,709 - 43,097,578 (-)NCBICHM1_1
Pomgnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,810,672 - 121,825,116 (-)NCBIGRCm39mm39
GRCm39 Ensembl9121,810,672 - 121,826,176 (-)Ensembl
GRCm389121,981,606 - 121,996,053 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,981,606 - 121,997,110 (-)EnsemblGRCm38mm10GRCm38
MGSCv379121,890,724 - 121,905,144 (-)NCBIGRCm37mm9NCBIm37
MGSCv369121,830,307 - 121,844,673 (-)NCBImm8
Celera9122,456,506 - 122,458,726 (-)NCBICelera
Cytogenetic Map9F4NCBI
Pomgnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28121,645,106 - 121,660,761 (-)NCBI
Rnor_6.0 Ensembl8130,615,711 - 130,617,833 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08130,615,482 - 130,631,144 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08129,791,153 - 129,792,895 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48126,952,294 - 126,954,036 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18126,972,030 - 126,973,773 (+)NCBI
Celera8120,769,878 - 120,771,620 (-)NCBICelera
Cytogenetic Map8q32NCBI
Pomgnt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542027,884,303 - 27,899,293 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542027,884,262 - 27,899,293 (+)NCBIChiLan1.0ChiLan1.0
POMGNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1344,035,357 - 44,059,142 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl344,035,815 - 44,037,557 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0342,973,492 - 42,997,288 (-)NCBIMhudiblu_PPA_v0panPan3
POMGNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2312,094,778 - 12,143,214 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12312,094,306 - 12,235,491 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Pomgnt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366952,117,506 - 2,141,859 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POMGNT2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1224,521,925 - 4,548,431 (-)NCBI
Pomgnt2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473076,811,200 - 76,832,299 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 7 4 3 5 2 22 2 3 1
Below cutoff 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000012363   ⟹   ENSSSCP00000012040
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1326,523,983 - 26,526,133 (+)Ensembl
RefSeq Acc Id: XM_003132141   ⟹   XP_003132189
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11326,503,610 - 26,526,185 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003132189 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003132189   ⟸   XM_003132141
- Sequence:
RefSeq Acc Id: ENSSSCP00000012040   ⟸   ENSSSCT00000012363
Protein Domains
Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011293 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00070009339 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000012040 UniProtKB/TrEMBL
  ENSSSCP00070015051 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012363 UniProtKB/TrEMBL
  ENSSSCT00070018126 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Glycosyltransferase_61 UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
KEGG Report ssc:100524525 UniProtKB/TrEMBL
NCBI Gene POMGNT2 ENTREZGENE
PANTHER PTHR20961 UniProtKB/TrEMBL
Pfam DUF563 UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
UniProt A0A4X1TGU2_PIG UniProtKB/TrEMBL
  F1SRD5_PIG UniProtKB/TrEMBL