CNP (2',3'-cyclic nucleotide 3' phosphodiesterase) - Rat Genome Database
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Gene: CNP (2',3'-cyclic nucleotide 3' phosphodiesterase) Sus scrofa
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Symbol: CNP
Name: 2',3'-cyclic nucleotide 3' phosphodiesterase
RGD ID: 14197632
Description: ENCODES a protein that exhibits 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity (ortholog); cyclic nucleotide binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); aging (ortholog); axonogenesis (ortholog); ASSOCIATED WITH alcoholic liver cirrhosis (ortholog); Alzheimer's disease (ortholog); Brain Injuries (ortholog); FOUND IN cell projection (ortholog); cytoplasm (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: 2',3'-cyclic-nucleotide 3'-phosphodiesterase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,758,081 - 20,776,868 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,758,081 - 20,765,655 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21221,048,293 - 21,055,830 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
CNP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,758,081 - 20,776,868 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,758,081 - 20,765,655 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21221,048,293 - 21,055,830 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CNP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1741,966,763 - 41,977,740 (+)EnsemblGRCh38hg38GRCh38
GRCh381741,966,795 - 41,977,740 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371740,118,813 - 40,129,758 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361737,372,285 - 37,383,280 (+)NCBINCBI36hg18NCBI36
Build 341737,372,284 - 37,383,280NCBI
Celera1736,773,458 - 36,784,455 (+)NCBI
Cytogenetic Map17q21.2NCBI
HuRef1735,884,123 - 35,895,118 (+)NCBIHuRef
CHM1_11740,354,523 - 40,365,518 (+)NCBICHM1_1
Cnp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911100,465,765 - 100,472,565 (+)NCBIGRCm39mm39
GRCm39 Ensembl11100,465,730 - 100,482,555 (+)Ensembl
GRCm3811100,574,909 - 100,591,875 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11100,574,904 - 100,591,729 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711100,436,253 - 100,443,053 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611100,391,065 - 100,397,815 (+)NCBImm8
Celera11111,195,104 - 111,201,904 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1163.47NCBI
Cnp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21085,511,164 - 85,517,723 (+)NCBI
Rnor_6.0 Ensembl1088,490,798 - 88,497,356 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01088,490,798 - 88,497,357 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01088,284,045 - 88,290,604 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41089,519,421 - 89,525,978 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11089,533,790 - 89,540,348 (+)NCBI
Celera1084,227,529 - 84,234,088 (+)NCBICelera
RH 3.4 Map10859.8RGD
Cytogenetic Map10q31NCBI
Cnp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,114,454 - 16,118,622 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,115,137 - 16,119,261 (+)NCBIChiLan1.0ChiLan1.0
CNP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11715,560,056 - 15,569,108 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1715,560,056 - 15,568,916 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01715,338,085 - 15,349,089 (-)NCBIMhudiblu_PPA_v0panPan3
CNP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl920,886,574 - 20,896,079 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1920,888,350 - 20,896,139 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cnp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649016,834,570 - 16,841,734 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103243434
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11664,288,583 - 64,296,940 (-)NCBI
ChlSab1.1 Ensembl1664,289,828 - 64,296,922 (-)Ensembl
Cnp
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247951,856,455 - 1,861,142 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 4 19
Low 10 2 3 1 2 4 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000018964   ⟹   ENSSSCP00000018459
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,758,081 - 20,765,477 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000048744   ⟹   ENSSSCP00000036865
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,758,081 - 20,764,558 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000049227   ⟹   ENSSSCP00000040638
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,758,081 - 20,776,868 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000059642   ⟹   ENSSSCP00000048981
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1220,758,081 - 20,765,553 (-)Ensembl
RefSeq Acc Id: XM_003131420   ⟹   XP_003131468
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11220,758,081 - 20,765,655 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021066991   ⟹   XP_020922650
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11220,758,081 - 20,765,355 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021066992   ⟹   XP_020922651
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11220,758,081 - 20,764,686 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003131468 (Get FASTA)   NCBI Sequence Viewer  
  XP_020922650 (Get FASTA)   NCBI Sequence Viewer  
  XP_020922651 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003131468   ⟸   XM_003131420
- Peptide Label: isoform X1
- UniProtKB: A0A287BD93 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020922650   ⟸   XM_021066991
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020922651   ⟸   XM_021066992
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000040638   ⟸   ENSSSCT00000049227
RefSeq Acc Id: ENSSSCP00000036865   ⟸   ENSSSCT00000048744
RefSeq Acc Id: ENSSSCP00000048981   ⟸   ENSSSCT00000059642
RefSeq Acc Id: ENSSSCP00000018459   ⟸   ENSSSCT00000018964


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017420 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070014610 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000018459 UniProtKB/TrEMBL
  ENSSSCP00000036865 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000040638 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000048981 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070023870 UniProtKB/TrEMBL
  ENSSSCP00070023879 UniProtKB/TrEMBL
  ENSSSCP00070023888 UniProtKB/TrEMBL
  ENSSSCP00070023892 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018964 UniProtKB/TrEMBL
  ENSSSCT00000048744 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000049227 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000059642 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070028647 UniProtKB/TrEMBL
  ENSSSCT00070028657 UniProtKB/TrEMBL
  ENSSSCT00070028666 UniProtKB/TrEMBL
  ENSSSCT00070028670 UniProtKB/TrEMBL
InterPro CNPase UniProtKB/TrEMBL
  cNuc_Pdiesterase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report ssc:100511587 UniProtKB/TrEMBL
NCBI Gene CNP ENTREZGENE
PANTHER PTHR10156 UniProtKB/TrEMBL
Pfam CNPase UniProtKB/TrEMBL
PIRSF CNPase UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF55144 UniProtKB/TrEMBL
UniProt A0A286ZZ12_PIG UniProtKB/TrEMBL
  A0A287A9L8_PIG UniProtKB/TrEMBL
  A0A287BD93 ENTREZGENE
  A0A4X1U2F5_PIG UniProtKB/TrEMBL
  A0A4X1U6Z9_PIG UniProtKB/TrEMBL
  A0A4X1U7L2_PIG UniProtKB/TrEMBL
  A0A4X1U7M1_PIG UniProtKB/TrEMBL
  F1S0P3_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287BD93 UniProtKB/TrEMBL
VGNC ID VGNC:86840 ENTREZGENE