NT5C1A (5'-nucleotidase, cytosolic IA) - Rat Genome Database

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Gene: NT5C1A (5'-nucleotidase, cytosolic IA) Sus scrofa
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Symbol: NT5C1A
Name: 5'-nucleotidase, cytosolic IA
RGD ID: 14196513
Description: ENCODES a protein that exhibits 5'-nucleotidase activity (ortholog); INVOLVED IN adenosine metabolic process (ortholog); purine nucleoside monophosphate catabolic process (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cytosolic 5'-nucleotidase 1A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl695,473,261 - 95,497,000 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1695,473,259 - 95,497,645 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2688,561,471 - 88,585,252 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA,ISO)

Molecular Function

References

Genomics

Comparative Map Data
NT5C1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl695,473,261 - 95,497,000 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1695,473,259 - 95,497,645 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2688,561,471 - 88,585,252 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NT5C1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl139,651,229 - 39,672,107 (-)EnsemblGRCh38hg38GRCh38
GRCh38139,651,229 - 39,672,107 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37140,116,901 - 40,137,779 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36139,897,380 - 39,910,297 (-)NCBINCBI36hg18NCBI36
Build 34139,793,885 - 39,806,803NCBI
Celera138,406,541 - 38,419,451 (-)NCBI
Cytogenetic Map1p34.2NCBI
HuRef138,243,165 - 38,256,339 (-)NCBIHuRef
CHM1_1140,240,158 - 40,253,074 (-)NCBICHM1_1
Nt5c1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394123,095,026 - 123,119,128 (+)NCBIGRCm39mm39
GRCm39 Ensembl4123,095,297 - 123,110,068 (+)Ensembl
GRCm384123,201,230 - 123,225,339 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4123,201,504 - 123,216,275 (+)EnsemblGRCm38mm10GRCm38
MGSCv374122,878,796 - 122,893,450 (+)NCBIGRCm37mm9NCBIm37
MGSCv364122,703,861 - 122,718,510 (+)NCBImm8
Celera4121,533,931 - 121,548,583 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
Nt5c1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25135,473,107 - 135,494,400 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl5135,473,231 - 135,499,338 (+)Ensembl
Rnor_6.05140,888,862 - 140,909,322 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5140,888,973 - 140,904,207 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05144,678,889 - 144,697,399 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45142,509,257 - 142,524,280 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15142,514,549 - 142,529,506 (+)NCBI
Celera5134,012,146 - 134,027,198 (+)NCBICelera
Cytogenetic Map5q36NCBI
Nt5c1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545217,172,217 - 17,188,756 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545217,172,217 - 17,188,597 (-)NCBIChiLan1.0ChiLan1.0
NT5C1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1140,268,821 - 40,289,221 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl140,275,870 - 40,289,221 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0138,943,479 - 38,962,804 (-)NCBIMhudiblu_PPA_v0panPan3
NT5C1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1153,209,771 - 3,230,104 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl153,209,869 - 3,222,983 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha153,468,550 - 3,488,826 (+)NCBI
ROS_Cfam_1.0153,329,926 - 3,350,213 (+)NCBI
UMICH_Zoey_3.1153,206,121 - 3,226,364 (+)NCBI
UNSW_CanFamBas_1.0153,267,136 - 3,287,417 (+)NCBI
UU_Cfam_GSD_1.0153,282,706 - 3,302,991 (+)NCBI
Nt5c1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505855,703,426 - 55,717,483 (-)NCBI
SpeTri2.0NW_00493647421,535,197 - 21,542,417 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NT5C1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12093,261,913 - 93,278,063 (-)NCBI
ChlSab1.1 Ensembl2093,264,543 - 93,277,688 (-)Ensembl
Vero_WHO_p1.0NW_02366603323,598,905 - 23,620,239 (-)NCBI
Nt5c1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476422,147,077 - 22,168,337 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system musculoskeletal system nervous system renal system
High
Medium 2 2
Low 19 2
Below cutoff 2 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000004058   ⟹   ENSSSCP00000003967
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl695,473,261 - 95,497,000 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000074484   ⟹   ENSSSCP00000072840
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl695,473,261 - 95,497,000 (-)Ensembl
RefSeq Acc Id: XM_021095989   ⟹   XP_020951648
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1695,473,259 - 95,497,645 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020951648 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020951648   ⟸   XM_021095989
- Sequence:
RefSeq Acc Id: ENSSSCP00000072840   ⟸   ENSSSCT00000074484
RefSeq Acc Id: ENSSSCP00000003967   ⟸   ENSSSCT00000004058


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003662 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000003967 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000072840 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004058 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000074484 UniProtKB/TrEMBL
InterPro 5-nucleotidase UniProtKB/TrEMBL
NCBI Gene NT5C1A ENTREZGENE
PANTHER PTHR31367 UniProtKB/TrEMBL
Pfam 5-nucleotidase UniProtKB/TrEMBL
UniProt A0A5G2R6Y4_PIG UniProtKB/TrEMBL
  F1SV04_PIG UniProtKB/TrEMBL
VGNC ID VGNC:90919 ENTREZGENE