RAB3GAP2 (RAB3 GTPase activating non-catalytic protein subunit 2) - Rat Genome Database

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Gene: RAB3GAP2 (RAB3 GTPase activating non-catalytic protein subunit 2) Sus scrofa
Analyze
Symbol: RAB3GAP2
Name: RAB3 GTPase activating non-catalytic protein subunit 2
RGD ID: 14194147
Description: ENCODES a protein that exhibits enzyme regulator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN establishment of protein localization to endoplasmic reticulum membrane (inferred); positive regulation of autophagosome assembly (inferred); positive regulation of endoplasmic reticulum tubular network organization (inferred); ASSOCIATED WITH amenorrhea (ortholog); cataract (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rab3 GTPase-activating protein non-catalytic subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl109,734,768 - 9,828,525 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1109,734,766 - 9,828,330 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21011,839,363 - 11,933,077 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RAB3GAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl109,734,768 - 9,828,525 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1109,734,766 - 9,828,330 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21011,839,363 - 11,933,077 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB3GAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381220,148,293 - 220,272,453 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1220,148,293 - 220,272,529 (-)EnsemblGRCh38hg38GRCh38
GRCh371220,321,635 - 220,445,795 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361218,390,350 - 218,512,375 (-)NCBINCBI36Build 36hg18NCBI36
Celera1193,540,819 - 193,665,052 (-)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1190,996,031 - 191,120,274 (-)NCBIHuRef
CHM1_11221,594,098 - 221,718,321 (-)NCBICHM1_1
T2T-CHM13v2.01219,387,567 - 219,511,733 (-)NCBIT2T-CHM13v2.0
Rab3gap2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391184,936,287 - 185,018,953 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1184,936,314 - 185,018,956 (+)EnsemblGRCm39 Ensembl
GRCm381185,204,088 - 185,286,756 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1185,204,117 - 185,286,759 (+)EnsemblGRCm38mm10GRCm38
MGSCv371187,028,047 - 187,110,625 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1192,159,446 - 192,244,162 (+)NCBICelera
Cytogenetic Map1H5NCBI
cM Map189.45NCBI
Rab3gap2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81399,288,984 - 99,362,817 (+)NCBIGRCr8
mRatBN7.21396,757,430 - 96,828,930 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1396,757,460 - 96,829,478 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1399,257,639 - 99,328,064 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013100,662,660 - 100,734,030 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01397,839,893 - 97,910,318 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013103,157,806 - 103,229,010 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13103,157,806 - 103,228,423 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013107,832,196 - 107,901,909 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413101,280,421 - 101,289,503 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113101,469,463 - 101,478,541 (+)NCBI
Celera1396,273,391 - 96,343,906 (+)NCBICelera
Cytogenetic Map13q26NCBI
Rab3gap2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555203,411,770 - 3,483,413 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555203,411,504 - 3,483,703 (+)NCBIChiLan1.0ChiLan1.0
RAB3GAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2129,143,723 - 29,265,101 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1129,105,715 - 29,227,461 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01195,720,895 - 195,842,619 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11200,757,097 - 200,878,799 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1200,757,097 - 200,878,819 (-)Ensemblpanpan1.1panPan2
RAB3GAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13814,927,670 - 15,025,554 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3814,928,628 - 15,025,865 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3814,968,524 - 15,068,260 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03814,961,174 - 15,061,430 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3814,961,178 - 15,061,734 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13814,971,503 - 15,071,123 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03815,317,420 - 15,417,223 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03815,605,648 - 15,706,129 (-)NCBIUU_Cfam_GSD_1.0
Rab3gap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934456,696,099 - 56,808,480 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366501,944,346 - 2,056,665 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366501,944,291 - 2,054,847 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB3GAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1259,293,791 - 9,411,950 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl259,293,838 - 9,415,319 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660559,595,754 - 9,714,799 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab3gap2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248353,765,114 - 3,826,155 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248353,764,480 - 3,826,271 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RAB3GAP2
5146 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 3 5 2 11 2 1
Low 8 2 12 2 1 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000011842   ⟹   ENSSSCP00000011539
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl109,734,768 - 9,828,525 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000039520   ⟹   ENSSSCP00000057641
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl109,734,768 - 9,828,525 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000050571   ⟹   ENSSSCP00000053302
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl109,734,768 - 9,828,525 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000058354   ⟹   ENSSSCP00000050944
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl109,734,772 - 9,828,291 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000060678   ⟹   ENSSSCP00000037589
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl109,734,792 - 9,828,240 (-)Ensembl
RefSeq Acc Id: XM_003130506   ⟹   XP_003130554
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1109,734,766 - 9,828,330 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064324   ⟹   XP_020919983
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1109,734,766 - 9,828,284 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064326   ⟹   XP_020919985
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1109,734,766 - 9,828,283 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064327   ⟹   XP_020919986
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1109,734,766 - 9,777,016 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002336185
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1109,734,766 - 9,828,330 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002336186
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1109,734,789 - 9,828,330 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002336187
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1109,734,766 - 9,827,507 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002336188
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1109,734,766 - 9,827,677 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002336189
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1109,734,766 - 9,828,170 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002336190
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1109,734,766 - 9,776,980 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003130554   ⟸   XM_003130506
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TQM3 (UniProtKB/TrEMBL),   A0A8D1J3L5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919983   ⟸   XM_021064324
- Peptide Label: isoform X2
- UniProtKB: A0A4X1TQG8 (UniProtKB/TrEMBL),   A0A8D1J316 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919985   ⟸   XM_021064326
- Peptide Label: isoform X2
- UniProtKB: A0A4X1TQG8 (UniProtKB/TrEMBL),   A0A8D1J316 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919986   ⟸   XM_021064327
- Peptide Label: isoform X3
- UniProtKB: A0A8D0X5R7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000057641   ⟸   ENSSSCT00000039520
RefSeq Acc Id: ENSSSCP00000053302   ⟸   ENSSSCT00000050571
RefSeq Acc Id: ENSSSCP00000050944   ⟸   ENSSSCT00000058354
RefSeq Acc Id: ENSSSCP00000037589   ⟸   ENSSSCT00000060678
RefSeq Acc Id: ENSSSCP00000011539   ⟸   ENSSSCT00000011842
Protein Domains
Rab3-GAP regulatory subunit N-terminal   Rab3GAP regulatory subunit C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010824 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005016278 UniProtKB/TrEMBL
  ENSSSCG00025015405 UniProtKB/TrEMBL
  ENSSSCG00030046504 UniProtKB/TrEMBL
  ENSSSCG00035043557 UniProtKB/TrEMBL
  ENSSSCG00045027491 UniProtKB/TrEMBL
  ENSSSCG00070010621 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011842.5 UniProtKB/TrEMBL
  ENSSSCT00000039520.3 UniProtKB/TrEMBL
  ENSSSCT00000050571 ENTREZGENE
  ENSSSCT00000050571.3 UniProtKB/TrEMBL
  ENSSSCT00000058354.3 UniProtKB/TrEMBL
  ENSSSCT00005027984.1 UniProtKB/TrEMBL
  ENSSSCT00005028011.1 UniProtKB/TrEMBL
  ENSSSCT00005028070.1 UniProtKB/TrEMBL
  ENSSSCT00005028095.1 UniProtKB/TrEMBL
  ENSSSCT00005028118.1 UniProtKB/TrEMBL
  ENSSSCT00005028135.1 UniProtKB/TrEMBL
  ENSSSCT00025021015.1 UniProtKB/TrEMBL
  ENSSSCT00025021182.1 UniProtKB/TrEMBL
  ENSSSCT00025021284.1 UniProtKB/TrEMBL
  ENSSSCT00030065516.1 UniProtKB/TrEMBL
  ENSSSCT00035057988.1 UniProtKB/TrEMBL
  ENSSSCT00035058009.1 UniProtKB/TrEMBL
  ENSSSCT00035058027.1 UniProtKB/TrEMBL
  ENSSSCT00045055372.1 UniProtKB/TrEMBL
  ENSSSCT00045055568.1 UniProtKB/TrEMBL
  ENSSSCT00045055813.1 UniProtKB/TrEMBL
  ENSSSCT00045056271.1 UniProtKB/TrEMBL
  ENSSSCT00045056643.1 UniProtKB/TrEMBL
  ENSSSCT00045056926.1 UniProtKB/TrEMBL
  ENSSSCT00045057142.1 UniProtKB/TrEMBL
  ENSSSCT00070021135.1 UniProtKB/TrEMBL
  ENSSSCT00070021185.1 UniProtKB/TrEMBL
  ENSSSCT00070021197.1 UniProtKB/TrEMBL
  ENSSSCT00070021209.1 UniProtKB/TrEMBL
  ENSSSCT00070021224.1 UniProtKB/TrEMBL
  ENSSSCT00070021231.1 UniProtKB/TrEMBL
InterPro Rab3-gap_reg UniProtKB/TrEMBL
  RAB3GAP2_C UniProtKB/TrEMBL
  RAB3GAP_N UniProtKB/TrEMBL
NCBI Gene RAB3GAP2 ENTREZGENE
PANTHER PTHR12472 UniProtKB/TrEMBL
  RAB3 GTPASE-ACTIVATING PROTEIN NON-CATALYTIC SUBUNIT UniProtKB/TrEMBL
Pfam RAB3GAP2_C UniProtKB/TrEMBL
  RAB3GAP2_N UniProtKB/TrEMBL
UniProt A0A287B4A4_PIG UniProtKB/TrEMBL
  A0A287BB18_PIG UniProtKB/TrEMBL
  A0A287BNI6_PIG UniProtKB/TrEMBL
  A0A4X1TKT0_PIG UniProtKB/TrEMBL
  A0A4X1TKY0_PIG UniProtKB/TrEMBL
  A0A4X1TMX1_PIG UniProtKB/TrEMBL
  A0A4X1TQG8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TQM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IVV9_PIG UniProtKB/TrEMBL
  A0A8D0IXH9_PIG UniProtKB/TrEMBL
  A0A8D0J1N7_PIG UniProtKB/TrEMBL
  A0A8D0J1Q4_PIG UniProtKB/TrEMBL
  A0A8D0X5R7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IZ85_PIG UniProtKB/TrEMBL
  A0A8D1IZR1_PIG UniProtKB/TrEMBL
  A0A8D1IZS4_PIG UniProtKB/TrEMBL
  A0A8D1J316 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1J3L5 ENTREZGENE, UniProtKB/TrEMBL
  F1S9J9_PIG UniProtKB/TrEMBL
VGNC ID VGNC:95833 ENTREZGENE