NICN1 (nicolin 1) - Rat Genome Database
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Gene: NICN1 (nicolin 1) Sus scrofa
Analyze
Symbol: NICN1
Name: nicolin 1
RGD ID: 14192954
Description: ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2P (ortholog); glycine encephalopathy (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nicolin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,002,658 - 32,007,217 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,002,658 - 32,007,266 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IBA,ISO)

Molecular Function

References

Genomics

Comparative Map Data
NICN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,002,658 - 32,007,217 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,002,658 - 32,007,266 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NICN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,422,333 - 49,429,326 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl349,422,946 - 49,429,326 (-)EnsemblGRCh38hg38GRCh38
GRCh38349,422,333 - 49,429,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,459,766 - 49,466,757 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,434,770 - 49,441,761 (-)NCBINCBI36hg18NCBI36
Build 34349,435,383 - 49,441,725NCBI
Celera349,424,553 - 49,431,543 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,519,494 - 49,526,483 (-)NCBIHuRef
CHM1_1349,412,534 - 49,419,525 (-)NCBICHM1_1
Nicn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,167,642 - 108,173,697 (+)NCBIGRCm39mm39
GRCm39 Ensembl9108,167,628 - 108,173,697 (+)Ensembl
GRCm389108,290,443 - 108,296,498 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,290,429 - 108,296,498 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,192,788 - 108,198,827 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,148,550 - 108,154,589 (+)NCBImm8
Celera9107,899,500 - 107,905,538 (+)NCBICelera
Cytogenetic Map9F2NCBI
Nicn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28108,976,393 - 108,981,620 (+)NCBI
Rnor_6.0 Ensembl8117,062,884 - 117,068,130 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08117,062,989 - 117,068,134 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08116,415,763 - 116,420,985 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,279,495 - 108,284,640 (+)NCBICelera
Cytogenetic Map8q32NCBI
Nicn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,358,251 - 1,363,470 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,358,251 - 1,363,481 (-)NCBIChiLan1.0ChiLan1.0
NICN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,595,232 - 50,601,612 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,595,232 - 50,601,612 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,350,753 - 49,357,161 (-)NCBIMhudiblu_PPA_v0panPan3
NICN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2039,810,692 - 39,814,354 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12039,810,692 - 39,814,354 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Nicn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365291,054,568 - 1,059,575 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NICN1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,821,663 - 10,825,405 (-)NCBI
ChlSab1.1 Ensembl2210,820,757 - 10,825,462 (-)Ensembl
Nicn1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,372,456 - 3,377,308 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 13
Low 8 4 3 5 2 10 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000063117   ⟹   ENSSSCP00000045827
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1332,002,660 - 32,007,198 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000078109   ⟹   ENSSSCP00000061449
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1332,002,658 - 32,007,217 (-)Ensembl
RefSeq Acc Id: XM_021068737   ⟹   XP_020924396
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11332,002,658 - 32,007,266 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020924396 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020924396   ⟸   XM_021068737
- Sequence:
RefSeq Acc Id: ENSSSCP00000061449   ⟸   ENSSSCT00000078109
RefSeq Acc Id: ENSSSCP00000045827   ⟸   ENSSSCT00000063117


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031594 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070003607 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000045827 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000061449 UniProtKB/TrEMBL
  ENSSSCP00070005519 UniProtKB/TrEMBL
  ENSSSCP00070005533 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000063117 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000078109 UniProtKB/TrEMBL
  ENSSSCT00070006765 UniProtKB/TrEMBL
  ENSSSCT00070006781 UniProtKB/TrEMBL
InterPro Nicolin-1 UniProtKB/TrEMBL
NCBI Gene NICN1 ENTREZGENE
PANTHER PTHR31239 UniProtKB/TrEMBL
UniProt A0A287APF6_PIG UniProtKB/TrEMBL
  A0A4X1SRX8_PIG UniProtKB/TrEMBL
  A0A4X1STP5_PIG UniProtKB/TrEMBL
  A0A5G2QBN1_PIG UniProtKB/TrEMBL