LOC100514323 (NACHT, LRR and PYD domains-containing protein 1a-like) - Rat Genome Database

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Gene: LOC100514323 (NACHT, LRR and PYD domains-containing protein 1a-like) Sus scrofa
Analyze
Symbol: LOC100514323
Name: NACHT, LRR and PYD domains-containing protein 1a-like
RGD ID: 14187184
Description: INVOLVED IN mRNA export from nucleus (inferred); regulation of DNA-templated transcription elongation (inferred); signal transduction (inferred); FOUND IN cytoplasm (inferred); THO complex part of transcription export complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11399,745,463 - 99,786,514 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213108,078,865 - 108,090,469 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100514323
824 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 2 3 5 7 2 1
Low 2 2 2 16 2 1 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: XM_021069727   ⟹   XP_020925386
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11399,745,463 - 99,786,514 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020925386   ⟸   XM_021069727
- UniProtKB: A0A4X1VGR2 (UniProtKB/TrEMBL),   A0A8D1SQG7 (UniProtKB/TrEMBL),   A0A8D0T020 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Death   FIIND


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00005026417 UniProtKB/TrEMBL
  ENSSSCG00015025222 UniProtKB/TrEMBL
  ENSSSCG00025064730 UniProtKB/TrEMBL
  ENSSSCG00030035753 UniProtKB/TrEMBL
  ENSSSCG00035062005 UniProtKB/TrEMBL
  ENSSSCG00040003042 UniProtKB/TrEMBL
  ENSSSCG00045035361 UniProtKB/TrEMBL
  ENSSSCG00050075383 UniProtKB/TrEMBL
  ENSSSCG00055009796 UniProtKB/TrEMBL
  ENSSSCG00060002740 UniProtKB/TrEMBL
  ENSSSCG00065044726 UniProtKB/TrEMBL
  ENSSSCG00070024303 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00005041760.1 UniProtKB/TrEMBL
  ENSSSCT00015033470.1 UniProtKB/TrEMBL
  ENSSSCT00025088783.1 UniProtKB/TrEMBL
  ENSSSCT00030049595.1 UniProtKB/TrEMBL
  ENSSSCT00035083342.1 UniProtKB/TrEMBL
  ENSSSCT00040003928.1 UniProtKB/TrEMBL
  ENSSSCT00045060707.1 UniProtKB/TrEMBL
  ENSSSCT00050103347.1 UniProtKB/TrEMBL
  ENSSSCT00055019151.1 UniProtKB/TrEMBL
  ENSSSCT00060003360.1 UniProtKB/TrEMBL
  ENSSSCT00060003365.1 UniProtKB/TrEMBL
  ENSSSCT00065061181.1 UniProtKB/TrEMBL
  ENSSSCT00070048534.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
InterPro DEATH-like_dom_sf UniProtKB/TrEMBL
  Death_domain UniProtKB/TrEMBL
  FIIND_dom UniProtKB/TrEMBL
  THO_THOC1 UniProtKB/TrEMBL
NCBI Gene LOC100514323 ENTREZGENE
PANTHER PTHR13265 UniProtKB/TrEMBL
  SI:DKEYP-97B10.3 UniProtKB/TrEMBL
Pfam Death UniProtKB/TrEMBL
  FIIND UniProtKB/TrEMBL
PROSITE DEATH_DOMAIN UniProtKB/TrEMBL
  FIIND UniProtKB/TrEMBL
SMART DEATH UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/TrEMBL
UniProt A0A4X1VGR2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0T020 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1SQG7 ENTREZGENE, UniProtKB/TrEMBL