STRA6 (signaling receptor and transporter of retinol STRA6) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: STRA6 (signaling receptor and transporter of retinol STRA6) Sus scrofa
Analyze
Symbol: STRA6
Name: signaling receptor and transporter of retinol STRA6
RGD ID: 14187104
Description: ENCODES a protein that exhibits retinal binding (inferred); retinol binding (inferred); retinol transmembrane transporter activity (inferred); INVOLVED IN establishment of localization in cell (ortholog); positive regulation of receptor signaling pathway via JAK-STAT (ortholog); response to retinoic acid (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; ASSOCIATED WITH Anophthalmia (ortholog); Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); FOUND IN plasma membrane (inferred); protein-containing complex (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: stimulated by retinoic acid 6; stimulated by retinoic acid gene 6 protein homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl759,318,011 - 59,347,266 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1759,317,930 - 59,347,274 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2763,936,184 - 63,965,508 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
STRA6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl759,318,011 - 59,347,266 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1759,317,930 - 59,347,274 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2763,936,184 - 63,965,508 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STRA6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381574,179,466 - 74,212,259 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1574,179,466 - 74,212,267 (-)EnsemblGRCh38hg38GRCh38
GRCh371574,471,807 - 74,502,046 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361572,258,860 - 72,282,245 (-)NCBINCBI36Build 36hg18NCBI36
Build 341572,258,862 - 72,282,245NCBI
Celera1551,418,988 - 51,448,552 (-)NCBICelera
Cytogenetic Map15q24.1NCBI
HuRef1551,265,478 - 51,295,736 (-)NCBIHuRef
CHM1_11574,590,002 - 74,620,238 (-)NCBICHM1_1
T2T-CHM13v2.01572,045,386 - 72,078,184 (-)NCBIT2T-CHM13v2.0
Stra6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39957,971,076 - 58,061,287 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl957,971,071 - 58,061,279 (+)EnsemblGRCm39 Ensembl
GRCm38958,063,793 - 58,154,004 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl958,063,788 - 58,153,996 (+)EnsemblGRCm38mm10GRCm38
MGSCv37957,976,895 - 58,001,804 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36957,927,486 - 57,952,090 (+)NCBIMGSCv36mm8
Celera955,363,368 - 55,388,212 (+)NCBICelera
Cytogenetic Map9BNCBI
cM Map931.63NCBI
Stra6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8867,444,757 - 67,464,719 (+)NCBIGRCr8
mRatBN7.2858,548,899 - 58,568,861 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl858,549,736 - 58,568,860 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx864,079,448 - 64,099,415 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0862,357,008 - 62,376,974 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0860,221,574 - 60,241,541 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0862,925,364 - 62,944,438 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl862,925,357 - 62,944,437 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0862,701,454 - 62,720,528 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4861,920,772 - 61,939,791 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1861,939,822 - 61,958,845 (+)NCBI
Celera858,013,586 - 58,032,719 (+)NCBICelera
Cytogenetic Map8q24NCBI
Stra6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554503,580,662 - 3,602,600 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554503,579,081 - 3,602,538 (+)NCBIChiLan1.0ChiLan1.0
STRA6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21663,403,177 - 63,433,441 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11567,566,763 - 67,597,027 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01553,117,891 - 53,150,790 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11572,740,868 - 72,773,802 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1572,741,482 - 72,770,876 (-)Ensemblpanpan1.1panPan2
STRA6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13037,331,834 - 37,359,449 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3037,331,832 - 37,353,529 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3037,267,455 - 37,295,072 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03037,538,888 - 37,566,524 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3037,538,924 - 37,560,014 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13037,491,016 - 37,518,679 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03037,516,933 - 37,544,523 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03037,772,499 - 37,800,122 (-)NCBIUU_Cfam_GSD_1.0
Stra6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640115,376,111 - 115,490,544 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647133,224,859 - 33,245,030 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647133,224,174 - 33,245,076 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STRA6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1269,275,317 - 9,311,302 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl269,278,303 - 9,311,475 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048132,311,962 - 132,346,794 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stra6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624781389,481 - 413,728 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624781304,890 - 413,655 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in STRA6
618 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 23 3 2 6 3 23 3 6 1

Sequence


Ensembl Acc Id: ENSSSCT00000002138   ⟹   ENSSSCP00000002088
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl759,318,011 - 59,347,266 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000066854   ⟹   ENSSSCP00000060976
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl759,318,011 - 59,347,266 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000096368   ⟹   ENSSSCP00000080894
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl759,318,011 - 59,347,266 (+)Ensembl
RefSeq Acc Id: XM_001928148   ⟹   XP_001928183
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,323,694 - 59,346,572 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005666158   ⟹   XP_005666215
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,318,915 - 59,346,572 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005666159   ⟹   XP_005666216
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,317,931 - 59,347,274 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013978087   ⟹   XP_013833541
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,317,930 - 59,346,572 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021099065   ⟹   XP_020954724
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1759,317,930 - 59,346,572 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020954724   ⟸   XM_021099065
- UniProtKB: A0A8D0SFA5 (UniProtKB/TrEMBL),   F1SIE2 (UniProtKB/TrEMBL),   A0A8D0VS95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013833541   ⟸   XM_013978087
- UniProtKB: A0A8D0SFA5 (UniProtKB/TrEMBL),   F1SIE2 (UniProtKB/TrEMBL),   A0A8D0VS95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005666216   ⟸   XM_005666159
- UniProtKB: A0A8D0SFA5 (UniProtKB/TrEMBL),   F1SIE2 (UniProtKB/TrEMBL),   A0A8D0VS95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005666215   ⟸   XM_005666158
- UniProtKB: A0A8D0SFA5 (UniProtKB/TrEMBL),   F1SIE2 (UniProtKB/TrEMBL),   A0A8D0VS95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_001928183   ⟸   XM_001928148
- UniProtKB: A0A8D0SFA5 (UniProtKB/TrEMBL),   F1SIE2 (UniProtKB/TrEMBL),   A0A8D0VS95 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000002088   ⟸   ENSSSCT00000002138
Ensembl Acc Id: ENSSSCP00000060976   ⟸   ENSSSCT00000066854
Ensembl Acc Id: ENSSSCP00000080894   ⟸   ENSSSCT00000096368


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001909 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015074721 UniProtKB/TrEMBL
  ENSSSCG00025051304 UniProtKB/TrEMBL
  ENSSSCG00030017234 UniProtKB/TrEMBL
  ENSSSCG00035020330 UniProtKB/TrEMBL
  ENSSSCG00040044357 UniProtKB/TrEMBL
  ENSSSCG00045020254 UniProtKB/TrEMBL
  ENSSSCG00050029497 UniProtKB/TrEMBL
  ENSSSCG00055015051 UniProtKB/TrEMBL
  ENSSSCG00060072570 UniProtKB/TrEMBL
  ENSSSCG00065044957 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002138 ENTREZGENE
  ENSSSCT00000002138.5 UniProtKB/TrEMBL
  ENSSSCT00000066854.2 UniProtKB/TrEMBL
  ENSSSCT00000096368.1 UniProtKB/TrEMBL
  ENSSSCT00015101327.1 UniProtKB/TrEMBL
  ENSSSCT00025070400.1 UniProtKB/TrEMBL
  ENSSSCT00030023869.1 UniProtKB/TrEMBL
  ENSSSCT00035026446.1 UniProtKB/TrEMBL
  ENSSSCT00040059873.1 UniProtKB/TrEMBL
  ENSSSCT00045034882.1 UniProtKB/TrEMBL
  ENSSSCT00050039688.1 UniProtKB/TrEMBL
  ENSSSCT00055030082.1 UniProtKB/TrEMBL
  ENSSSCT00060099597.1 UniProtKB/TrEMBL
  ENSSSCT00065061542.1 UniProtKB/TrEMBL
InterPro STRA6 UniProtKB/TrEMBL
KEGG Report ssc:100153335 UniProtKB/TrEMBL
NCBI Gene STRA6 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 180 UniProtKB/TrEMBL
  PTHR21444:SF16 UniProtKB/TrEMBL
Pfam RBP_receptor UniProtKB/TrEMBL
UniProt A0A5G2QAE9_PIG UniProtKB/TrEMBL
  A0A8D0SFA5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VS95 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FNG6_PIG UniProtKB/TrEMBL
  F1SIE2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93573 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-10-16 STRA6  signaling receptor and transporter of retinol STRA6  STRA6  stimulated by retinoic acid 6  Symbol and/or name change 5135510 APPROVED