HSPA1L (heat shock protein family A (Hsp70) member 1 like) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: HSPA1L (heat shock protein family A (Hsp70) member 1 like) Sus scrofa
Analyze
Symbol: HSPA1L
Name: heat shock protein family A (Hsp70) member 1 like
RGD ID: 14185755
Description: ENCODES a protein that exhibits unfolded protein binding (ortholog); INVOLVED IN binding of sperm to zona pellucida (ortholog); positive regulation of protein targeting to mitochondrion (ortholog); ASSOCIATED WITH chronic obstructive pulmonary disease (ortholog); Crohn's disease (ortholog); drug allergy (ortholog); FOUND IN cell body (ortholog); COP9 signalosome (ortholog); mitochondrial matrix (ortholog); INTERACTS WITH bis(2-chloroethyl) sulfide; deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: heat shock 10kDa protein 1-like; heat shock 70 kDa protein 1-like; Heat shock 70 kDa protein 1L; heat shock 70kDa protein 1-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,909,960 - 23,914,629 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,909,960 - 23,938,678 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HSPA1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,909,960 - 23,914,629 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,909,960 - 23,938,678 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HSPA1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,809,619 - 31,815,283 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,809,619 - 31,815,283 (-)EnsemblGRCh38hg38GRCh38
GRCh37631,777,396 - 31,783,060 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,885,375 - 31,890,814 (-)NCBINCBI36Build 36hg18NCBI36
Build 34631,885,374 - 31,890,786NCBI
Celera633,375,646 - 33,381,084 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,563,804 - 31,569,242 (-)NCBIHuRef
CHM1_1631,779,530 - 31,784,969 (-)NCBICHM1_1
T2T-CHM13v2.0631,662,676 - 31,668,340 (-)NCBIT2T-CHM13v2.0
Hspa1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,191,679 - 35,198,204 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,191,679 - 35,198,261 (+)EnsemblGRCm39 Ensembl
GRCm381734,972,703 - 34,979,228 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,972,703 - 34,979,285 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,109,648 - 35,116,173 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,580,788 - 34,587,281 (+)NCBIMGSCv36mm8
Celera1738,068,927 - 38,075,454 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.51NCBI
Hspa1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,853,496 - 3,860,223 (-)NCBIGRCr8
mRatBN7.2203,848,843 - 3,855,571 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,848,843 - 3,855,571 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,548,331 - 4,555,029 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,910,388 - 3,917,087 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,448,330 - 4,454,924 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0204,879,998 - 4,965,191 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,959,294 - 4,964,963 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,032,557 - 7,038,454 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera204,171,282 - 4,177,670 (+)NCBICelera
Cytogenetic Map20p12NCBI
HSPA1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,286,601 - 46,299,239 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,248,104 - 42,260,544 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,470,745 - 31,483,615 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,357,626 - 32,370,055 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,358,054 - 32,359,979 (-)Ensemblpanpan1.1panPan2
LOC474850
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,281,164 - 1,285,010 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,281,472 - 1,285,440 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,416,835 - 1,420,649 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,424,019 - 1,427,833 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,423,961 - 1,428,295 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,283,032 - 1,286,847 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,350,176 - 1,353,991 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,414,602 - 1,418,416 (-)NCBIUU_Cfam_GSD_1.0
LOC101956412
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,816,113 - 35,825,083 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,736,243 - 1,745,231 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,735,880 - 1,745,231 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103221744
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,206,365 - 40,211,996 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1740,209,754 - 40,211,676 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604431,724,065 - 31,729,529 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hspa1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,416,738 - 24,424,613 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,403,438 - 24,423,477 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HSPA1L
405 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 2 3 16 1 2
Below cutoff 6 4 4 2 6 2 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000032249   ⟹   ENSSSCP00000020097
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl723,909,960 - 23,914,456 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000069742   ⟹   ENSSSCP00000061231
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl723,910,090 - 23,914,629 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000086673   ⟹   ENSSSCP00000062659
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl723,910,094 - 23,921,723 (-)Ensembl
RefSeq Acc Id: NM_001123128   ⟹   NP_001116600
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1723,909,960 - 23,914,456 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021097960   ⟹   XP_020953619
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1723,910,070 - 23,938,678 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021097961   ⟹   XP_020953620
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1723,910,070 - 23,914,901 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001116600   ⟸   NM_001123128
- UniProtKB: B9TSS5 (UniProtKB/Swiss-Prot),   A5A8V7 (UniProtKB/Swiss-Prot),   A0A4X1V9D0 (UniProtKB/TrEMBL),   A0A8D0KBP3 (UniProtKB/TrEMBL),   A0A8D0TMR7 (UniProtKB/TrEMBL),   A0A8D0YW76 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020953619   ⟸   XM_021097960
- Peptide Label: isoform X1
- UniProtKB: A5A8V7 (UniProtKB/Swiss-Prot),   B9TSS5 (UniProtKB/Swiss-Prot),   A0A4X1V9D0 (UniProtKB/TrEMBL),   A0A8D0KBP3 (UniProtKB/TrEMBL),   A0A8D0TMR7 (UniProtKB/TrEMBL),   A0A8D0YW76 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020953620   ⟸   XM_021097961
- Peptide Label: isoform X1
- UniProtKB: A5A8V7 (UniProtKB/Swiss-Prot),   B9TSS5 (UniProtKB/Swiss-Prot),   A0A4X1V9D0 (UniProtKB/TrEMBL),   A0A8D0KBP3 (UniProtKB/TrEMBL),   A0A8D0TMR7 (UniProtKB/TrEMBL),   A0A8D0YW76 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000061231   ⟸   ENSSSCT00000069742
RefSeq Acc Id: ENSSSCP00000062659   ⟸   ENSSSCT00000086673
RefSeq Acc Id: ENSSSCP00000020097   ⟸   ENSSSCT00000032249


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000030368 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00005041167 UniProtKB/TrEMBL
  ENSSSCG00015080937 UniProtKB/TrEMBL
  ENSSSCG00025075465 UniProtKB/TrEMBL
  ENSSSCG00030056479 UniProtKB/TrEMBL
  ENSSSCG00035016785 UniProtKB/TrEMBL
  ENSSSCG00040046240 UniProtKB/TrEMBL
  ENSSSCG00045039477 UniProtKB/TrEMBL
  ENSSSCG00050012689 UniProtKB/TrEMBL
  ENSSSCG00055028461 UniProtKB/TrEMBL
  ENSSSCG00060063657 UniProtKB/TrEMBL
  ENSSSCG00065009517 UniProtKB/Swiss-Prot
  ENSSSCG00070023526 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000032249 ENTREZGENE
  ENSSSCT00000032249.3 UniProtKB/Swiss-Prot
  ENSSSCT00000069742 ENTREZGENE
  ENSSSCT00000069742.2 UniProtKB/TrEMBL
  ENSSSCT00005065894.1 UniProtKB/TrEMBL
  ENSSSCT00005065917.1 UniProtKB/TrEMBL
  ENSSSCT00005065922.1 UniProtKB/TrEMBL
  ENSSSCT00015110275.1 UniProtKB/TrEMBL
  ENSSSCT00025104098.1 UniProtKB/TrEMBL
  ENSSSCT00025104119.1 UniProtKB/TrEMBL
  ENSSSCT00025104155.1 UniProtKB/TrEMBL
  ENSSSCT00030078716.1 UniProtKB/TrEMBL
  ENSSSCT00030078727.1 UniProtKB/TrEMBL
  ENSSSCT00030078750.1 UniProtKB/TrEMBL
  ENSSSCT00035021511.1 UniProtKB/TrEMBL
  ENSSSCT00035021520.1 UniProtKB/TrEMBL
  ENSSSCT00040062164.1 UniProtKB/TrEMBL
  ENSSSCT00040062188.1 UniProtKB/TrEMBL
  ENSSSCT00040062219.1 UniProtKB/TrEMBL
  ENSSSCT00045068769.1 UniProtKB/TrEMBL
  ENSSSCT00045068770.1 UniProtKB/TrEMBL
  ENSSSCT00045068771.1 UniProtKB/TrEMBL
  ENSSSCT00050017112.1 UniProtKB/TrEMBL
  ENSSSCT00050017113.1 UniProtKB/TrEMBL
  ENSSSCT00050017116.1 UniProtKB/TrEMBL
  ENSSSCT00055056396.1 UniProtKB/TrEMBL
  ENSSSCT00055056428.1 UniProtKB/TrEMBL
  ENSSSCT00060086864.1 UniProtKB/TrEMBL
  ENSSSCT00060086885.1 UniProtKB/TrEMBL
  ENSSSCT00060086931.1 UniProtKB/TrEMBL
  ENSSSCT00065012647.1 UniProtKB/Swiss-Prot
  ENSSSCT00065012652.1 UniProtKB/Swiss-Prot
  ENSSSCT00065012663.1 UniProtKB/Swiss-Prot
  ENSSSCT00070046883.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.30.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.420.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ATPase_NBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glutamate_DH_NAD-spec UniProtKB/TrEMBL
  Heat_shock_70_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSP70_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSP70_peptide-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hsp_70_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100144518 UniProtKB/Swiss-Prot
NCBI Gene HSPA1L ENTREZGENE
PANTHER HEAT SHOCK 70 KDA PROTEIN 1-LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR19375 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HSP70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAD-GH UniProtKB/TrEMBL
PRINTS HEATSHOCK70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HSP70_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSP70_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HSP70_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF100920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF100934 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53067 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A4X1V9D0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0KBP3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LX95_PIG UniProtKB/TrEMBL
  A0A8D0TMR7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UFC9_PIG UniProtKB/TrEMBL
  A0A8D0YW76 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JEK1_PIG UniProtKB/TrEMBL
  A0A900R1F0_PIG UniProtKB/TrEMBL
  A5A8V7 ENTREZGENE
  B9TSS5 ENTREZGENE
  HS71L_PIG UniProtKB/Swiss-Prot
UniProt Secondary B9TSS5 UniProtKB/Swiss-Prot