CNTF (ciliary neurotrophic factor) - Rat Genome Database
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Gene: CNTF (ciliary neurotrophic factor) Sus scrofa
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Symbol: CNTF
Name: ciliary neurotrophic factor
RGD ID: 14184492
Description: ENCODES a protein that exhibits interleukin-6 receptor binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN membrane hyperpolarization (ortholog); muscle organ morphogenesis (ortholog); negative regulation of neuron death (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); Cerebral Hemorrhage (ortholog); FOUND IN cytosol (ortholog); neuronal cell body (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: ciliary neurotrophic factor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1212,492,777 - 12,495,401 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2212,129,497 - 12,133,389 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CNTF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1212,492,777 - 12,495,401 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2212,129,497 - 12,133,389 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CNTF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1158,622,665 - 58,625,733 (+)EnsemblGRCh38hg38GRCh38
GRCh381158,622,665 - 58,625,733 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371158,390,146 - 58,393,206 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,146,721 - 58,149,778 (+)NCBINCBI36hg18NCBI36
Build 341158,146,720 - 58,149,778NCBI
Celera1155,749,246 - 55,752,306 (+)NCBI
Cytogenetic Map11q12.1NCBI
HuRef1154,738,219 - 54,741,279 (+)NCBIHuRef
CHM1_11158,255,656 - 58,258,716 (+)NCBICHM1_1
Cntf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391912,740,892 - 12,742,996 (-)NCBIGRCm39mm39
GRCm381912,763,528 - 12,765,632 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1912,763,660 - 12,765,632 (-)EnsemblGRCm38mm10GRCm38
MGSCv371912,838,018 - 12,840,122 (-)NCBIGRCm37mm9NCBIm37
MGSCv361912,830,679 - 12,845,972 (-)NCBImm8
Celera1913,428,744 - 13,430,848 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.73NCBI
Cntf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01229,599,009 - 229,601,032 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1229,599,009 - 229,601,032 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01236,752,366 - 236,754,389 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41215,842,668 - 215,844,691 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11216,001,097 - 216,003,121 (-)NCBI
Celera1207,298,120 - 207,300,143 (-)NCBICelera
Cytogenetic Map1q43NCBI
RH 3.4 Map11492.6RGD
Cntf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555113,527,552 - 3,534,348 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555113,527,552 - 3,531,275 (+)NCBIChiLan1.0ChiLan1.0
CNTF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11157,336,792 - 57,341,127 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1157,336,792 - 57,341,121 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01153,876,081 - 53,882,870 (+)NCBIMhudiblu_PPA_v0panPan3
CNTF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11837,758,148 - 37,765,698 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cntf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365813,710,171 - 3,715,753 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTF
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl114,728,383 - 14,730,150 (-)Ensembl
ChlSab1.1114,724,562 - 14,730,698 (-)NCBI
Cntf
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248641,785,215 - 1,788,608 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003122707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU694851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU929527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU329035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U57644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003122707   ⟹   XP_003122755
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1212,492,777 - 12,495,401 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003122755 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC27342 (Get FASTA)   NCBI Sequence Viewer  
  ADU04445 (Get FASTA)   NCBI Sequence Viewer  
  ADU04446 (Get FASTA)   NCBI Sequence Viewer  
  ADU04447 (Get FASTA)   NCBI Sequence Viewer  
  ADU04448 (Get FASTA)   NCBI Sequence Viewer  
  ADU04449 (Get FASTA)   NCBI Sequence Viewer  
  ADU04450 (Get FASTA)   NCBI Sequence Viewer  
  ADU04451 (Get FASTA)   NCBI Sequence Viewer  
  ADU04452 (Get FASTA)   NCBI Sequence Viewer  
  ADU04453 (Get FASTA)   NCBI Sequence Viewer  
  ADU04454 (Get FASTA)   NCBI Sequence Viewer  
  ADU04455 (Get FASTA)   NCBI Sequence Viewer  
  ADU04456 (Get FASTA)   NCBI Sequence Viewer  
  ADU04457 (Get FASTA)   NCBI Sequence Viewer  
  ADU04458 (Get FASTA)   NCBI Sequence Viewer  
  ADU04459 (Get FASTA)   NCBI Sequence Viewer  
  ADU04460 (Get FASTA)   NCBI Sequence Viewer  
  ADU04461 (Get FASTA)   NCBI Sequence Viewer  
  ADU04462 (Get FASTA)   NCBI Sequence Viewer  
  ADU04463 (Get FASTA)   NCBI Sequence Viewer  
  ADU04464 (Get FASTA)   NCBI Sequence Viewer  
  ADU04465 (Get FASTA)   NCBI Sequence Viewer  
  ADU04466 (Get FASTA)   NCBI Sequence Viewer  
  ADU04467 (Get FASTA)   NCBI Sequence Viewer  
  ADU04468 (Get FASTA)   NCBI Sequence Viewer  
  ADU04469 (Get FASTA)   NCBI Sequence Viewer  
  ADU04470 (Get FASTA)   NCBI Sequence Viewer  
  ADU04471 (Get FASTA)   NCBI Sequence Viewer  
  ADU04472 (Get FASTA)   NCBI Sequence Viewer  
  ADU04473 (Get FASTA)   NCBI Sequence Viewer  
  O02732 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003122755   ⟸   XM_003122707
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00005007790 UniProtKB/Swiss-Prot
  ENSSSCG00015009195 UniProtKB/Swiss-Prot
  ENSSSCG00025028324 UniProtKB/Swiss-Prot
  ENSSSCG00030027394 UniProtKB/Swiss-Prot
  ENSSSCG00035031991 UniProtKB/Swiss-Prot
  ENSSSCG00040003304 UniProtKB/Swiss-Prot
  ENSSSCG00050028640 UniProtKB/Swiss-Prot
  ENSSSCG00060050507 UniProtKB/Swiss-Prot
Ensembl Protein ENSSSCP00005007150 UniProtKB/Swiss-Prot
  ENSSSCP00015004765 UniProtKB/Swiss-Prot
  ENSSSCP00025016226 UniProtKB/Swiss-Prot
  ENSSSCP00030017640 UniProtKB/Swiss-Prot
  ENSSSCP00035016940 UniProtKB/Swiss-Prot
  ENSSSCP00040001294 UniProtKB/Swiss-Prot
  ENSSSCP00050015952 UniProtKB/Swiss-Prot
  ENSSSCP00060029509 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00005012220 UniProtKB/Swiss-Prot
  ENSSSCT00015012115 UniProtKB/Swiss-Prot
  ENSSSCT00025038433 UniProtKB/Swiss-Prot
  ENSSSCT00030038384 UniProtKB/Swiss-Prot
  ENSSSCT00035042389 UniProtKB/Swiss-Prot
  ENSSSCT00040004135 UniProtKB/Swiss-Prot
  ENSSSCT00050038513 UniProtKB/Swiss-Prot
  ENSSSCT00060068667 UniProtKB/Swiss-Prot
InterPro 4_helix_cytokine-like_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ciliary_neurotrophic_fac_CNTF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene CNTF ENTREZGENE
PANTHER PTHR15196 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CNTF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47266 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CNTF_PIG UniProtKB/Swiss-Prot
  G8ABW7_PIG UniProtKB/TrEMBL
  O02732 ENTREZGENE