UPRT (uracil phosphoribosyltransferase homolog) - Rat Genome Database
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Gene: UPRT (uracil phosphoribosyltransferase homolog) Sus scrofa
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Symbol: UPRT
Name: uracil phosphoribosyltransferase homolog
RGD ID: 14183404
Description: INVOLVED IN female pregnancy (ortholog); lactation (ortholog); response to insulin (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Experimental Diabetes Mellitus (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX60,426,975 - 60,451,480 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X60,426,955 - 60,448,174 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X68,687,968 - 68,709,136 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
UPRT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX60,426,975 - 60,451,480 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X60,426,955 - 60,448,174 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X68,687,968 - 68,709,136 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UPRT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX75,156,388 - 75,304,885 (+)EnsemblGRCh38hg38GRCh38
GRCh38X75,156,369 - 75,304,897 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X74,376,204 - 74,524,732 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X74,410,686 - 74,441,159 (+)NCBINCBI36hg18NCBI36
CeleraX74,777,320 - 74,808,158 (+)NCBI
Cytogenetic MapXq13.3NCBI
HuRefX68,128,874 - 68,159,480 (+)NCBIHuRef
CHM1_1X74,386,787 - 74,417,624 (+)NCBICHM1_1
Uprt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X103,526,409 - 103,555,829 (+)NCBIGRCm39mm39
GRCm39 EnsemblX103,526,424 - 103,551,096 (+)Ensembl
GRCm38X104,482,803 - 104,512,223 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX104,482,818 - 104,507,490 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X101,678,121 - 101,701,601 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X100,685,501 - 100,708,981 (+)NCBImm8
CeleraX91,375,831 - 91,399,185 (+)NCBICelera
Cytogenetic MapXDNCBI
Uprt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X69,516,573 - 69,546,811 (+)NCBI
Rnor_6.0 EnsemblX75,382,598 - 75,407,217 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X75,382,553 - 75,408,541 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X76,184,934 - 76,210,907 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X92,511,044 - 92,535,135 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX70,870,490 - 70,896,599 (+)NCBICelera
Cytogenetic MapXq22NCBI
Uprt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555621,385,611 - 1,415,336 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555621,385,617 - 1,415,277 (+)NCBIChiLan1.0ChiLan1.0
UPRT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X74,639,179 - 74,675,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX74,639,179 - 74,675,221 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X64,524,889 - 64,561,439 (+)NCBIMhudiblu_PPA_v0panPan3
UPRT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX58,543,425 - 58,575,926 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X58,570,623 - 58,576,980 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Uprt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366831,432,004 - 1,454,004 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UPRT
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X64,815,163 - 64,846,198 (+)NCBI
ChlSab1.1 EnsemblX64,815,183 - 64,849,547 (+)Ensembl
Uprt
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248365,473,129 - 5,502,276 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2 3 2 1 16 2 2
Low 9 2 3 1 7 1 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000013586   ⟹   ENSSSCP00000013221
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX60,426,988 - 60,451,480 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000055659   ⟹   ENSSSCP00000045506
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX60,426,975 - 60,448,172 (+)Ensembl
RefSeq Acc Id: NM_001243289   ⟹   NP_001230218
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X60,427,010 - 60,448,173 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021079380   ⟹   XP_020935039
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X60,426,955 - 60,448,174 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001230218 (Get FASTA)   NCBI Sequence Viewer  
  XP_020935039 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020935039   ⟸   XM_021079380
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001230218   ⟸   NM_001243289
- Sequence:
RefSeq Acc Id: ENSSSCP00000045506   ⟸   ENSSSCT00000055659
RefSeq Acc Id: ENSSSCP00000013221   ⟸   ENSSSCT00000013586


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012425 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070028215 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000013221 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000045506 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070048077 UniProtKB/TrEMBL
  ENSSSCP00070048080 UniProtKB/TrEMBL
  ENSSSCP00070048081 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000013586 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000055659 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070056592 UniProtKB/TrEMBL
  ENSSSCT00070056595 UniProtKB/TrEMBL
  ENSSSCT00070056596 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.2020 UniProtKB/TrEMBL
InterPro PRibTrfase_dom UniProtKB/TrEMBL
  PRTase-like UniProtKB/TrEMBL
KEGG Report ssc:100151798 UniProtKB/TrEMBL
NCBI Gene UPRT ENTREZGENE
Superfamily-SCOP SSF53271 UniProtKB/TrEMBL
UniProt A0A287ANK1_PIG UniProtKB/TrEMBL
  A0A4X1VWE4_PIG UniProtKB/TrEMBL
  A0A4X1W0Z0_PIG UniProtKB/TrEMBL
  F1RPJ7_PIG UniProtKB/TrEMBL
VGNC ID VGNC:98403 ENTREZGENE