SLC28A3 (solute carrier family 28 member 3) - Rat Genome Database

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Gene: SLC28A3 (solute carrier family 28 member 3) Sus scrofa
Analyze
Symbol: SLC28A3
Name: solute carrier family 28 member 3
RGD ID: 14183180
Description: ENCODES a protein that exhibits nucleoside transmembrane transporter activity (inferred); purine-specific nucleoside:sodium symporter activity (inferred); pyrimidine- and adenosine-specific:sodium symporter activity (inferred); INVOLVED IN purine nucleoside transmembrane transport (ortholog); pyrimidine nucleoside transport (ortholog); retina homeostasis (ortholog); PARTICIPATES IN azathioprine pharmacodynamics pathway; gemcitabine pharmacodynamics pathway; gemcitabine pharmacokinetics pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); FOUND IN brush border membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: solute carrier family 28 (sodium-coupled nucleoside transporter), member 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1030,669,904 - 30,729,301 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11030,663,060 - 30,730,766 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21034,734,234 - 34,768,178 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC28A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1030,669,904 - 30,729,301 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11030,663,060 - 30,730,766 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21034,734,234 - 34,768,178 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC28A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38984,275,457 - 84,368,727 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl984,275,457 - 84,340,758 (-)EnsemblGRCh38hg38GRCh38
GRCh37986,890,372 - 86,983,642 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36986,082,912 - 86,173,233 (-)NCBINCBI36Build 36hg18NCBI36
Build 34984,122,645 - 84,212,967NCBI
Celera957,464,095 - 57,554,419 (-)NCBICelera
Cytogenetic Map9q21.32-q21.33NCBI
HuRef956,716,695 - 56,809,112 (-)NCBIHuRef
CHM1_1987,037,314 - 87,129,976 (-)NCBICHM1_1
T2T-CHM13v2.0996,425,798 - 96,519,059 (-)NCBIT2T-CHM13v2.0
Slc28a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391358,701,121 - 58,758,691 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1358,693,213 - 58,758,691 (-)EnsemblGRCm39 Ensembl
GRCm381358,553,307 - 58,610,877 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1358,545,399 - 58,610,877 (-)EnsemblGRCm38mm10GRCm38
MGSCv371358,654,668 - 58,712,238 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361358,562,930 - 58,620,491 (-)NCBIMGSCv36mm8
Celera1359,616,100 - 59,674,204 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1331.07NCBI
Slc28a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8176,068,034 - 6,120,421 (+)NCBIGRCr8
mRatBN7.2176,062,563 - 6,112,965 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,062,549 - 6,114,038 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx176,086,344 - 6,136,146 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0177,619,406 - 7,669,479 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0176,082,764 - 6,132,562 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0176,459,024 - 6,509,761 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl176,459,056 - 6,509,799 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0178,665,223 - 8,715,359 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41711,992,175 - 12,042,696 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11711,992,174 - 12,042,694 (+)NCBI
Celera176,174,351 - 6,224,191 (+)NCBICelera
Cytogenetic Map17p14NCBI
Slc28a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554322,894,935 - 2,947,330 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554322,892,594 - 2,948,196 (+)NCBIChiLan1.0ChiLan1.0
SLC28A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21183,435,004 - 83,499,435 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1983,442,587 - 83,505,373 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0940,525,543 - 40,604,426 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1983,629,202 - 83,721,337 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl983,629,202 - 83,693,822 (-)Ensemblpanpan1.1panPan2
SLC28A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1175,035,690 - 75,109,216 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl175,035,952 - 75,205,084 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0175,342,372 - 75,419,786 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl175,342,585 - 75,512,258 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1175,151,290 - 75,228,693 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0174,919,180 - 74,988,194 (+)NCBIUNSW_CanFamBas_1.0
UNSW_CanFamBas_1.0174,991,077 - 74,996,566 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0175,622,824 - 75,700,238 (+)NCBIUU_Cfam_GSD_1.0
Slc28a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947121,757,555 - 121,804,293 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004937156124,342 - 165,937 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC28A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11295,088,902 - 95,179,201 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1295,091,301 - 95,127,745 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603883,510,606 - 83,576,481 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc28a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248097,857,518 - 7,896,055 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248097,855,397 - 7,943,832 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC28A3
2145 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system nervous system reproductive system respiratory system
High
Medium 1
Low 8 1 1
Below cutoff 2 2 1 9 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000011997   ⟹   ENSSSCP00000011689
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1030,669,904 - 30,729,301 (+)Ensembl
RefSeq Acc Id: NM_001244637   ⟹   NP_001231566
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11030,669,904 - 30,729,314 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021064008   ⟹   XP_020919667
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11030,669,668 - 30,730,766 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021064009   ⟹   XP_020919668
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11030,663,060 - 30,730,766 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020919668   ⟸   XM_021064009
- Peptide Label: isoform X1
- UniProtKB: A0A4X1UYE9 (UniProtKB/TrEMBL),   F1S4H3 (UniProtKB/TrEMBL),   A0A8D0MQS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919667   ⟸   XM_021064008
- Peptide Label: isoform X1
- UniProtKB: A0A4X1UYE9 (UniProtKB/TrEMBL),   F1S4H3 (UniProtKB/TrEMBL),   A0A8D0MQS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231566   ⟸   NM_001244637
- UniProtKB: A0A8D0MQS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000011689   ⟸   ENSSSCT00000011997

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010960 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015013740 UniProtKB/TrEMBL
  ENSSSCG00025042419 UniProtKB/TrEMBL
  ENSSSCG00035037962 UniProtKB/TrEMBL
  ENSSSCG00040016229 UniProtKB/TrEMBL
  ENSSSCG00045020130 UniProtKB/TrEMBL
  ENSSSCG00050038563 UniProtKB/TrEMBL
  ENSSSCG00055013706 UniProtKB/TrEMBL
  ENSSSCG00060058556 UniProtKB/TrEMBL
  ENSSSCG00065012921 UniProtKB/TrEMBL
  ENSSSCG00070020117 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011997 ENTREZGENE
  ENSSSCT00000011997.4 UniProtKB/TrEMBL
  ENSSSCT00015018252.1 UniProtKB/TrEMBL
  ENSSSCT00025057468.1 UniProtKB/TrEMBL
  ENSSSCT00035050329.1 UniProtKB/TrEMBL
  ENSSSCT00040021810.1 UniProtKB/TrEMBL
  ENSSSCT00045034330.1 UniProtKB/TrEMBL
  ENSSSCT00050052021.1 UniProtKB/TrEMBL
  ENSSSCT00055026979.1 UniProtKB/TrEMBL
  ENSSSCT00060079873.1 UniProtKB/TrEMBL
  ENSSSCT00065017213.1 UniProtKB/TrEMBL
  ENSSSCT00070039903.1 UniProtKB/TrEMBL
InterPro C_nuclsd_transpt UniProtKB/TrEMBL
  C_nuclsd_transpt_met_bac UniProtKB/TrEMBL
  CNT_C_dom UniProtKB/TrEMBL
  CNT_N_dom UniProtKB/TrEMBL
  Gate_dom UniProtKB/TrEMBL
NCBI Gene SLC28A3 ENTREZGENE
PANTHER PTHR10590 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 28 MEMBER 3 UniProtKB/TrEMBL
Pfam Gate UniProtKB/TrEMBL
  Nucleos_tra2_C UniProtKB/TrEMBL
  Nucleos_tra2_N UniProtKB/TrEMBL
UniProt A0A4X1UYE9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MQS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1W5Z8_PIG UniProtKB/TrEMBL
  A0A8D2BZW0_PIG UniProtKB/TrEMBL
  F1S4H3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:95810 ENTREZGENE