LOC106509346 (olfactory receptor 5B3-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC106509346 (olfactory receptor 5B3-like) Sus scrofa
Analyze
Symbol: LOC106509346
Name: olfactory receptor 5B3-like
RGD ID: 14182364
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); odorant binding (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1212,653,777 - 12,654,721 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2212,314,654 - 12,315,598 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC106509346
31 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013994291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013994291   ⟹   XP_013849745
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1212,653,777 - 12,654,721 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013849745   ⟸   XM_013994291
- UniProtKB: A0A5G2QUK8 (UniProtKB/TrEMBL),   A0A8D0W7F8 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000057747 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005007441 UniProtKB/TrEMBL
  ENSSSCG00015010251 UniProtKB/TrEMBL
  ENSSSCG00025028838 UniProtKB/TrEMBL
  ENSSSCG00030027229 UniProtKB/TrEMBL
  ENSSSCG00035030715 UniProtKB/TrEMBL
  ENSSSCG00040003496 UniProtKB/TrEMBL
  ENSSSCG00045021485 UniProtKB/TrEMBL
  ENSSSCG00050000150 UniProtKB/TrEMBL
  ENSSSCG00055017564 UniProtKB/TrEMBL
  ENSSSCG00060051071 UniProtKB/TrEMBL
  ENSSSCG00065048863 UniProtKB/TrEMBL
  ENSSSCG00070025690 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000070980 ENTREZGENE
  ENSSSCT00000070980.1 UniProtKB/TrEMBL
  ENSSSCT00005011175.1 UniProtKB/TrEMBL
  ENSSSCT00015013410.1 UniProtKB/TrEMBL
  ENSSSCT00025039141.1 UniProtKB/TrEMBL
  ENSSSCT00030038076.1 UniProtKB/TrEMBL
  ENSSSCT00035040663.1 UniProtKB/TrEMBL
  ENSSSCT00040004374.1 UniProtKB/TrEMBL
  ENSSSCT00045036714.1 UniProtKB/TrEMBL
  ENSSSCT00050000155.1 UniProtKB/TrEMBL
  ENSSSCT00055034433.1 UniProtKB/TrEMBL
  ENSSSCT00060069492.1 UniProtKB/TrEMBL
  ENSSSCT00065066850.1 UniProtKB/TrEMBL
  ENSSSCT00070051356.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report ssc:106509346 UniProtKB/TrEMBL
NCBI Gene LOC106509346 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A4X1VPJ1_PIG UniProtKB/TrEMBL
  A0A5G2QUK8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IC86_PIG UniProtKB/TrEMBL
  A0A8D0W7F8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BUC7_PIG UniProtKB/TrEMBL
  A0A8D1I0E7_PIG UniProtKB/TrEMBL