SIMC1 (SUMO interacting motifs containing 1)

Gene: SIMC1 (SUMO interacting motifs containing 1) Sus scrofa

Analyze

Symbol:

SIMC1

Name:

SUMO interacting motifs containing 1

RGD ID:

14180632

Description:

ENCODES a protein that exhibits peptidase inhibitor activity (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); genetic disease (ortholog); Sotos syndrome (ortholog); FOUND IN cytoplasm (ortholog); PML body (ortholog); sarcomere (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C2H5orf25; C5orf25; SUMO-interacting motif-containing protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	81,539,712 - 81,613,703 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	81,539,713 - 81,613,705 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	83,191,121 - 83,265,106 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ehlers-Danlos syndrome dermatosparaxis type (ISO)

genetic disease (ISO)

Sotos syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (ISO)

PML body (ISO)

sarcomere (ISO)

Molecular Function

peptidase inhibitor activity (ISO)

protein binding (ISO)

SUMO polymer binding (IBA,IEA)

References

Additional References at PubMed

PMID:14681463	PMID:17145712

Genomics

Comparative Map Data

SIMC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	81,539,712 - 81,613,703 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	81,539,713 - 81,613,705 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	83,191,121 - 83,265,106 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SIMC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	176,238,424 - 176,345,989 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	176,238,367 - 176,345,991 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	175,665,427 - 175,772,992 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	175,597,969 - 175,705,598 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	172,729,463 - 172,780,341 (-)	NCBI		Celera
Cytogenetic Map	5	q35.2	NCBI
HuRef	5	170,646,796 - 170,697,503 (+)	NCBI		HuRef
HuRef	5	170,595,692 - 170,595,963 (+)	NCBI		HuRef
CHM1_1	5	175,096,131 - 175,205,820 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	176,781,997 - 176,890,337 (+)	NCBI		T2T-CHM13v2.0

Simc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	54,651,539 - 54,699,103 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	54,651,592 - 54,699,103 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	54,503,739 - 54,551,290 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	54,503,779 - 54,551,290 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	54,605,166 - 54,652,651 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	54,534,959 - 54,560,912 (+)	NCBI		MGSCv36	mm8
Celera	13	55,569,811 - 55,617,284 (+)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI
cM Map	13	28.74	NCBI

Simc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	10,066,855 - 10,112,010 (-)	NCBI		GRCr8
mRatBN7.2	17	10,061,752 - 10,106,938 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	10,061,757 - 10,106,910 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	10,076,066 - 10,121,186 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	11,609,576 - 11,654,584 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	10,072,504 - 10,117,625 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	10,598,564 - 10,640,655 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	10,599,223 - 10,640,548 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	12,724,160 - 12,767,955 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	16,125,086 - 16,150,734 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	10,134,593 - 10,179,625 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

Simc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955408	28,562,372 - 28,630,420 (+)	NCBI	ChiLan1.0	ChiLan1.0

SIMC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	171,323,380 - 171,426,775 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	169,462,812 - 169,565,045 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	171,543,624 - 171,643,253 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	178,646,031 - 178,716,202 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	178,663,009 - 178,715,676 (+)	Ensembl	panpan1.1		panPan2

SIMC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	36,980,710 - 37,058,032 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	36,981,286 - 37,058,002 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	36,948,195 - 37,025,422 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	37,348,281 - 37,425,323 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	37,348,291 - 37,425,331 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	37,173,566 - 37,250,562 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	37,361,189 - 37,438,425 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	37,870,236 - 37,947,484 (-)	NCBI		UU_Cfam_GSD_1.0

Simc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	121,468,458 - 121,549,270 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936597	493,387 - 574,174 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SIMC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	78,255,678 - 78,345,307 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	78,255,754 - 78,344,759 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	9,380,431 - 9,472,704 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Simc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624733	13,806,382 - 13,869,145 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SIMC1
1264 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium			1			1
Low	10	4	2	5	2	22	2	3	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005661476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021084429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021084430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK233169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK346198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU993810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01079398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000015361 ⟹ ENSSSCP00000014953

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	81,539,712 - 81,613,703 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000082264 ⟹ ENSSSCP00000061942

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	81,539,712 - 81,613,703 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000088552 ⟹ ENSSSCP00000070680

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	81,539,714 - 81,613,557 (-)	Ensembl

RefSeq Acc Id:

XM_005661476 ⟹ XP_005661533

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	81,539,713 - 81,613,702 (-)	NCBI

Sequence:

show sequence

GGGCGCAGGGTGATGGCCCAGGTTGTCGCCGCCGCCGCCGCTGCCGCCGCCTCAGCCACAGGAA
CTGAAGTCGCCGCCGCTCCCTTAGCTGCCGCCTCCTGGGTCGCCGGCCGCCCGCGCGCTGGCTC
GGCCGGGACCCGCAGCCATGGAGGACTTCATCGTGATCTCGGACGACAGCGGCTCCGAGAGCTC
CGGGGGGAATCGCTCCGGCCGGGCACGGAGGCTCCGCCGGGCCCTGTCCCGGACCCCTGGCACG
CTGCCCCGCCGTACCGTGGATTTCATTGACTTAACTAGAGAAACCAGACCAAGGGCAAAGGATC
GCAGTGGACTCTGTGTGATTGACCTGACAAGATCTGAGGAAGAAAACAGACCTATTGCCACTCT
TGACTTGACTCTAGAACCTGTCGCTCCTTCCCAGAAGGAGCCGGCCAGTCTTCAAACATGTGCC
AGCCTTTCCAGCAAAGAGATGATGGAAGGGCGGGTAGACAGAAGCTCTCGGCCTGCAGCTCGGA
GAATCATTAACAGTGATCCTGTGGATCTGGACCTTTTGGAAGAAACCACATTTGAAGGTCCCCA
ACCTCCTACTTCCCTCAGTGGGGACTCTCTTTATCCAGCAGAGCCGAATTGTAGTTCATCCGTA
TTCAAAGGTGACCTCAGCTTCTTTGCAAGCCTGCAGCTCTCTTCAGATGTTCACTCCCTCTCCC
CAATGAGCAATAACGGTAGCAGCAGCAATCAGAGGGCACCCTTTCCATGCCCACAGCAAGATGT
GCCTTGCCCACCGCAAGCCTTGCCCTGCCCACTGCGAGCCTCTCCATGTCCACCGCGAGCCTCC
TCATGCCCACCACGAGCCTTGTCATGCCCATCACAAACCGTGCAGTGCCAGCTACAAACCTTGC
CTCACCTTCCTCAAGAAGTGCCATACCCTCCTCAAGAAGTGCCATGCCCCCCTCAAGATGTACC
ATGCCCTCCTCAAGATGGTCTGTGTCCTCAAAATGTGCCATGCCCTCAGCGGAATATGCCAAGT
CCACCTCAAGACTCACCATGGCATTCTCAACTCTCACCAAGCCCACCTCAAGACTCACTGGGCC
TGCCTCAAGGTGTACCAGGCCCACCTCAAAACATATCATATCCACAAAATGTGGCATACCTACA
AGACATGCCACAGTCCCTGGGAGACCTGCCACCATCACCAGATGTGCCACAGTCATTGGTAGAC
ATGCCAAAGTCATCAAGAGACATACCACAGTCACCAGCAGATGTGCCACAGTCACCAGAAGACA
TACCACAGTCACCAAGAGACATGCCACAGTCACCAGGAAGTGTACCGCATTCACCTAGGGAAGT
CCCACACTTGTCAGGAGATGTGCTCCGCTCACCTGGAGACGTGCCAGGCTCACCGGAAGACATG
CCACACACACTTAGAGACTTGCCTCGTTTACCACGAATCAGGCCTGACTCACCCCAAAATGATG
TGCAGAGCCATGACACGCCTATGGAAGTCTCAGCCCCATCCTCTCCAAGCTGCTCTCCCAGCCC
ACAGTCTCCACAGTTTGAAACTTCCTTAGAGAAAATTCCTTGGCTCTCAGTCACAGAAACTCCA
ACCAGAAAAGAGACGTTACTGTCAGAGCCTGTCAACCCCGGGTCTACCCAGGTGCAAGTGCGAA
CACCACAAGGTGGGTTGTACAACAGACCGTGCCTGCATAGGTTGAAGTACTTCTTACGACCTCC
GGTGCACCACCTCTTCTTCCAGACACTAATACCAGATAAAGACACGAGAGAGAGCAAGGGTCAA
AAATTAGAACCTATCCCTCATCGAAGACTAAGGATGGTAACAAACACCATTGAAGAAAATTTTC
CCCTGGGGACCGTGCAGTTTTTGATGGACTTTGTGTCACCTCAGCATTATCCACCCAGAGAAAT
TGTGGCTCACATCATCCAGAAAATCCTGCTCAGTGGCTCCGAGACTGTGGATGTCCTAAAGGAG
GCCTACATGCTTCTCATGAAAATTCAACAGCTACATCCAGCTAATGCCAAGACGGTGGAGTGGG
ACTGGAAGCTGCTAGCATATGTCATGGAAGAAGAGGGACAAAATCTGCCTGGGCGTGTCCTTTT
TCTGCGTTACGTAGTGCAGACCCTGGAAGATGATTTCCAGCAGATCCTGAGGAAGCAGCGACAG
CACCTGCAGCAATCCATTGCAAGCACTGTGCTGTCCTGTGACAAGCAACCCCACAATGTCAGGG
ATGTCATCAAGTGGTTGGTCAAAGAAGTAACTGAAGACAGATTAACTCAGCCCCCAGATGAGAA
TCAGACATCTCCAGGAACAGGAATCTTGAAGGCCAACAGTAGCCAACCTTCTCCCCAGCCCAAC
CTGACAAAGAACACCAGTCAGCTGATTGTATGCCAGCTGCAGAGGATGCTGTCCATAGCTGTCG
AGGTGGACAGGACCCCCACGTGTAGCTCTAATAAGATTGCTGAAATGATGTTTGGGTTTGTGCT
GGACATTCCTGAGAGAAGTCAGAGAGAGATGTTCTTTACCACCATGGAAAGCCACCTTCTGCGC
TGCAAAGTGCTGGAGATCATATTCCTCCACAGCTGCGAAACACCCACCCGCCTGCCCTTGTCTC
TGGCCCAGGCCCTCTATTTTCTAAACAATTCCACGTCACTGCTCAAGTGTCAGTCAGATAAAAC
CCAGTGGCAGACATGGGATGAGCTGGTTGAGCATCTGCAGTTTCTGCTATCCAGTTACCAACAC
GTTTTAAGAGAGCACTTACGGAGTTCTGTGATTGATCGAAAAGACTTAATAATCAAAAGGATCA
AGCCCAAGCCCCAGCAAGGAGATGACATCACAGTGATGGACGTGGAGAAGCAGATCGAGGCCTT
CCGCGGCCGCCTGGTCCAGATGCTGGGGGAGCCACTCGTCCCACAGCTCCAAGACAAAGTGCAC
TTGTTGAAGCTCCTGCTTTTCTATGCTGCGGACCTGAACCCTGACACGGAGCCCTCCGCAAAGG
CCTGGAGCAGCCCCTGAGGTCCCTCTAGGCACTGAACACCAAGAATACCTCCTGAACTCCACCT
CCAACTACTTGGAAGTTCTATAAGTATAAAAAGTAGTTTGAAATCTTATAGGACCAAACCCTAT
CTTATTTATCTGCAGGCTATAACTTTCTAACTCTTTACAAATTTTTTTTAATAATCCTATCCTA
GCCTGTTCTCAGATACGGCTTAAATATATATGGTGTATATATATTTTTTAATAAATTATTTATC
TATACTTTTTCTGAAACAGGTAATACTATATGCACTATATGTTTAACATTTCCATTCGAGCTGT
GAAAAAAGAATCCCTGTGTTGAACAACTTCGAGACATCAATGTTATGTCATTCAAGGTACTGAC
AAACCTATTTGGAAGGAGAAAGACATTCATTTCTCCCTAATGGAACCCAGACATCCTATATTGG
ACCTGTTATATTGCCTATGAATTTGACGTTGTGGCCAGTCTCTTCAGATCTGATGTAATGGGGG
GAGTGGGGCAGAAACAAAAGGATGGGTATGTTACAAAAATTTGATGTTAAAAGGATACAATAAA
AAGGCAACGGTTTTTTCAAAATA

hide sequence

RefSeq Acc Id:

XM_021084429 ⟹ XP_020940088

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	81,554,262 - 81,613,687 (-)	NCBI

Sequence:

show sequence

GCCCAGGTTGTCGCCGCCGCCGCCGCTGCCGCCGCCTCAGCCACAGGAACTGAAGTCGCCGCCG
CTCCCTTAGCTGCCGCCTCCTGGGTCGCCGGCCGCCCGCGCGCTGGCTCGGCCGGGACCCGCAG
CCATGGAGGACTTCATCGTGATCTCGGACGACAGCGGCTCCGAGAGCTCCGGGGGGAATCGCTC
CGGCCGGGCACGGAGGCTCCGCCGGGCCCTGTCCCGGACCCCTGGCACGCTGCCCCGCCGTACC
GTGGATTTCATTGACTTAACTAGAGAAACCAGACCAAGGGCAAAGGATCGCAGTGGACTCTGTG
TGATTGACCTGACAAGATCTGAGGAAGAAAACAGACCTATTGCCACTCTTGACTTGACTCTAGA
ACCTGTCGCTCCTTCCCAGAAGGAGCCGGCCAGTCTTCAAACATGTGCCAGCCTTTCCAGCAAA
GAGATGATGGAAGGGCGGGTAGACAGAAGCTCTCGGCCTGCAGCTCGGAGAATCATTAACAGTG
ATCCTGTGGATCTGGACCTTTTGGAAGAAACCACATTTGAAGGTCCCCAACCTCCTACTTCCCT
CAGTGGGGACTCTCTTTATCCAGCAGAGCCGAATTGTAGTTCATCCGTATTCAAAGGTGACCTC
AGCTTCTTTGCAAGCCTGCAGCTCTCTTCAGATGTTCACTCCCTCTCCCCAATGAGCAATAACG
GTAGCAGCAGCAATCAGAGGGCACCCTTTCCATGCCCACAGCAAGATGTGCCTTGCCCACCGCA
AGCCTTGCCCTGCCCACTGCGAGCCTCTCCATGTCCACCGCGAGCCTCCTCATGCCCACCACGA
GCCTTGTCATGCCCATCACAAACCGTGCAGTGCCAGCTACAAACCTTGCCTCACCTTCCTCAAG
AAGTGCCATACCCTCCTCAAGAAGTGCCATGCCCCCCTCAAGATGTACCATGCCCTCCTCAAGA
TGGTCTGTGTCCTCAAAATGTGCCATGCCCTCAGCGGAATATGCCAAGTCCACCTCAAGACTCA
CCATGGCATTCTCAACTCTCACCAAGCCCACCTCAAGACTCACTGGGCCTGCCTCAAGGTGTAC
CAGGCCCACCTCAAAACATATCATATCCACAAAATGTGGCATACCTACAAGACATGCCACAGTC
CCTGGGAGACCTGCCACCATCACCAGATGTGCCACAGTCATTGGTAGACATGCCAAAGTCATCA
AGAGACATACCACAGTCACCAGCAGATGTGCCACAGTCACCAGAAGACATACCACAGTCACCAA
GAGACATGCCACAGTCACCAGGAAGTGTACCGCATTCACCTAGGGAAGTCCCACACTTGTCAGG
AGATGTGCTCCGCTCACCTGGAGACGTGCCAGGCTCACCGGAAGACATGCCACACACACTTAGA
GACTTGCCTCGTTTACCACGAATCAGGCCTGACTCACCCCAAAATGATGTGCAGAGCCATGACA
CGCCTATGGAAGTCTCAGCCCCATCCTCTCCAAGCTGCTCTCCCAGCCCACAGTCTCCACAGTT
TGAAACTTCCTTAGAGAAAATTCCTTGGCTCTCAGTCACAGAAACTCCAACCAGAAAAGAGACG
TTACTGTCAGAGCCTGTCAACCCCGGGTCTACCCAGGTGCAAGTGCGAACACCACAAGGTGGGT
TGTACAACAGACCGTGCCTGCATAGGTTGAAGTACTTCTTACGACCTCCGGTGCACCACCTCTT
CTTCCAGACACTAATACCAGATAAAGACACGAGAGAGAGCAAGGGTCAAAAATTAGAACCTATC
CCTCATCGAAGACTAAGGATGGTAACAAACACCATTGAAGAAAATTTTCCCCTGGGGACCGTGC
AGTTTTTGATGGACTTTGTGTCACCTCAGCATTATCCACCCAGAGAAATTGTGGCTCACATCAT
CCAGAAAATCCTGCTCAGTGGCTCCGAGACTGTGGATGTCCTAAAGGAGGCCTACATGCTTCTC
ATGAAAATTCAACAGCTACATCCAGCTAATGCCAAGACGGTGGAGTGGGACTGGAAGCTGCTAG
CATATGTCATGGAAGAAGAGGGACAAAATCTGCCTGGGCGTGTCCTTTTTCTGCGTTACGTAGT
GCAGACCCTGGAAGATGATTTCCAGCAGATCCTGAGGAAGCAGCGACAGCACCTGCAGCAATCC
ATTGCAAGCACTGTGCTGTCCTGTGACAAGCAACCCCACAATGTCAGGGATGTCATCAAGTGGT
TGGTCAAAGAAGTAACTGAAGACAGATTAACTCAGCCCCCAGATGAGAATCAGACATCTCCAGG
AACAGGAATCTTGAAGGCCAACAGTAGCCAACCTTCTCCCCAGCCCAACCTGACAAAGAACACC
AGTCAGCTGATTGTATGCCAGCTGCAGAGGATGCTGTCCATAGCTGTCGAGGTGGACAGGACCC
CCACGTGTAGCTCTAATAAGATTGCTGAAATGATGTTTGGGTTTGTGCTGGACATTCCTGAGAG
AAGTCAGAGAGAGATGTTCTTTACCACCATGGAAAGCCACCTTCTGCGCTGCAAAGTGCTGGAG
ATCATATTCCTCCACAGCTGCGAAACACCCACCCGCCTGCCCTTGTCTCTGGCCCAGGCCCTCT
ATTTTCTAAACAATTCCACGTCACTGCTCAAGTGTCAGTCAGATAAAACCCAGTGGCAGACATG
GGATGAGCTGGTTGAGCATCTGCAGTTTCTGCTATCCAGTTACCAACACGTTTTAAGAGGGAAG
CACCAGACAAACCCAGATTGAAGGACCTTTTACAAAGGAACTTGCCTGCACTTTCAGAAGTCCC
AATGCCCTAAAAACAAAGAAAGACTGAAGAGCTATAACAAATTAAAAACAAACTAAAGCACATG
AATATTAAAGGCAAAACATGACCGTAGATGGGATCCTAAACCAGGAACAAAGAAGCTATAAAGT
ACATTATTGGAACAATAAGTAAATTTTAAATAGATTATGTGATAGTATTGTATTAACATTAAAT
TTCCTATTTTTTATAATTTATCCTGGCTTATGAAAGTAAATATCCTTGGTTTTAGGAAATCCCT
CTTGAAGTACTGAGGGCCACAGTGTCCAACTTATTCTCGAACAGTAAGGGGGGGAAAAGTGTGT
GTGTGAGTGTCTGTAGACACACATATATACATAATTTACCTGCTGTGATCATTTTGAGGTTGAG
AAAATAAGATGGTCCTTATACCCTCTTGGGCCTGGAACTGAGGAAGGTGTTACAGAAACATTCA
AGAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_021084430 ⟹ XP_020940089

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	81,564,262 - 81,613,705 (-)	NCBI

Sequence:

show sequence

GCGGGGCGCAGGGTGATGGCCCAGGTTGTCGCCGCCGCCGCCGCTGCCGCCGCCTCAGCCACAG
GAACTGAAGTCGCCGCCGCTCCCTTAGCTGCCGCCTCCTGGGTCGCCGGCCGCCCGCGCGCTGG
CTCGGCCGGGACCCGCAGCCATGGAGGACTTCATCGTGATCTCGGACGACAGCGGCTCCGAGAG
CTCCGGGGGGAATCGCTCCGGCCGGGCACGGAGGCTCCGCCGGGCCCTGTCCCGGACCCCTGGC
ACGCTGCCCCGCCGTACCGTGGATTTCATTGACTTAACTAGAGAAACCAGACCAAGGGCAAAGG
ATCGCAGTGGACTCTGTGTGATTGACCTGACAAGATCTGAGGAAGAAAACAGACCTATTGCCAC
TCTTGACTTGACTCTAGAACCTGTCGCTCCTTCCCAGAAGGAGCCGGCCAGTCTTCAAACATGT
GCCAGCCTTTCCAGCAAAGAGATGATGGAAGGGCGGGTAGACAGAAGCTCTCGGCCTGCAGCTC
GGAGAATCATTAACAGTGATCCTGTGGATCTGGACCTTTTGGAAGAAACCACATTTGAAGGTCC
CCAACCTCCTACTTCCCTCAGTGGGGACTCTCTTTATCCAGCAGAGCCGAATTGTAGTTCATCC
GTATTCAAAGGTGACCTCAGCTTCTTTGCAAGCCTGCAGCTCTCTTCAGATGTTCACTCCCTCT
CCCCAATGAGCAATAACGGTAGCAGCAGCAATCAGAGGGCACCCTTTCCATGCCCACAGCAAGA
TGTGCCTTGCCCACCGCAAGCCTTGCCCTGCCCACTGCGAGCCTCTCCATGTCCACCGCGAGCC
TCCTCATGCCCACCACGAGCCTTGTCATGCCCATCACAAACCGTGCAGTGCCAGCTACAAACCT
TGCCTCACCTTCCTCAAGAAGTGCCATACCCTCCTCAAGAAGTGCCATGCCCCCCTCAAGATGT
ACCATGCCCTCCTCAAGATGGTCTGTGTCCTCAAAATGTGCCATGCCCTCAGCGGAATATGCCA
AGTCCACCTCAAGACTCACCATGGCATTCTCAACTCTCACCAAGCCCACCTCAAGACTCACTGG
GCCTGCCTCAAGGTGTACCAGGCCCACCTCAAAACATATCATATCCACAAAATGTGGCATACCT
ACAAGACATGCCACAGTCCCTGGGAGACCTGCCACCATCACCAGATGTGCCACAGTCATTGGTA
GACATGCCAAAGTCATCAAGAGACATACCACAGTCACCAGCAGATGTGCCACAGTCACCAGAAG
ACATACCACAGTCACCAAGAGACATGCCACAGTCACCAGGAAGTGTACCGCATTCACCTAGGGA
AGTCCCACACTTGTCAGGAGATGTGCTCCGCTCACCTGGAGACGTGCCAGGCTCACCGGAAGAC
ATGCCACACACACTTAGAGACTTGCCTCGTTTACCACGAATCAGGCCTGACTCACCCCAAAATG
ATGTGCAGAGCCATGACACGCCTATGGAAGTCTCAGCCCCATCCTCTCCAAGCTGCTCTCCCAG
CCCACAGTCTCCACAGTTTGAAACTTCCTTAGAGAAAATTCCTTGGCTCTCAGTCACAGAAACT
CCAACCAGAAAAGAGACGTTACTGTCAGAGCCTGTCAACCCCGGGTCTACCCAGGTGCAAGTGC
GAACACCACAAGGTGGGTTGTACAACAGACCGTGCCTGCATAGGTTGAAGTACTTCTTACGACC
TCCGGTGCACCACCTCTTCTTCCAGACACTAATACCAGATAAAGACACGAGAGAGAGCAAGGGT
CAAAAATTAGAACCTATCCCTCATCGAAGACTAAGGATGGTAACAAACACCATTGAAGAAAATT
TTCCCCTGGGGACCGTGCAGTTTTTGATGGACTTTGTGTCACCTCAGCATTATCCACCCAGAGA
AATTGTGGCTCACATCATCCAGAAAATCCTGCTCAGTGGCTCCGAGACTGTGGATGTCCTAAAG
GAGGCCTACATGCTTCTCATGAAAATTCAACAGCTACATCCAGCTAATGCCAAGACGGTGGAGT
GGGACTGGAAGCTGCTAGCATATGTCATGGAAGAAGAGGGACAAAATCTGCCTGGGCGTGTCCT
TTTTCTGCGTTACGTAGTGCAGACCCTGGAAGATGATTTCCAGCAGATCCTGAGGAAGCAGCGA
CAGCACCTGCAGCAATCCATTGCAAGCACTGTGCTGTCCTGTGACAAGCAACCCCACAATGTCA
GGGATGTCATCAAGTGGTTGGTCAAAGAAGTAACTGAAGACAGATTAACTCAGCCCCCAGATGA
GAATCAGACATCTCCAGGAACAGGAATCTTGAAGGCCAACAGTAGCCAACCTTCTCCCCAGCCC
AACCTGACAAAGAACACCAGTCAGCTGATTGTATGCCAGCTGCAGAGGATGCTGTCCATAGCTG
TCGAGGTGGACAGGACCCCCACGTGTAGCTCTAATAAGATTGCTGAAATGATGTTTGGGTTTGT
GCTGGACATTCCTGAGAGAAGTCAGAGAAAACTCTACTTGGGGAGTTCCCGTCGTGGCTCAGTG
GTTAACGAGTCCGACTAAGAACCATGAGGTTGCGGATTTTATCCCTGCCCTTGCTCAGTGGGTG
AAGGATCCGGCATCGCCGTGAACTGTGGTGTAGGTCGCAGACGCAGCTCCGATCCTGCGTTGCT
GTGGCTCTGGTGTGGGCCGGCGGCTACAGCTCCGATTCAACCCCTAGCCTGGGAACTTCTATAT
GCCGCGGAAGCGGCCCAAGAAATGGCAAAAAGACAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005661533	(Get FASTA)	NCBI Sequence Viewer
	XP_020940088	(Get FASTA)	NCBI Sequence Viewer
	XP_020940089	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000070680.1
	ENSSSCP00015010160.1
	ENSSSCP00015010207.1
	ENSSSCP00025023288.1
	ENSSSCP00025023331.1
	ENSSSCP00030022799.1
	ENSSSCP00030022805.1
	ENSSSCP00030022812.1
	ENSSSCP00035007823.1
	ENSSSCP00035007824.1
	ENSSSCP00035007828.1
	ENSSSCP00040028961.1
	ENSSSCP00040029010.1
	ENSSSCP00045039282.1
	ENSSSCP00045039365.1
	ENSSSCP00050040319.1
	ENSSSCP00050040320.1
	ENSSSCP00055033239.1
	ENSSSCP00055033323.1
	ENSSSCP00055033400.1
	ENSSSCP00060033383.1
	ENSSSCP00060033387.1
	ENSSSCP00065035302.1
	ENSSSCP00065035306.1
	ENSSSCP00070002964.1

RefSeq Acc Id:	XP_005661533 ⟸ XM_005661476
- Peptide Label:	isoform X1
- UniProtKB:	F1S385 (UniProtKB/TrEMBL), A0A8D1ZJD5 (UniProtKB/TrEMBL), A0A4X1SKK3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEDFIVISDDSGSESSGGNRSGRARRLRRALSRTPGTLPRRTVDFIDLTRETRPRAKDRSGLCV IDLTRSEEENRPIATLDLTLEPVAPSQKEPASLQTCASLSSKEMMEGRVDRSSRPAARRIINSD PVDLDLLEETTFEGPQPPTSLSGDSLYPAEPNCSSSVFKGDLSFFASLQLSSDVHSLSPMSNNG SSSNQRAPFPCPQQDVPCPPQALPCPLRASPCPPRASSCPPRALSCPSQTVQCQLQTLPHLPQE VPYPPQEVPCPPQDVPCPPQDGLCPQNVPCPQRNMPSPPQDSPWHSQLSPSPPQDSLGLPQGVP GPPQNISYPQNVAYLQDMPQSLGDLPPSPDVPQSLVDMPKSSRDIPQSPADVPQSPEDIPQSPR DMPQSPGSVPHSPREVPHLSGDVLRSPGDVPGSPEDMPHTLRDLPRLPRIRPDSPQNDVQSHDT PMEVSAPSSPSCSPSPQSPQFETSLEKIPWLSVTETPTRKETLLSEPVNPGSTQVQVRTPQGGL YNRPCLHRLKYFLRPPVHHLFFQTLIPDKDTRESKGQKLEPIPHRRLRMVTNTIEENFPLGTVQ FLMDFVSPQHYPPREIVAHIIQKILLSGSETVDVLKEAYMLLMKIQQLHPANAKTVEWDWKLLA YVMEEEGQNLPGRVLFLRYVVQTLEDDFQQILRKQRQHLQQSIASTVLSCDKQPHNVRDVIKWL VKEVTEDRLTQPPDENQTSPGTGILKANSSQPSPQPNLTKNTSQLIVCQLQRMLSIAVEVDRTP TCSSNKIAEMMFGFVLDIPERSQREMFFTTMESHLLRCKVLEIIFLHSCETPTRLPLSLAQALY FLNNSTSLLKCQSDKTQWQTWDELVEHLQFLLSSYQHVLREHLRSSVIDRKDLIIKRIKPKPQQ GDDITVMDVEKQIEAFRGRLVQMLGEPLVPQLQDKVHLLKLLLFYAADLNPDTEPSAKAWSSP hide sequence

RefSeq Acc Id:	XP_020940088 ⟸ XM_021084429
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1RAA8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEDFIVISDDSGSESSGGNRSGRARRLRRALSRTPGTLPRRTVDFIDLTRETRPRAKDRSGLCV IDLTRSEEENRPIATLDLTLEPVAPSQKEPASLQTCASLSSKEMMEGRVDRSSRPAARRIINSD PVDLDLLEETTFEGPQPPTSLSGDSLYPAEPNCSSSVFKGDLSFFASLQLSSDVHSLSPMSNNG SSSNQRAPFPCPQQDVPCPPQALPCPLRASPCPPRASSCPPRALSCPSQTVQCQLQTLPHLPQE VPYPPQEVPCPPQDVPCPPQDGLCPQNVPCPQRNMPSPPQDSPWHSQLSPSPPQDSLGLPQGVP GPPQNISYPQNVAYLQDMPQSLGDLPPSPDVPQSLVDMPKSSRDIPQSPADVPQSPEDIPQSPR DMPQSPGSVPHSPREVPHLSGDVLRSPGDVPGSPEDMPHTLRDLPRLPRIRPDSPQNDVQSHDT PMEVSAPSSPSCSPSPQSPQFETSLEKIPWLSVTETPTRKETLLSEPVNPGSTQVQVRTPQGGL YNRPCLHRLKYFLRPPVHHLFFQTLIPDKDTRESKGQKLEPIPHRRLRMVTNTIEENFPLGTVQ FLMDFVSPQHYPPREIVAHIIQKILLSGSETVDVLKEAYMLLMKIQQLHPANAKTVEWDWKLLA YVMEEEGQNLPGRVLFLRYVVQTLEDDFQQILRKQRQHLQQSIASTVLSCDKQPHNVRDVIKWL VKEVTEDRLTQPPDENQTSPGTGILKANSSQPSPQPNLTKNTSQLIVCQLQRMLSIAVEVDRTP TCSSNKIAEMMFGFVLDIPERSQREMFFTTMESHLLRCKVLEIIFLHSCETPTRLPLSLAQALY FLNNSTSLLKCQSDKTQWQTWDELVEHLQFLLSSYQHVLRGKHQTNPD hide sequence

RefSeq Acc Id:	XP_020940089 ⟸ XM_021084430
- Peptide Label:	isoform X3
- UniProtKB:	A0A8D1RAA8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEDFIVISDDSGSESSGGNRSGRARRLRRALSRTPGTLPRRTVDFIDLTRETRPRAKDRSGLCV IDLTRSEEENRPIATLDLTLEPVAPSQKEPASLQTCASLSSKEMMEGRVDRSSRPAARRIINSD PVDLDLLEETTFEGPQPPTSLSGDSLYPAEPNCSSSVFKGDLSFFASLQLSSDVHSLSPMSNNG SSSNQRAPFPCPQQDVPCPPQALPCPLRASPCPPRASSCPPRALSCPSQTVQCQLQTLPHLPQE VPYPPQEVPCPPQDVPCPPQDGLCPQNVPCPQRNMPSPPQDSPWHSQLSPSPPQDSLGLPQGVP GPPQNISYPQNVAYLQDMPQSLGDLPPSPDVPQSLVDMPKSSRDIPQSPADVPQSPEDIPQSPR DMPQSPGSVPHSPREVPHLSGDVLRSPGDVPGSPEDMPHTLRDLPRLPRIRPDSPQNDVQSHDT PMEVSAPSSPSCSPSPQSPQFETSLEKIPWLSVTETPTRKETLLSEPVNPGSTQVQVRTPQGGL YNRPCLHRLKYFLRPPVHHLFFQTLIPDKDTRESKGQKLEPIPHRRLRMVTNTIEENFPLGTVQ FLMDFVSPQHYPPREIVAHIIQKILLSGSETVDVLKEAYMLLMKIQQLHPANAKTVEWDWKLLA YVMEEEGQNLPGRVLFLRYVVQTLEDDFQQILRKQRQHLQQSIASTVLSCDKQPHNVRDVIKWL VKEVTEDRLTQPPDENQTSPGTGILKANSSQPSPQPNLTKNTSQLIVCQLQRMLSIAVEVDRTP TCSSNKIAEMMFGFVLDIPERSQRKLYLGSSRRGSVVNESD hide sequence

RefSeq Acc Id:

ENSSSCP00000014953 ⟸ ENSSSCT00000015361

RefSeq Acc Id:

ENSSSCP00000070680 ⟸ ENSSSCT00000088552

RefSeq Acc Id:

ENSSSCP00000061942 ⟸ ENSSSCT00000082264

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000014062	Ensembl, UniProtKB/TrEMBL
	ENSSSCG00015019160	UniProtKB/TrEMBL
	ENSSSCG00025040163	UniProtKB/TrEMBL
	ENSSSCG00030036083	UniProtKB/TrEMBL
	ENSSSCG00035016806	UniProtKB/TrEMBL
	ENSSSCG00040050260	UniProtKB/TrEMBL
	ENSSSCG00045032907	UniProtKB/TrEMBL
	ENSSSCG00050068471	UniProtKB/TrEMBL
	ENSSSCG00055021238	UniProtKB/TrEMBL
	ENSSSCG00060056709	UniProtKB/TrEMBL
	ENSSSCG00065059216	UniProtKB/TrEMBL
	ENSSSCG00070001896	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000088552.2	UniProtKB/TrEMBL
	ENSSSCT00015025969.1	UniProtKB/TrEMBL
	ENSSSCT00015026082.1	UniProtKB/TrEMBL
	ENSSSCT00025054751.1	UniProtKB/TrEMBL
	ENSSSCT00025054876.1	UniProtKB/TrEMBL
	ENSSSCT00030050147.1	UniProtKB/TrEMBL
	ENSSSCT00030050158.1	UniProtKB/TrEMBL
	ENSSSCT00030050172.1	UniProtKB/TrEMBL
	ENSSSCT00035021534.1	UniProtKB/TrEMBL
	ENSSSCT00035021537.1	UniProtKB/TrEMBL
	ENSSSCT00035021542.1	UniProtKB/TrEMBL
	ENSSSCT00040068110.1	UniProtKB/TrEMBL
	ENSSSCT00040068197.1	UniProtKB/TrEMBL
	ENSSSCT00045056309.1	UniProtKB/TrEMBL
	ENSSSCT00045056409.1	UniProtKB/TrEMBL
	ENSSSCT00050093444.1	UniProtKB/TrEMBL
	ENSSSCT00050093448.1	UniProtKB/TrEMBL
	ENSSSCT00055041749.1	UniProtKB/TrEMBL
	ENSSSCT00055041856.1	UniProtKB/TrEMBL
	ENSSSCT00055041947.1	UniProtKB/TrEMBL
	ENSSSCT00060077249.1	UniProtKB/TrEMBL
	ENSSSCT00060077256.1	UniProtKB/TrEMBL
	ENSSSCT00065081088.1	UniProtKB/TrEMBL
	ENSSSCT00065081100.1	UniProtKB/TrEMBL
	ENSSSCT00070003579.1	UniProtKB/TrEMBL
KEGG Report	ssc:100513398	UniProtKB/TrEMBL
NCBI Gene	SIMC1	ENTREZGENE
PANTHER	FLJ44216 PROTEIN-RELATED	UniProtKB/TrEMBL
	SUMO-INTERACTING MOTIF-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
UniProt	A0A4X1SKK3	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2R0K0_PIG	UniProtKB/TrEMBL
	A0A8D0WPV5_PIG	UniProtKB/TrEMBL
	A0A8D1C6Z1_PIG	UniProtKB/TrEMBL
	A0A8D1F2C6_PIG	UniProtKB/TrEMBL
	A0A8D1IXE3_PIG	UniProtKB/TrEMBL
	A0A8D1L679_PIG	UniProtKB/TrEMBL
	A0A8D1RAA8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1RLM9_PIG	UniProtKB/TrEMBL
	A0A8D1W380_PIG	UniProtKB/TrEMBL
	A0A8D1ZJD5	ENTREZGENE, UniProtKB/TrEMBL
	F1S385	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:92878	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar