RSPO1 (R-spondin 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: RSPO1 (R-spondin 1) Sus scrofa
Analyze
Symbol: RSPO1
Name: R-spondin 1
RGD ID: 14178919
Description: ENCODES a protein that exhibits G protein-coupled receptor binding (inferred); heparin binding (inferred); signaling receptor binding (inferred); INVOLVED IN male meiotic nuclear division (ortholog); positive regulation of non-canonical Wnt signaling pathway (ortholog); regulation of gene expression (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); ovarian carcinoma (ortholog); FOUND IN extracellular space (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: R-spondin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl693,665,121 - 93,685,197 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1693,664,839 - 93,690,328 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RSPO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl693,665,121 - 93,685,197 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1693,664,839 - 93,690,328 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RSPO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38137,611,350 - 37,634,892 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl137,611,350 - 37,634,892 (-)EnsemblGRCh38hg38GRCh38
GRCh37138,076,951 - 38,100,564 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36137,849,538 - 37,873,078 (-)NCBINCBI36Build 36hg18NCBI36
Celera136,354,952 - 36,378,499 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef136,194,247 - 36,217,890 (-)NCBIHuRef
CHM1_1138,193,128 - 38,216,770 (-)NCBICHM1_1
T2T-CHM13v2.0137,476,097 - 37,499,638 (-)NCBIT2T-CHM13v2.0
Rspo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394124,880,197 - 124,902,895 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4124,880,223 - 124,902,892 (+)EnsemblGRCm39 Ensembl
GRCm384124,986,401 - 125,009,102 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4124,986,430 - 125,009,099 (+)EnsemblGRCm38mm10GRCm38
MGSCv374124,663,674 - 124,686,343 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364124,488,734 - 124,511,403 (+)NCBIMGSCv36mm8
Celera4123,309,280 - 123,331,929 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.96NCBI
Rspo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85142,536,162 - 142,557,611 (+)NCBIGRCr8
mRatBN7.25137,251,629 - 137,273,273 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5137,251,659 - 137,272,933 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5139,955,621 - 139,976,971 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05141,725,633 - 141,746,983 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05141,732,808 - 141,754,160 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05142,986,526 - 143,007,847 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5142,986,526 - 143,007,831 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05146,755,088 - 146,776,423 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45144,332,302 - 144,353,646 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5135,769,647 - 135,791,192 (+)NCBICelera
Cytogenetic Map5q36NCBI
Rspo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545215,415,932 - 15,435,656 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545215,415,417 - 15,435,616 (-)NCBIChiLan1.0ChiLan1.0
RSPO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21189,204,370 - 189,227,895 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11188,333,438 - 188,356,126 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,885,176 - 36,907,821 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1138,233,693 - 38,256,903 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl138,231,764 - 38,256,903 (-)Ensemblpanpan1.1panPan2
RSPO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1154,857,887 - 4,876,077 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl154,856,853 - 4,876,800 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha155,109,926 - 5,122,478 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0154,992,103 - 5,010,264 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl154,992,117 - 5,010,264 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1154,856,312 - 4,868,879 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0154,922,700 - 4,935,264 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0154,939,342 - 4,951,919 (+)NCBIUU_Cfam_GSD_1.0
Rspo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505854,002,026 - 54,021,671 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647419,827,669 - 19,842,726 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647419,826,808 - 19,846,453 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RSPO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12095,232,114 - 95,255,160 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2095,237,071 - 95,255,932 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603321,556,202 - 21,575,925 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rspo1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476420,341,756 - 20,359,279 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476420,342,629 - 20,363,498 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RSPO1
217 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system reproductive system
High
Medium
Low 2 2
Below cutoff 6 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000045554   ⟹   ENSSSCP00000047627
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl693,665,138 - 93,685,133 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000072439   ⟹   ENSSSCP00000061729
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl693,665,121 - 93,685,133 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000076678   ⟹   ENSSSCP00000067693
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl693,665,138 - 93,685,197 (-)Ensembl
RefSeq Acc Id: XM_021095970   ⟹   XP_020951629
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1693,664,839 - 93,690,328 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020951629   ⟸   XM_021095970
- UniProtKB: A0A287AU43 (UniProtKB/TrEMBL),   A0A4X1VVV1 (UniProtKB/TrEMBL),   A0A5G2RAR1 (UniProtKB/TrEMBL),   A0A8D1CPF7 (UniProtKB/TrEMBL),   A0A8D0WV90 (UniProtKB/TrEMBL),   A0A8D1TU96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000047627   ⟸   ENSSSCT00000045554
RefSeq Acc Id: ENSSSCP00000067693   ⟸   ENSSSCT00000076678
RefSeq Acc Id: ENSSSCP00000061729   ⟸   ENSSSCT00000072439
Protein Domains
R-spondin Fu-CRD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032240 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005023938 UniProtKB/TrEMBL
  ENSSSCG00015003866 UniProtKB/TrEMBL
  ENSSSCG00025028319 UniProtKB/TrEMBL
  ENSSSCG00030039481 UniProtKB/TrEMBL
  ENSSSCG00035021193 UniProtKB/TrEMBL
  ENSSSCG00040013172 UniProtKB/TrEMBL
  ENSSSCG00045004054 UniProtKB/TrEMBL
  ENSSSCG00050060287 UniProtKB/TrEMBL
  ENSSSCG00055002797 UniProtKB/TrEMBL
  ENSSSCG00060075250 UniProtKB/TrEMBL
  ENSSSCG00065001582 UniProtKB/TrEMBL
  ENSSSCG00070027058 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000045554 ENTREZGENE
  ENSSSCT00000045554.3 UniProtKB/TrEMBL
  ENSSSCT00000072439.2 UniProtKB/TrEMBL
  ENSSSCT00000076678.1 UniProtKB/TrEMBL
  ENSSSCT00005037950.1 UniProtKB/TrEMBL
  ENSSSCT00005037986.1 UniProtKB/TrEMBL
  ENSSSCT00005038010.1 UniProtKB/TrEMBL
  ENSSSCT00015005115.1 UniProtKB/TrEMBL
  ENSSSCT00015005126.1 UniProtKB/TrEMBL
  ENSSSCT00015005133.1 UniProtKB/TrEMBL
  ENSSSCT00025038456.1 UniProtKB/TrEMBL
  ENSSSCT00025038513.1 UniProtKB/TrEMBL
  ENSSSCT00025038573.1 UniProtKB/TrEMBL
  ENSSSCT00030054973.1 UniProtKB/TrEMBL
  ENSSSCT00030054994.1 UniProtKB/TrEMBL
  ENSSSCT00030055014.1 UniProtKB/TrEMBL
  ENSSSCT00035027621.1 UniProtKB/TrEMBL
  ENSSSCT00035027624.1 UniProtKB/TrEMBL
  ENSSSCT00035027627.1 UniProtKB/TrEMBL
  ENSSSCT00040017518.1 UniProtKB/TrEMBL
  ENSSSCT00040017539.1 UniProtKB/TrEMBL
  ENSSSCT00040017550.1 UniProtKB/TrEMBL
  ENSSSCT00045006734.1 UniProtKB/TrEMBL
  ENSSSCT00045006739.1 UniProtKB/TrEMBL
  ENSSSCT00045006741.1 UniProtKB/TrEMBL
  ENSSSCT00050082147.1 UniProtKB/TrEMBL
  ENSSSCT00050082151.1 UniProtKB/TrEMBL
  ENSSSCT00050082152.1 UniProtKB/TrEMBL
  ENSSSCT00055005364.1 UniProtKB/TrEMBL
  ENSSSCT00055005380.1 UniProtKB/TrEMBL
  ENSSSCT00055005386.1 UniProtKB/TrEMBL
  ENSSSCT00060103069.1 UniProtKB/TrEMBL
  ENSSSCT00060103156.1 UniProtKB/TrEMBL
  ENSSSCT00060103173.1 UniProtKB/TrEMBL
  ENSSSCT00065001964.1 UniProtKB/TrEMBL
  ENSSSCT00065001969.1 UniProtKB/TrEMBL
  ENSSSCT00065001981.1 UniProtKB/TrEMBL
  ENSSSCT00070054259.1 UniProtKB/TrEMBL
  ENSSSCT00070054260.1 UniProtKB/TrEMBL
  ENSSSCT00070054261.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.100.10 UniProtKB/TrEMBL
InterPro Furin_repeat UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  Rspo_Fu-CRD_dom UniProtKB/TrEMBL
  TSP1_rpt UniProtKB/TrEMBL
  TSP1_rpt_sf UniProtKB/TrEMBL
NCBI Gene RSPO1 ENTREZGENE
PANTHER NEUROHYPOPHYSIAL HORMONES, N-TERMINAL DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR46987:SF5 UniProtKB/TrEMBL
Pfam Furin-like_2 UniProtKB/TrEMBL
PROSITE TSP1 UniProtKB/TrEMBL
SMART SM00261 UniProtKB/TrEMBL
  TSP1 UniProtKB/TrEMBL
Superfamily-SCOP SSF57184 UniProtKB/TrEMBL
  SSF82895 UniProtKB/TrEMBL
UniProt A0A287AU43 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VVG2_PIG UniProtKB/TrEMBL
  A0A4X1VVV1 ENTREZGENE
  A0A4X1VXJ5_PIG UniProtKB/TrEMBL
  A0A5G2RAR1 ENTREZGENE
  A0A8D0RF72_PIG UniProtKB/TrEMBL
  A0A8D0WV90 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CPF7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TU96 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1VVV1 UniProtKB/TrEMBL
  A0A5G2QCA8 UniProtKB/TrEMBL
  A0A5G2RAR1 UniProtKB/TrEMBL
VGNC ID VGNC:92483 ENTREZGENE