ZNF22 (zinc finger protein 22) - Rat Genome Database

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Gene: ZNF22 (zinc finger protein 22) Sus scrofa
Analyze
Symbol: ZNF22
Name: zinc finger protein 22
RGD ID: 14177573
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (inferred); signal transduction (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1491,085,561 - 91,094,406 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11491,092,440 - 91,096,888 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21499,555,640 - 99,560,085 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
ZNF22
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1491,085,561 - 91,094,406 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11491,092,440 - 91,096,888 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21499,555,640 - 99,560,085 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381045,000,923 - 45,005,326 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1045,000,923 - 45,005,326 (+)EnsemblGRCh38hg38GRCh38
GRCh371045,496,371 - 45,500,774 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361044,815,928 - 44,820,780 (+)NCBINCBI36Build 36hg18NCBI36
Build 341044,815,927 - 44,820,779NCBI
Celera1041,499,447 - 41,503,956 (+)NCBICelera
Cytogenetic Map10q11.21NCBI
HuRef1042,021,639 - 42,026,148 (+)NCBIHuRef
CHM1_11045,535,250 - 45,539,759 (+)NCBICHM1_1
T2T-CHM13v2.01045,881,879 - 45,886,287 (+)NCBIT2T-CHM13v2.0
Zfp422
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396116,600,977 - 116,605,960 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6116,600,977 - 116,605,960 (-)EnsemblGRCm39 Ensembl
GRCm386116,624,016 - 116,628,999 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6116,624,016 - 116,628,999 (-)EnsemblGRCm38mm10GRCm38
MGSCv376116,574,034 - 116,578,995 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366116,589,635 - 116,594,596 (-)NCBIMGSCv36mm8
Celera6118,464,009 - 118,468,970 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.83NCBI
Zfp422
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84151,558,254 - 151,565,730 (-)NCBIGRCr8
mRatBN7.24149,885,805 - 149,893,287 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4149,885,600 - 149,893,257 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4156,127,719 - 156,131,903 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04151,911,761 - 151,915,945 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04150,534,653 - 150,538,837 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04148,757,362 - 148,761,594 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4148,757,363 - 148,761,547 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04214,696,097 - 214,703,529 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44152,975,181 - 152,979,366 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14153,220,022 - 153,222,083 (-)NCBI
Celera4138,761,375 - 138,765,560 (-)NCBICelera
Cytogenetic Map4q42NCBI
Znf22
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555462,308,714 - 2,313,334 (+)NCBIChiLan1.0ChiLan1.0
ZNF22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2857,732,409 - 57,740,037 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11057,740,749 - 57,745,366 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01041,995,117 - 41,999,954 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11045,174,724 - 45,179,566 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1045,177,605 - 45,178,279 (+)Ensemblpanpan1.1panPan2
ZNF22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1282,442,533 - 2,446,900 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl282,443,817 - 2,444,494 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha282,677,916 - 2,682,377 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0282,621,396 - 2,625,769 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl282,616,873 - 2,625,770 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1282,419,957 - 2,424,336 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0282,457,201 - 2,461,679 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0282,588,391 - 2,592,850 (-)NCBIUU_Cfam_GSD_1.0
Znf22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721382,015,950 - 82,020,323 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366174,763,617 - 4,767,974 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366174,763,374 - 4,768,035 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1940,625,251 - 40,630,492 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl940,628,570 - 40,629,244 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605645,773,918 - 45,779,096 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf22
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249663,088 - 18,549 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZNF22
60 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000045694   ⟹   ENSSSCP00000050468
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1491,085,561 - 91,094,406 (-)Ensembl
RefSeq Acc Id: XM_003483520   ⟹   XP_003483568
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11491,092,440 - 91,096,888 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003483568   ⟸   XM_003483520
- UniProtKB: A0A287B2Z6 (UniProtKB/TrEMBL),   A0A4X1V7J3 (UniProtKB/TrEMBL),   A0A480ZF74 (UniProtKB/TrEMBL),   A0A8D1J409 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000050468   ⟸   ENSSSCT00000045694
Protein Domains
C2H2-type   Ras-associating


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000042874 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015041172 UniProtKB/TrEMBL
  ENSSSCG00025070949 UniProtKB/TrEMBL
  ENSSSCG00030026192 UniProtKB/TrEMBL
  ENSSSCG00035048193 UniProtKB/TrEMBL
  ENSSSCG00040014863 UniProtKB/TrEMBL
  ENSSSCG00045036854 UniProtKB/TrEMBL
  ENSSSCG00050009103 UniProtKB/TrEMBL
  ENSSSCG00055030229 UniProtKB/TrEMBL
  ENSSSCG00060069734 UniProtKB/TrEMBL
  ENSSSCG00065016516 UniProtKB/TrEMBL
  ENSSSCG00070023094 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000045694 ENTREZGENE
  ENSSSCT00000045694.3 UniProtKB/TrEMBL
  ENSSSCT00015054882.1 UniProtKB/TrEMBL
  ENSSSCT00025097407.1 UniProtKB/TrEMBL
  ENSSSCT00030036572.1 UniProtKB/TrEMBL
  ENSSSCT00035064201.1 UniProtKB/TrEMBL
  ENSSSCT00035064206.1 UniProtKB/TrEMBL
  ENSSSCT00040019946.1 UniProtKB/TrEMBL
  ENSSSCT00045063482.1 UniProtKB/TrEMBL
  ENSSSCT00050012289.1 UniProtKB/TrEMBL
  ENSSSCT00055060139.1 UniProtKB/TrEMBL
  ENSSSCT00060095198.1 UniProtKB/TrEMBL
  ENSSSCT00065021913.1 UniProtKB/TrEMBL
  ENSSSCT00070046015.1 UniProtKB/TrEMBL
  ENSSSCT00070046020.1 UniProtKB/TrEMBL
  ENSSSCT00070046043.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro C-RASSF UniProtKB/TrEMBL
  RA_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report ssc:100739398 UniProtKB/TrEMBL
NCBI Gene ZNF22 ENTREZGENE
PANTHER PTHR22738 UniProtKB/TrEMBL
  PTHR22738:SF4 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 672 UniProtKB/TrEMBL
Pfam PF00788 UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE PS50200 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART SM00314 UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A287B2Z6 ENTREZGENE, UniProtKB/TrEMBL
  A0A480ZF74 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V7J3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VB45_PIG UniProtKB/TrEMBL
  A0A8D0I942_PIG UniProtKB/TrEMBL
  A0A8D1J409 ENTREZGENE, UniProtKB/TrEMBL