NACA (nascent polypeptide associated complex subunit alpha) - Rat Genome Database

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Gene: NACA (nascent polypeptide associated complex subunit alpha) Sus scrofa
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Symbol: NACA
Name: nascent polypeptide associated complex subunit alpha
RGD ID: 14177230
Description: ENCODES a protein that exhibits TBP-class protein binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN cardiac ventricle development (ortholog); heart trabecula morphogenesis (ortholog); myoblast migration (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nascent polypeptide-associated complex alpha subunit; nascent polypeptide-associated complex subunit alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1522,044,569 - 22,058,096 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2523,718,960 - 23,751,979 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
NACA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1522,044,569 - 22,058,096 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2523,718,960 - 23,751,979 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NACA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1256,712,305 - 56,731,628 (-)EnsemblGRCh38hg38GRCh38
GRCh381256,712,427 - 56,725,299 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371257,106,211 - 57,119,083 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,392,486 - 55,405,318 (-)NCBINCBI36hg18NCBI36
Build 341255,392,486 - 55,405,318NCBI
Celera1256,760,235 - 56,773,290 (-)NCBI
Cytogenetic Map12q13.3NCBI
HuRef1254,144,919 - 54,157,979 (-)NCBIHuRef
CHM1_11257,074,331 - 57,086,908 (-)NCBICHM1_1
Naca
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,869,144 - 127,884,506 (+)NCBIGRCm39mm39
GRCm39 Ensembl10127,871,444 - 127,884,506 (+)Ensembl
GRCm3810128,035,346 - 128,048,637 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,035,575 - 128,048,637 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710127,472,402 - 127,485,693 (+)NCBIGRCm37mm9NCBIm37
MGSCv3610127,438,522 - 127,451,582 (+)NCBImm8
Celera10130,429,964 - 130,443,255 (+)NCBICelera
Cytogenetic Map10D3NCBI
Naca
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27468,862 - 481,992 (+)NCBI
Rnor_6.0 Ensembl72,458,264 - 2,470,674 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.072,458,283 - 2,470,674 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.072,437,474 - 2,450,445 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.471,330,795 - 1,342,502 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.171,330,206 - 1,342,498 (+)NCBI
Celera7349,093 - 361,347 (+)NCBICelera
Cytogenetic Map7q11NCBI
Naca
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554584,248,599 - 4,265,584 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554584,251,679 - 4,265,430 (-)NCBIChiLan1.0ChiLan1.0
NACA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11232,434,366 - 32,447,510 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1232,434,366 - 32,447,510 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01232,180,823 - 32,195,645 (+)NCBIMhudiblu_PPA_v0panPan3
NACA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110938,682 - 949,103 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10938,683 - 949,032 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha101,001,345 - 1,013,850 (-)NCBI
ROS_Cfam_1.010947,647 - 960,206 (-)NCBI
UMICH_Zoey_3.110924,757 - 937,259 (-)NCBI
UNSW_CanFamBas_1.0101,166,677 - 1,179,175 (-)NCBI
UU_Cfam_GSD_1.0101,291,318 - 1,303,824 (-)NCBI
Naca
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,840,215 - 57,852,744 (+)NCBI
SpeTri2.0NW_0049366461,017,491 - 1,030,130 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103238541
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,655,199 - 52,670,143 (-)NCBI
Vero_WHO_p1.0NW_02366606317,172,014 - 17,172,754 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001929432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005663893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005663894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021091801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021091802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021091803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021091804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002343980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002343981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002343982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002343983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK237627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU468457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FP565365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01053476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_001929432   ⟹   XP_001929467
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1522,044,569 - 22,057,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005663893   ⟹   XP_005663950
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1522,044,569 - 22,057,895 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005663894   ⟹   XP_005663951
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1522,044,569 - 22,057,981 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021091801   ⟹   XP_020947460
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1522,044,569 - 22,057,897 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021091802   ⟹   XP_020947461
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1522,044,569 - 22,057,837 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021091803   ⟹   XP_020947462
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1522,044,569 - 22,057,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021091804   ⟹   XP_020947463
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1522,044,569 - 22,057,843 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002343980
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1522,044,569 - 22,057,986 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002343981
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1522,044,569 - 22,058,096 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002343982
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1522,044,569 - 22,057,840 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002343983
RefSeq Status:
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1522,044,569 - 22,054,577 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005663951   ⟸   XM_005663894
- Peptide Label: isoform X2
- UniProtKB: K7GNZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947460   ⟸   XM_021091801
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005663950   ⟸   XM_005663893
- Peptide Label: isoform X2
- UniProtKB: K7GNZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947463   ⟸   XM_021091804
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_001929467   ⟸   XM_001929432
- Peptide Label: isoform X2
- UniProtKB: K7GNZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947461   ⟸   XM_021091802
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020947462   ⟸   XM_021091803
- Peptide Label: isoform X1
- Sequence:
Protein Domains
NAC-A/B


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000020830 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070029315 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000029600 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000071705 UniProtKB/TrEMBL
  ENSSSCP00070050086 UniProtKB/TrEMBL
  ENSSSCP00070050089 UniProtKB/TrEMBL
  ENSSSCP00070050095 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000033645 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000084812 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070058867 UniProtKB/TrEMBL
  ENSSSCT00070058870 UniProtKB/TrEMBL
  ENSSSCT00070058876 UniProtKB/TrEMBL
Gene3D-CATH 2.20.70.30 UniProtKB/TrEMBL
InterPro EGD2/NACA UniProtKB/TrEMBL
  NAC-like_UBA UniProtKB/TrEMBL
  NAC_A/B_dom_sf UniProtKB/TrEMBL
  Nas_poly-pep-assoc_cplx_dom UniProtKB/TrEMBL
KEGG Report ssc:100154750 UniProtKB/TrEMBL
NCBI Gene NACA ENTREZGENE
PANTHER PTHR21713 UniProtKB/TrEMBL
Pfam HYPK_UBA UniProtKB/TrEMBL
  NAC UniProtKB/TrEMBL
PIRSF NAC_alpha UniProtKB/TrEMBL
PROSITE NAC_AB UniProtKB/TrEMBL
SMART NAC UniProtKB/TrEMBL
UniProt A0A480TF45_PIG UniProtKB/TrEMBL
  A0A4X1W1L8_PIG UniProtKB/TrEMBL
  A0A4X1W6K6_PIG UniProtKB/TrEMBL
  A0A4X1W7R4_PIG UniProtKB/TrEMBL
  A0A5G2R5U8_PIG UniProtKB/TrEMBL
  K7GNZ3 ENTREZGENE, UniProtKB/TrEMBL