ABCF1 (ATP binding cassette subfamily F member 1) - Rat Genome Database

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Gene: ABCF1 (ATP binding cassette subfamily F member 1) Sus scrofa
Analyze
Symbol: ABCF1
Name: ATP binding cassette subfamily F member 1
RGD ID: 14176169
Description: ENCODES a protein that exhibits ATP binding (ortholog); ribosome binding (ortholog); translation activator activity (ortholog); INVOLVED IN positive regulation of translation (ortholog); ribosome biogenesis (ortholog); translational initiation (ortholog); ASSOCIATED WITH allergic disease (ortholog); Disease Progression (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nuclear envelope (ortholog); nucleoplasm (ortholog); INTERACTS WITH zearalenone
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATP-binding cassette sub-family F member 1; ATP-binding cassette, sub-family F (GCN20), member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,126,283 - 23,145,006 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,126,255 - 23,144,030 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2726,795,857 - 26,813,632 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
zearalenone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISS)
cytosol  (IEA)
nuclear envelope  (IEA,ISS)
nucleoplasm  (IEA,ISS)
nucleus  (IEA)
ribosome  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:14673549   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ABCF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,126,283 - 23,145,006 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,126,255 - 23,144,030 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2726,795,857 - 26,813,632 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABCF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,571,442 - 30,591,522 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl630,571,393 - 30,597,179 (+)EnsemblGRCh38hg38GRCh38
GRCh37630,539,219 - 30,559,299 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,647,149 - 30,667,288 (+)NCBINCBI36Build 36hg18NCBI36
Build 34630,647,148 - 30,667,067NCBI
Celera632,137,288 - 32,157,421 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,339,240 - 30,359,384 (+)NCBIHuRef
CHM1_1630,541,266 - 30,561,417 (+)NCBICHM1_1
T2T-CHM13v2.0630,435,621 - 30,455,699 (+)NCBIT2T-CHM13v2.0
Abcf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391736,267,711 - 36,280,642 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1736,267,711 - 36,280,653 (-)EnsemblGRCm39 Ensembl
GRCm381735,956,819 - 35,969,750 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,956,819 - 35,969,761 (-)EnsemblGRCm38mm10GRCm38
MGSCv371736,093,764 - 36,106,695 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,564,872 - 35,577,803 (-)NCBIMGSCv36mm8
Celera1739,470,344 - 39,483,322 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.8NCBI
Abcf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8202,807,315 - 2,820,240 (+)NCBIGRCr8
mRatBN7.2202,802,519 - 2,815,433 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl202,802,488 - 2,815,433 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx202,854,007 - 2,867,015 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0202,858,976 - 2,871,984 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0202,885,513 - 2,898,407 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,309,914 - 3,322,828 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,309,899 - 3,322,825 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,407,475 - 5,420,356 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4202,953,604 - 2,962,140 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1202,953,831 - 2,962,361 (+)NCBI
Celera20228,398 - 241,279 (+)NCBICelera
Cytogenetic Map20p12NCBI
Abcf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583600,398 - 606,820 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955583600,381 - 607,211 (+)NCBIChiLan1.0ChiLan1.0
ABCF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,129,737 - 45,149,503 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,092,823 - 41,112,558 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,314,216 - 30,333,912 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,184,720 - 31,203,789 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,184,831 - 31,203,059 (+)Ensemblpanpan1.1panPan2
ABCF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112396,947 - 410,951 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12401,118 - 411,179 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12527,719 - 549,348 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.012533,984 - 555,482 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl12540,881 - 555,480 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112390,728 - 412,380 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012460,059 - 481,701 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012529,843 - 551,482 (+)NCBIUU_Cfam_GSD_1.0
Abcf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494633,882,849 - 33,899,757 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936837248,133 - 265,016 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103221832
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,866,152 - 41,885,673 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1741,866,062 - 41,884,972 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604430,235,086 - 30,259,243 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abcf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475425,098,182 - 25,110,092 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475425,097,202 - 25,110,164 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ABCF1
531 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 3 1 5 2 14 1 2 3
Low 2 1 2 9 1 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000035204   ⟹   ENSSSCP00000028530
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl723,126,283 - 23,143,992 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000093294   ⟹   ENSSSCP00000075583
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl723,126,304 - 23,145,006 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000094263   ⟹   ENSSSCP00000074823
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl723,126,304 - 23,145,006 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000097825   ⟹   ENSSSCP00000077828
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl723,126,338 - 23,145,006 (+)Ensembl
RefSeq Acc Id: NM_001123069   ⟹   NP_001116541
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1723,126,338 - 23,143,436 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005653453   ⟹   XP_005653510
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1723,126,255 - 23,144,030 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005653454   ⟹   XP_005653511
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1723,126,255 - 23,144,030 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005653510   ⟸   XM_005653453
- Peptide Label: isoform X1
- UniProtKB: A0A480K1E2 (UniProtKB/TrEMBL),   A0A4X1VIA2 (UniProtKB/TrEMBL),   A0A4X1VID8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005653511   ⟸   XM_005653454
- Peptide Label: isoform X2
- UniProtKB: A0A480PQG3 (UniProtKB/TrEMBL),   A0A8D1ZGY4 (UniProtKB/TrEMBL),   A0A4X1VID8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001116541   ⟸   NM_001123069
- UniProtKB: Q767L0 (UniProtKB/Swiss-Prot),   A0A8D1VYM7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000028530   ⟸   ENSSSCT00000035204
RefSeq Acc Id: ENSSSCP00000074823   ⟸   ENSSSCT00000094263
RefSeq Acc Id: ENSSSCP00000075583   ⟸   ENSSSCT00000093294
RefSeq Acc Id: ENSSSCP00000077828   ⟸   ENSSSCT00000097825
Protein Domains
ABC transporter


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001346 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00005010641 UniProtKB/TrEMBL
  ENSSSCG00015034086 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00030061982 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00035064746 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00040071140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00045039380 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00055030656 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00060051947 UniProtKB/TrEMBL
  ENSSSCG00065061355 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00070024670 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000035204.4 UniProtKB/TrEMBL
  ENSSSCT00000093294 ENTREZGENE
  ENSSSCT00000093294.1 UniProtKB/Swiss-Prot
  ENSSSCT00000094263 ENTREZGENE
  ENSSSCT00000094263.1 UniProtKB/TrEMBL
  ENSSSCT00000097825 ENTREZGENE
  ENSSSCT00000097825.1 UniProtKB/TrEMBL
  ENSSSCT00005016479.1 UniProtKB/TrEMBL
  ENSSSCT00005016540.1 UniProtKB/TrEMBL
  ENSSSCT00015047389.1 UniProtKB/TrEMBL
  ENSSSCT00015047546.1 UniProtKB/TrEMBL
  ENSSSCT00015047707.1 UniProtKB/TrEMBL
  ENSSSCT00015047857.1 UniProtKB/Swiss-Prot
  ENSSSCT00030086813.1 UniProtKB/TrEMBL
  ENSSSCT00030086874.1 UniProtKB/TrEMBL
  ENSSSCT00030086951.1 UniProtKB/Swiss-Prot
  ENSSSCT00030086964.1 UniProtKB/TrEMBL
  ENSSSCT00030086992.1 UniProtKB/TrEMBL
  ENSSSCT00035087297.1 UniProtKB/TrEMBL
  ENSSSCT00035087363.1 UniProtKB/TrEMBL
  ENSSSCT00035087430.1 UniProtKB/Swiss-Prot
  ENSSSCT00035087454.1 UniProtKB/TrEMBL
  ENSSSCT00035087475.1 UniProtKB/TrEMBL
  ENSSSCT00040098084.1 UniProtKB/TrEMBL
  ENSSSCT00040098322.1 UniProtKB/TrEMBL
  ENSSSCT00040098572.1 UniProtKB/Swiss-Prot
  ENSSSCT00040098747.1 UniProtKB/TrEMBL
  ENSSSCT00040098900.1 UniProtKB/TrEMBL
  ENSSSCT00045068586.1 UniProtKB/TrEMBL
  ENSSSCT00045068599.1 UniProtKB/TrEMBL
  ENSSSCT00045068613.1 UniProtKB/Swiss-Prot
  ENSSSCT00045068622.1 UniProtKB/TrEMBL
  ENSSSCT00055061136.1 UniProtKB/Swiss-Prot
  ENSSSCT00055061141.1 UniProtKB/TrEMBL
  ENSSSCT00060070783.1 UniProtKB/TrEMBL
  ENSSSCT00065084401.1 UniProtKB/TrEMBL
  ENSSSCT00065084405.1 UniProtKB/TrEMBL
  ENSSSCT00065084410.1 UniProtKB/TrEMBL
  ENSSSCT00065084428.1 UniProtKB/Swiss-Prot
  ENSSSCT00070049243.1 UniProtKB/TrEMBL
  ENSSSCT00070049245.1 UniProtKB/TrEMBL
  ENSSSCT00070049248.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100144452 UniProtKB/Swiss-Prot
NCBI Gene ABCF1 ENTREZGENE
PANTHER ATP BINDING CASSETTE SUBFAMILY F MEMBER 1 UniProtKB/TrEMBL
  ATP-BINDING CASSETTE SUB-FAMILY F MEMBER 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATP-BINDING TRANSPORT PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ABC_tran UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ABC_TRANSPORTER_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A480K1E2 ENTREZGENE, UniProtKB/TrEMBL
  A0A480PQG3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VIA2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VID8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0I9I0_PIG UniProtKB/TrEMBL
  A0A8D0ICA9_PIG UniProtKB/TrEMBL
  A0A8D1B090_PIG UniProtKB/TrEMBL
  A0A8D1D183_PIG UniProtKB/TrEMBL
  A0A8D1D1L7_PIG UniProtKB/TrEMBL
  A0A8D1G358_PIG UniProtKB/TrEMBL
  A0A8D1VYM7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ZGY4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FHN9_PIG UniProtKB/TrEMBL
  ABCF1_PIG UniProtKB/Swiss-Prot
  K7GL02_PIG UniProtKB/TrEMBL
  Q767L0 ENTREZGENE
VGNC ID VGNC:84966 ENTREZGENE