C1QBP (complement C1q binding protein) - Rat Genome Database

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Gene: C1QBP (complement C1q binding protein) Sus scrofa
Analyze
Symbol: C1QBP
Name: complement C1q binding protein
RGD ID: 14175467
Description: ENCODES a protein that exhibits adrenergic receptor binding (ortholog); complement component C1q complex binding (ortholog); mitochondrial ribosome binding (ortholog); INVOLVED IN positive regulation of mitochondrial translation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); combined oxidative phosphorylation deficiency 33 (ortholog); developmental and epileptic encephalopathy 25 (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog); GABA-ergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cDNA; complement component 1 Q subcomponent-binding protein, mitochondrial; gC1qR; mitochondrial complement component 1 Q subcomponent-binding protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,548,415 - 51,555,689 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,548,361 - 51,553,076 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:27063333   PMID:30032202  


Genomics

Comparative Map Data
C1QBP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1251,548,415 - 51,555,689 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11251,548,361 - 51,553,076 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
C1QBP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38175,432,777 - 5,439,155 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl175,432,777 - 5,448,830 (-)EnsemblGRCh38hg38GRCh38
GRCh37175,336,097 - 5,342,475 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36175,276,823 - 5,283,195 (-)NCBINCBI36Build 36hg18NCBI36
Build 34175,276,822 - 5,283,195NCBI
Celera175,352,471 - 5,358,843 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef175,226,626 - 5,232,998 (-)NCBIHuRef
CHM1_1175,345,744 - 5,352,160 (-)NCBICHM1_1
T2T-CHM13v2.0175,326,513 - 5,332,892 (-)NCBIT2T-CHM13v2.0
C1qbp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,868,672 - 70,873,852 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,868,662 - 70,873,852 (-)EnsemblGRCm39 Ensembl
GRCm381170,977,846 - 70,983,026 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,977,836 - 70,983,026 (-)EnsemblGRCm38mm10GRCm38
MGSCv371170,791,348 - 70,796,528 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361170,794,047 - 70,799,164 (-)NCBIMGSCv36mm8
Celera1178,532,249 - 78,537,440 (-)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1143.21NCBI
C1qbp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81056,198,534 - 56,203,185 (-)NCBIGRCr8
mRatBN7.21055,699,954 - 55,704,605 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1055,699,954 - 55,704,649 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1060,379,671 - 60,384,322 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01059,868,190 - 59,872,841 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01055,367,280 - 55,371,931 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01057,613,876 - 57,618,527 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1057,613,879 - 57,618,527 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01057,359,088 - 57,363,739 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,881,783 - 57,886,434 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11057,895,408 - 57,900,057 (-)NCBI
Celera1054,845,644 - 54,850,295 (-)NCBICelera
Cytogenetic Map10q24NCBI
C1qbp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,788,277 - 10,792,449 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,788,142 - 10,792,272 (-)NCBIChiLan1.0ChiLan1.0
C1QBP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21913,043,308 - 13,054,205 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11715,011,539 - 15,017,922 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0175,481,114 - 5,487,482 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1175,473,239 - 5,479,735 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl175,473,239 - 5,479,735 (-)Ensemblpanpan1.1panPan2
C1QBP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,354,665 - 31,359,672 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,354,723 - 31,359,469 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,492,700 - 31,497,711 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0531,459,329 - 31,464,338 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1531,424,879 - 31,429,890 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0531,383,770 - 31,388,780 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,560,209 - 31,565,218 (+)NCBIUU_Cfam_GSD_1.0
C1qbp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,524,367 - 53,529,566 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366772,371,418 - 2,376,608 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366772,371,400 - 2,376,608 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1QBP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,843,202 - 4,850,639 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,843,438 - 4,850,600 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605916,737,956 - 16,745,399 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
C1qbp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247869,239,177 - 9,243,961 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247869,239,119 - 9,243,617 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C1QBP
96 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 3 4 3 5 2 16 2 2 3
Below cutoff 3 7

Sequence


RefSeq Acc Id: ENSSSCT00000044665   ⟹   ENSSSCP00000035175
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1251,548,415 - 51,553,071 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000088595   ⟹   ENSSSCP00000065018
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1251,548,415 - 51,555,689 (+)Ensembl
RefSeq Acc Id: XM_021067745   ⟹   XP_020923404
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11251,548,361 - 51,553,076 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020923404   ⟸   XM_021067745
- UniProtKB: A0A0D5BWD2 (UniProtKB/TrEMBL),   A0A8D1EJF5 (UniProtKB/TrEMBL),   A0A8D1MZU6 (UniProtKB/TrEMBL),   A0A8D1WTT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000065018   ⟸   ENSSSCT00000088595
RefSeq Acc Id: ENSSSCP00000035175   ⟸   ENSSSCT00000044665


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035048 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025053953 UniProtKB/TrEMBL
  ENSSSCG00035055286 UniProtKB/TrEMBL
  ENSSSCG00040041957 UniProtKB/TrEMBL
  ENSSSCG00045001328 UniProtKB/TrEMBL
  ENSSSCG00050051205 UniProtKB/TrEMBL
  ENSSSCG00055013884 UniProtKB/TrEMBL
  ENSSSCG00060071844 UniProtKB/TrEMBL
  ENSSSCG00065017379 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000044665.2 UniProtKB/TrEMBL
  ENSSSCT00000088595 ENTREZGENE
  ENSSSCT00000088595.1 UniProtKB/TrEMBL
  ENSSSCT00025073812.1 UniProtKB/TrEMBL
  ENSSSCT00035073737.1 UniProtKB/TrEMBL
  ENSSSCT00040056149.1 UniProtKB/TrEMBL
  ENSSSCT00045002104.1 UniProtKB/TrEMBL
  ENSSSCT00050069727.1 UniProtKB/TrEMBL
  ENSSSCT00055027372.1 UniProtKB/TrEMBL
  ENSSSCT00060098127.1 UniProtKB/TrEMBL
  ENSSSCT00065023087.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.280.10 UniProtKB/TrEMBL
InterPro MAM33 UniProtKB/TrEMBL
  MAM33_sf UniProtKB/TrEMBL
NCBI Gene C1QBP ENTREZGENE
PANTHER COMPLEMENT COMPONENT 1 Q SUBCOMPONENT-BINDING PROTEIN, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR10826 UniProtKB/TrEMBL
Pfam MAM33 UniProtKB/TrEMBL
Superfamily-SCOP SSF54529 UniProtKB/TrEMBL
UniProt A0A0D5BWD2 ENTREZGENE, UniProtKB/TrEMBL
  A0A286ZUP1_PIG UniProtKB/TrEMBL
  A0A8D1EJF5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1MZU6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WTT6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:98976 ENTREZGENE