LOC110255363 (olfactory receptor 52W1) - Rat Genome Database

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Gene: LOC110255363 (olfactory receptor 52W1) Sus scrofa
Analyze
Symbol: LOC110255363 (Ensembl: OR52W1)
Name: olfactory receptor 52W1 (Ensembl:olfactory receptor family 52 subfamily W member 1)
RGD ID: 14173966
Description: ENCODES a protein that exhibits olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); signal transduction (inferred); ASSOCIATED WITH genetic disease (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl93,474,365 - 3,475,327 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.193,472,870 - 3,477,853 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC110255363
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl93,474,365 - 3,475,327 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.193,472,870 - 3,477,853 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
OR52W1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38116,199,224 - 6,200,186 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl116,199,224 - 6,200,186 (+)EnsemblGRCh38hg38GRCh38
GRCh37116,220,454 - 6,221,416 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36116,177,030 - 6,177,992 (+)NCBINCBI36Build 36hg18NCBI36
Build 34116,177,029 - 6,177,992NCBI
Celera116,339,538 - 6,340,500 (+)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef115,880,539 - 5,881,501 (+)NCBIHuRef
CHM1_1116,219,686 - 6,220,648 (+)NCBICHM1_1
T2T-CHM13v2.0116,257,677 - 6,258,639 (+)NCBIT2T-CHM13v2.0
Or52w1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397105,017,535 - 105,018,524 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7105,017,437 - 105,018,562 (+)EnsemblGRCm39 Ensembl
GRCm387105,368,328 - 105,369,317 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7105,368,230 - 105,369,355 (+)EnsemblGRCm38mm10GRCm38
MGSCv377112,516,842 - 112,517,831 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367105,242,149 - 105,243,138 (+)NCBIMGSCv36mm8
Celera7105,640,421 - 105,641,410 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map755.84NCBI
Or52w1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81169,127,607 - 169,128,596 (+)NCBIGRCr8
mRatBN7.21159,715,755 - 159,716,744 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1159,715,755 - 159,716,744 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1167,737,216 - 167,738,205 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01174,923,211 - 174,924,200 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01167,810,801 - 167,811,790 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01170,205,323 - 170,206,774 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1170,205,591 - 170,206,460 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01177,212,845 - 177,215,268 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1157,650,273 - 157,651,724 (+)NCBICelera
Cytogenetic Map1q32NCBI
LOC102015189
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541421,944,401 - 21,945,366 (+)NCBIChiLan1.0ChiLan1.0
LOC100991181
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v298,637,289 - 8,638,557 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1118,601,222 - 8,602,462 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0116,333,027 - 6,334,423 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1116,015,121 - 6,016,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl116,015,192 - 6,016,154 (+)Ensemblpanpan1.1panPan2
OR52W1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12129,534,037 - 29,538,002 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2129,536,182 - 29,537,144 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2129,238,354 - 29,239,316 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02130,360,431 - 30,364,297 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2130,362,477 - 30,363,439 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12129,683,723 - 29,684,684 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02129,849,487 - 29,850,449 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02130,044,118 - 30,045,080 (+)NCBIUU_Cfam_GSD_1.0
LOC101958838
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494756,403,882 - 56,409,678 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936842270,643 - 271,605 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936842270,366 - 271,825 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103241570
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1158,625,612 - 58,629,877 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl158,627,477 - 58,628,439 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038156,464,235 - 156,466,043 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101726356
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248177,682,847 - 7,683,818 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LOC110255363
170 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system hemolymphoid system reproductive system
High
Medium
Low
Below cutoff 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021062352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000043203   ⟹   ENSSSCP00000051426
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl93,474,365 - 3,475,327 (-)Ensembl
RefSeq Acc Id: XM_021062352   ⟹   XP_020918011
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.193,472,870 - 3,477,853 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020918011   ⟸   XM_021062352
- UniProtKB: A0A4X1SEG9 (UniProtKB/TrEMBL),   A0A287B563 (UniProtKB/TrEMBL),   A0A8D0TKV9 (UniProtKB/TrEMBL),   A0A8D1EFM5 (UniProtKB/TrEMBL),   A0A8D1NQR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000051426   ⟸   ENSSSCT00000043203
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035041 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015074146 UniProtKB/TrEMBL
  ENSSSCG00025076373 UniProtKB/TrEMBL
  ENSSSCG00030004380 UniProtKB/TrEMBL
  ENSSSCG00035058929 UniProtKB/TrEMBL
  ENSSSCG00040036933 UniProtKB/TrEMBL
  ENSSSCG00045026958 UniProtKB/TrEMBL
  ENSSSCG00050070787 UniProtKB/TrEMBL
  ENSSSCG00055021921 UniProtKB/TrEMBL
  ENSSSCG00060003874 UniProtKB/TrEMBL
  ENSSSCG00065008613 UniProtKB/TrEMBL
  ENSSSCG00070000330 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000043203 ENTREZGENE
  ENSSSCT00000043203.2 UniProtKB/TrEMBL
  ENSSSCT00015099752.1 UniProtKB/TrEMBL
  ENSSSCT00025105747.1 UniProtKB/TrEMBL
  ENSSSCT00030005806.1 UniProtKB/TrEMBL
  ENSSSCT00035078898.1 UniProtKB/TrEMBL
  ENSSSCT00040049435.1 UniProtKB/TrEMBL
  ENSSSCT00045045885.1 UniProtKB/TrEMBL
  ENSSSCT00050096538.1 UniProtKB/TrEMBL
  ENSSSCT00055043003.1 UniProtKB/TrEMBL
  ENSSSCT00060004809.1 UniProtKB/TrEMBL
  ENSSSCT00065011521.1 UniProtKB/TrEMBL
  ENSSSCT00070000590.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC110255363 ENTREZGENE
PANTHER OLFACTORY RECEPTOR 52W1 UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 56B1-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A287B563 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SEG9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0TKV9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EFM5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NQR5 ENTREZGENE, UniProtKB/TrEMBL