LOC100624891 (UDP-glucuronosyltransferase 2C1) - Rat Genome Database

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Gene: LOC100624891 (UDP-glucuronosyltransferase 2C1) Sus scrofa
Analyze
Symbol: LOC100624891
Name: UDP-glucuronosyltransferase 2C1
RGD ID: 14172305
Description: ENCODES a protein that exhibits glucuronosyltransferase activity (inferred); glycosyltransferase activity (inferred); transferase activity (inferred); INVOLVED IN steroid metabolic process (ortholog); xenobiotic glucuronidation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); nuclear outer membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1866,571,838 - 66,599,191 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2871,105,989 - 71,111,895 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
LOC100624891
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1866,571,838 - 66,599,191 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2871,105,989 - 71,111,895 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UGT2B28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38469,280,475 - 69,295,050 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl469,280,475 - 69,295,050 (+)EnsemblGRCh38hg38GRCh38
GRCh37470,146,193 - 70,160,768 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36470,180,806 - 70,195,357 (+)NCBINCBI36Build 36hg18NCBI36
Build 34470,326,976 - 70,341,527NCBI
Celera467,489,536 - 67,504,128 (+)NCBICelera
Cytogenetic Map4q13.2NCBI
HuRef465,944,695 - 65,959,246 (+)NCBIHuRef

Variants

.
Variants in LOC100624891
557 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system renal system
High
Medium 1
Low 2 1
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: XM_021101409   ⟹   XP_020957068
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1866,571,838 - 66,599,191 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020957068 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000063941.2
  ENSSSCP00000077100
  ENSSSCP00000077100.1
  ENSSSCP00000080480.1
Reference Protein Sequences
RefSeq Acc Id: XP_020957068   ⟸   XM_021101409
- UniProtKB: A0A8W4FE19 (UniProtKB/TrEMBL),   A0A480I073 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000054715 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000081961.2 UniProtKB/TrEMBL
  ENSSSCT00000098439 ENTREZGENE
  ENSSSCT00000098439.1 UniProtKB/TrEMBL
  ENSSSCT00000101449.1 UniProtKB/TrEMBL
Gene3D-CATH Glycogen Phosphorylase B UniProtKB/TrEMBL
InterPro UDP_glucos_trans UniProtKB/TrEMBL
  UDP_glycos_trans_CS UniProtKB/TrEMBL
NCBI Gene LOC100624891 ENTREZGENE
PANTHER EG:EG0003.4 PROTEIN-RELATED UniProtKB/TrEMBL
  UDP-GLUCURONOSYLTRANSFERASE 2A1-LIKE UniProtKB/TrEMBL
Pfam UDPGT UniProtKB/TrEMBL
PROSITE UDPGT UniProtKB/TrEMBL
Superfamily-SCOP UDP-Glycosyltransferase/glycogen phosphorylase UniProtKB/TrEMBL
UniProt A0A480I073 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QJ39_PIG UniProtKB/TrEMBL
  A0A8W4FE19 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FMA4_PIG UniProtKB/TrEMBL