TSPAN1 (tetraspanin 1) - Rat Genome Database
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Gene: TSPAN1 (tetraspanin 1) Sus scrofa
Analyze
Symbol: TSPAN1
Name: tetraspanin 1
RGD ID: 14171050
Description: INVOLVED IN protein stabilization (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2O (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: tetraspanin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6165,224,641 - 165,235,150 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16165,224,619 - 165,229,516 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26152,704,086 - 152,708,999 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:19664223  


Genomics

Comparative Map Data
TSPAN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6165,224,641 - 165,235,150 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16165,224,619 - 165,229,516 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26152,704,086 - 152,708,999 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSPAN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl146,175,073 - 46,185,962 (+)EnsemblGRCh38hg38GRCh38
GRCh38146,175,087 - 46,196,489 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37146,640,759 - 46,651,634 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37146,640,749 - 46,651,634 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36146,418,799 - 46,424,217 (+)NCBINCBI36hg18NCBI36
Build 34146,358,231 - 46,363,650NCBI
Celera144,928,039 - 44,938,924 (+)NCBI
Cytogenetic Map1p34.1NCBI
HuRef144,755,698 - 44,766,611 (+)NCBIHuRef
CHM1_1146,757,853 - 46,768,753 (+)NCBICHM1_1
Tspan1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394116,019,078 - 116,024,818 (-)NCBIGRCm39mm39
GRCm384116,161,881 - 116,167,621 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4116,161,869 - 116,167,601 (-)EnsemblGRCm38mm10GRCm38
MGSCv374115,834,486 - 115,840,203 (-)NCBIGRCm37mm9NCBIm37
MGSCv364115,659,813 - 115,665,530 (-)NCBImm8
Celera4114,900,039 - 114,905,756 (-)NCBICelera
Cytogenetic Map4D1NCBI
Tspan1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25129,646,139 - 129,659,383 (-)NCBI
Rnor_6.0 Ensembl5135,019,778 - 135,025,084 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05135,019,206 - 135,032,412 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05138,803,950 - 138,816,295 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45136,442,094 - 136,447,120 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15136,447,320 - 136,452,346 (-)NCBI
Celera5128,175,301 - 128,180,327 (-)NCBICelera
Cytogenetic Map5q35NCBI
Tspan1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546412,090,038 - 12,094,827 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546412,089,589 - 12,095,000 (-)NCBIChiLan1.0ChiLan1.0
TSPAN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1146,835,952 - 46,846,828 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl146,835,952 - 46,846,828 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0145,479,917 - 45,492,115 (+)NCBIMhudiblu_PPA_v0panPan3
TSPAN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1514,189,658 - 14,200,245 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11514,189,271 - 14,201,679 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tspan1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647427,221,691 - 27,227,226 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSPAN1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12086,599,933 - 86,613,244 (-)NCBI
ChlSab1.1 Ensembl2086,599,214 - 86,605,426 (-)Ensembl
Tspan1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249062,108,324 - 2,118,571 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium 8 1 2
Low 3 1 3 1 1
Below cutoff 1 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000004323   ⟹   ENSSSCP00000004223
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6165,224,641 - 165,235,150 (-)Ensembl
RefSeq Acc Id: NM_001243860   ⟹   NP_001230789
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16165,224,619 - 165,229,510 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005665450   ⟹   XP_005665507
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16165,224,619 - 165,229,516 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013999417   ⟹   XP_013854871
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16165,224,619 - 165,228,037 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021093296   ⟹   XP_020948955
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16165,224,619 - 165,229,367 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001230789 (Get FASTA)   NCBI Sequence Viewer  
  XP_005665507 (Get FASTA)   NCBI Sequence Viewer  
  XP_013854871 (Get FASTA)   NCBI Sequence Viewer  
  XP_020948955 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005665507   ⟸   XM_005665450
- Peptide Label: isoform X1
- UniProtKB: F1S3V5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001230789   ⟸   NM_001243860
- Sequence:
RefSeq Acc Id: XP_020948955   ⟸   XM_021093296
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013854871   ⟸   XM_013999417
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000004223   ⟸   ENSSSCT00000004323


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003908 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070029985 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000004223 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070051352 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000004323 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070060273 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/TrEMBL
InterPro Tetraspanin UniProtKB/TrEMBL
  Tetraspanin/Peripherin UniProtKB/TrEMBL
  Tetraspanin_CS UniProtKB/TrEMBL
  Tetraspanin_EC2_sf UniProtKB/TrEMBL
NCBI Gene TSPAN1 ENTREZGENE
Pfam Tetraspanin UniProtKB/TrEMBL
PIRSF Tetraspanin UniProtKB/TrEMBL
PRINTS TMFOUR UniProtKB/TrEMBL
PROSITE TM4_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48652 UniProtKB/TrEMBL
UniProt A0A4X1WBS8_PIG UniProtKB/TrEMBL
  F1S3V5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94498 ENTREZGENE