SULT1A3 (sulfotransferase family 1A member 3) - Rat Genome Database

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Gene: SULT1A3 (sulfotransferase family 1A member 3) Sus scrofa
Analyze
Symbol: SULT1A3
Name: sulfotransferase family 1A member 3
RGD ID: 14169895
Description: ENCODES a protein that exhibits flavonol 3-sulfotransferase activity (ortholog); nucleotide binding (ortholog); INVOLVED IN 3'-phosphoadenosine 5'-phosphosulfate metabolic process (ortholog); ethanol catabolic process (ortholog); phenol-containing compound metabolic process (ortholog); ASSOCIATED WITH Chromosome Aberrations (ortholog); genetic disease (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Phenol-sulfating phenol sulfotransferase 1; sulfotransferase 1A3; sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1; SULT1A1
RGD Orthologs
Human
Mouse
Bonobo
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,351,194 - 18,354,649 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,351,205 - 18,354,653 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15014971   PMID:16978187   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SULT1A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,351,194 - 18,354,649 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,351,205 - 18,354,653 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SULT1A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381628,591,943 - 28,597,050 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1628,591,943 - 28,597,050 (-)EnsemblGRCh38hg38GRCh38
GRCh371628,603,264 - 28,608,371 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361628,510,767 - 28,515,892 (-)NCBINCBI36Build 36hg18NCBI36
Build 341628,510,766 - 28,515,302NCBI
Cytogenetic Map16p11.2NCBI
HuRef1626,628,874 - 26,634,001 (-)NCBIHuRef
CHM1_11629,615,464 - 29,620,591 (-)NCBICHM1_1
T2T-CHM13v2.01628,798,642 - 28,803,752 (+)NCBIT2T-CHM13v2.0
Sult1a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,272,042 - 126,289,615 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,272,037 - 126,275,604 (-)EnsemblGRCm39 Ensembl
GRCm387126,672,865 - 126,690,443 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,672,865 - 126,676,432 (-)EnsemblGRCm38mm10GRCm38
MGSCv377133,816,384 - 133,819,871 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,464,018 - 126,467,505 (-)NCBIMGSCv36mm8
Celera7126,520,353 - 126,523,839 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.25NCBI
SULT1A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21831,196,744 - 31,203,819 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11634,888,450 - 34,897,267 (+)NCBINHGRI_mPanPan1
PanPan1.11629,068,659 - 29,086,259 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1629,068,659 - 29,077,360 (-)Ensemblpanpan1.1panPan2

Variants

.
Variants in SULT1A3
66 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 2 5 2 2 2 1
Low 7 2 3 22 1 2
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000026919   ⟹   ENSSSCP00000025098
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl318,351,194 - 18,354,649 (+)Ensembl
RefSeq Acc Id: NM_213765   ⟹   NP_998930
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1318,351,205 - 18,354,653 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_998930   ⟸   NM_213765
- UniProtKB: Q6Y0X5 (UniProtKB/TrEMBL),   A0A8D1F0A0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000025098   ⟸   ENSSSCT00000026919
Protein Domains
Sulfotransferase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021557 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030074267 UniProtKB/TrEMBL
  ENSSSCG00040052979 UniProtKB/TrEMBL
  ENSSSCG00055030633 UniProtKB/TrEMBL
  ENSSSCG00070014715 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000026919 ENTREZGENE
  ENSSSCT00000026919.4 UniProtKB/TrEMBL
  ENSSSCT00030104152.1 UniProtKB/TrEMBL
  ENSSSCT00030104157.1 UniProtKB/TrEMBL
  ENSSSCT00040071625.1 UniProtKB/TrEMBL
  ENSSSCT00040071792.1 UniProtKB/TrEMBL
  ENSSSCT00055061060.1 UniProtKB/TrEMBL
  ENSSSCT00055061076.1 UniProtKB/TrEMBL
  ENSSSCT00070028877.1 UniProtKB/TrEMBL
  ENSSSCT00070028879.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/TrEMBL
KEGG Report ssc:396640 UniProtKB/TrEMBL
NCBI Gene SULT1A3 ENTREZGENE
PANTHER SULFOTRANSFERASE 1A2 UniProtKB/TrEMBL
  SULFOTRANSFERASE SULT UniProtKB/TrEMBL
Pfam Sulfotransfer_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A4X1U2Z9_PIG UniProtKB/TrEMBL
  A0A8D1F0A0 ENTREZGENE, UniProtKB/TrEMBL
  I3LLX8_PIG UniProtKB/TrEMBL
  Q6Y0X5 ENTREZGENE, UniProtKB/TrEMBL