LOC100513889 (putative serine protease 47) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC100513889 (putative serine protease 47) Sus scrofa
Analyze
Symbol: LOC100513889
Name: putative serine protease 47
RGD ID: 14169314
Description: ENCODES a protein that exhibits serine-type endopeptidase activity (inferred); INVOLVED IN proteolysis (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.215155,310,999 - 155,323,777 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC100513889
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.215155,310,999 - 155,323,777 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PRSS40B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382130,536,570 - 130,549,928 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2130,539,839 - 130,549,085 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl2130,539,095 - 130,549,883 (-)EnsemblGRCh38hg38GRCh38
GRCh372131,294,143 - 131,307,501 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362131,013,138 - 131,023,951 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map2q21.1NCBI
HuRef2123,477,702 - 123,485,241 (+)NCBIHuRef
CHM1_12131,298,557 - 131,299,559 (-)NCBICHM1_1
T2T-CHM13v2.02130,970,470 - 130,983,812 (-)NCBIT2T-CHM13v2.0
Prss39
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39134,537,493 - 34,542,143 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl134,537,491 - 34,542,144 (+)EnsemblGRCm39 Ensembl
GRCm38134,498,412 - 34,503,062 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl134,498,410 - 34,503,063 (+)EnsemblGRCm38mm10GRCm38
MGSCv37134,555,275 - 34,559,907 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36134,442,976 - 34,447,608 (+)NCBIMGSCv36mm8
Celera134,261,738 - 34,266,371 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map113.29NCBI
Prss39
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8944,190,959 - 44,208,923 (+)NCBIGRCr8
mRatBN7.2936,695,037 - 36,713,004 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl936,707,328 - 36,713,001 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx945,204,252 - 45,209,927 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0950,335,428 - 50,341,103 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0948,617,339 - 48,623,014 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0940,999,027 - 41,012,607 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl941,006,800 - 41,013,965 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0940,669,817 - 40,683,065 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4933,241,164 - 33,247,320 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1933,242,577 - 33,248,731 (+)NCBI
Celera934,497,415 - 34,499,509 (+)NCBICelera
Cytogenetic Map9q21NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system nervous system
High
Medium
Low 1
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021081397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Protein Sequences
Protein RefSeqs XP_020937056 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00015038688.1
Protein Domains
Peptidase S1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00015070418 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00015094369.1 UniProtKB/TrEMBL
Gene3D-CATH Trypsin-like serine proteases UniProtKB/TrEMBL
InterPro Peptidase_S1_PA UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/TrEMBL
  Peptidase_S1A UniProtKB/TrEMBL
  Trypsin_dom UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
NCBI Gene LOC100513889 ENTREZGENE
PANTHER PROTEASE, SERINE 47 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEASE SERINE UniProtKB/TrEMBL
Pfam Trypsin UniProtKB/TrEMBL
PRINTS CHYMOTRYPSIN UniProtKB/TrEMBL
PROSITE TRYPSIN_DOM UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
SMART Tryp_SPc UniProtKB/TrEMBL
Superfamily-SCOP Trypsin-like serine proteases UniProtKB/TrEMBL
UniProt A0A8D0UAZ2 ENTREZGENE, UniProtKB/TrEMBL