TPRG1L (tumor protein p63 regulated 1 like) - Rat Genome Database

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Gene: TPRG1L (tumor protein p63 regulated 1 like) Sus scrofa
Analyze
Symbol: TPRG1L
Name: tumor protein p63 regulated 1 like
RGD ID: 14168178
Description: ENCODES a protein that exhibits calmodulin binding (inferred); identical protein binding (inferred); INVOLVED IN calmodulin dependent kinase signaling pathway (ortholog); negative regulation of synaptic transmission (ortholog); presynaptic modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); genetic disease (ortholog); FOUND IN calyx of Held (ortholog); extrinsic component of synaptic vesicle membrane (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: tumor protein p63-regulated gene 1-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl665,150,903 - 65,154,429 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1665,150,897 - 65,154,311 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2659,884,843 - 59,888,257 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12226715   PMID:14681463   PMID:17407547   PMID:30032202  


Genomics

Comparative Map Data
TPRG1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl665,150,903 - 65,154,429 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1665,150,897 - 65,154,311 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2659,884,843 - 59,888,257 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TPRG1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813,625,015 - 3,630,127 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13,625,015 - 3,630,127 (+)EnsemblGRCh38hg38GRCh38
GRCh3713,541,579 - 3,546,691 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613,531,416 - 3,536,555 (+)NCBINCBI36Build 36hg18NCBI36
Celera12,796,682 - 2,801,797 (+)NCBICelera
Cytogenetic Map1p36.32NCBI
HuRef12,837,972 - 2,843,088 (+)NCBIHuRef
CHM1_113,528,259 - 3,533,375 (+)NCBICHM1_1
T2T-CHM13v2.013,135,110 - 3,140,200 (+)NCBIT2T-CHM13v2.0
Tprg1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394154,241,942 - 154,246,763 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4154,241,942 - 154,245,123 (-)EnsemblGRCm39 Ensembl
GRCm384154,157,485 - 154,162,306 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4154,157,485 - 154,160,666 (-)EnsemblGRCm38mm10GRCm38
MGSCv374153,531,594 - 153,534,793 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364153,001,285 - 153,004,484 (-)NCBIMGSCv36mm8
Celera4156,441,404 - 156,444,603 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map483.88NCBI
Tprg1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85170,004,577 - 170,007,784 (-)NCBIGRCr8
mRatBN7.25164,722,151 - 164,725,358 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5164,710,285 - 164,725,425 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5167,426,253 - 167,429,460 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05169,247,671 - 169,250,878 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05169,210,188 - 169,213,395 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05171,456,299 - 171,459,488 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5171,456,302 - 171,459,488 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05174,938,793 - 174,941,982 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5162,933,950 - 162,937,177 (-)NCBICelera
Cytogenetic Map5q36NCBI
Tprg1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554868,007,842 - 8,013,910 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554868,007,678 - 8,013,996 (-)NCBIChiLan1.0ChiLan1.0
TPRG1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21224,678,694 - 224,683,810 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11223,323,817 - 223,328,909 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012,296,601 - 2,301,687 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113,420,294 - 3,425,007 (+)NCBIpanpan1.1PanPan1.1panPan2
TPRG1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1558,155,178 - 58,159,880 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl558,157,096 - 58,159,880 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha558,166,902 - 58,170,424 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0558,357,363 - 58,360,885 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl558,357,400 - 58,360,877 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1558,371,849 - 58,375,361 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0558,240,675 - 58,244,129 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0558,630,852 - 58,634,383 (+)NCBIUU_Cfam_GSD_1.0
Tprg1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505829,207,191 - 29,212,194 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936737253,752 - 258,767 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPRG1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120128,057,629 - 128,062,545 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20128,059,137 - 128,062,455 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605432,334,644 - 32,339,575 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tprg1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248186,850,486 - 6,858,136 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248186,850,479 - 6,857,979 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

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Variants in TPRG1L
57 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000003728   ⟹   ENSSSCP00000003642
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl665,150,903 - 65,154,429 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000071764   ⟹   ENSSSCP00000066717
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl665,150,946 - 65,154,140 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000072622   ⟹   ENSSSCP00000061497
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl665,150,946 - 65,154,140 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000075531   ⟹   ENSSSCP00000070181
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl665,150,903 - 65,154,047 (+)Ensembl
RefSeq Acc Id: NM_001244355   ⟹   NP_001231284
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1665,150,897 - 65,154,311 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001244356   ⟹   NP_001231285
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1665,150,897 - 65,154,311 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001231284   ⟸   NM_001244355
- Peptide Label: isoform 1
- UniProtKB: A0A4X1WA34 (UniProtKB/TrEMBL),   A0A5G2QRM0 (UniProtKB/TrEMBL),   A0A5G2QZ59 (UniProtKB/TrEMBL),   A0A8D0Z5Y3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231285   ⟸   NM_001244356
- Peptide Label: isoform 2
- UniProtKB: A0A8D1ICL6 (UniProtKB/TrEMBL),   F1RJA8 (UniProtKB/TrEMBL),   A0A5G2QZ59 (UniProtKB/TrEMBL),   A0A8D0Z5Y3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000070181   ⟸   ENSSSCT00000075531
RefSeq Acc Id: ENSSSCP00000003642   ⟸   ENSSSCT00000003728
RefSeq Acc Id: ENSSSCP00000066717   ⟸   ENSSSCT00000071764
RefSeq Acc Id: ENSSSCP00000061497   ⟸   ENSSSCT00000072622
Protein Domains
hSac2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003359 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025045001 UniProtKB/TrEMBL
  ENSSSCG00030010765 UniProtKB/TrEMBL
  ENSSSCG00035025646 UniProtKB/TrEMBL
  ENSSSCG00040015859 UniProtKB/TrEMBL
  ENSSSCG00045026589 UniProtKB/TrEMBL
  ENSSSCG00050012007 UniProtKB/TrEMBL
  ENSSSCG00055003240 UniProtKB/TrEMBL
  ENSSSCG00060050569 UniProtKB/TrEMBL
  ENSSSCG00065078590 UniProtKB/TrEMBL
  ENSSSCG00070029596 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003728 ENTREZGENE
  ENSSSCT00000003728.4 UniProtKB/TrEMBL
  ENSSSCT00000071764 ENTREZGENE
  ENSSSCT00000071764.2 UniProtKB/TrEMBL
  ENSSSCT00000072622.2 UniProtKB/TrEMBL
  ENSSSCT00000075531.1 UniProtKB/TrEMBL
  ENSSSCT00025061106.1 UniProtKB/TrEMBL
  ENSSSCT00025061231.1 UniProtKB/TrEMBL
  ENSSSCT00025061321.1 UniProtKB/TrEMBL
  ENSSSCT00025061439.1 UniProtKB/TrEMBL
  ENSSSCT00030014779.1 UniProtKB/TrEMBL
  ENSSSCT00030014789.1 UniProtKB/TrEMBL
  ENSSSCT00030014793.1 UniProtKB/TrEMBL
  ENSSSCT00030014799.1 UniProtKB/TrEMBL
  ENSSSCT00035033773.1 UniProtKB/TrEMBL
  ENSSSCT00035033776.1 UniProtKB/TrEMBL
  ENSSSCT00035033785.1 UniProtKB/TrEMBL
  ENSSSCT00035033788.1 UniProtKB/TrEMBL
  ENSSSCT00040021327.1 UniProtKB/TrEMBL
  ENSSSCT00040021356.1 UniProtKB/TrEMBL
  ENSSSCT00040021378.1 UniProtKB/TrEMBL
  ENSSSCT00040021385.1 UniProtKB/TrEMBL
  ENSSSCT00045045279.1 UniProtKB/TrEMBL
  ENSSSCT00045045338.1 UniProtKB/TrEMBL
  ENSSSCT00045045407.1 UniProtKB/TrEMBL
  ENSSSCT00045045483.1 UniProtKB/TrEMBL
  ENSSSCT00050016183.1 UniProtKB/TrEMBL
  ENSSSCT00050016187.1 UniProtKB/TrEMBL
  ENSSSCT00050016201.1 UniProtKB/TrEMBL
  ENSSSCT00050016211.1 UniProtKB/TrEMBL
  ENSSSCT00055006307.1 UniProtKB/TrEMBL
  ENSSSCT00055006322.1 UniProtKB/TrEMBL
  ENSSSCT00055006348.1 UniProtKB/TrEMBL
  ENSSSCT00055006354.1 UniProtKB/TrEMBL
  ENSSSCT00060068770.1 UniProtKB/TrEMBL
  ENSSSCT00060068780.1 UniProtKB/TrEMBL
  ENSSSCT00060068782.1 UniProtKB/TrEMBL
  ENSSSCT00060068793.1 UniProtKB/TrEMBL
  ENSSSCT00065109008.1 UniProtKB/TrEMBL
  ENSSSCT00065109016.1 UniProtKB/TrEMBL
  ENSSSCT00065109028.1 UniProtKB/TrEMBL
  ENSSSCT00065109031.1 UniProtKB/TrEMBL
  ENSSSCT00070059487.1 UniProtKB/TrEMBL
  ENSSSCT00070059488.1 UniProtKB/TrEMBL
InterPro hSac2 UniProtKB/TrEMBL
  Inositol_phosphatase UniProtKB/TrEMBL
  TPRG1-like UniProtKB/TrEMBL
KEGG Report ssc:100512473 UniProtKB/TrEMBL
NCBI Gene TPRG1L ENTREZGENE
PANTHER PTHR31108 UniProtKB/TrEMBL
  TUMOR PROTEIN P63-REGULATED GENE 1-LIKE PROTEIN UniProtKB/TrEMBL
Pfam hSac2 UniProtKB/TrEMBL
PROSITE HSAC2 UniProtKB/TrEMBL
UniProt A0A4X1W889_PIG UniProtKB/TrEMBL
  A0A4X1WA34 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QAR1_PIG UniProtKB/TrEMBL
  A0A5G2QRM0 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QZ59 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Z5Y3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ICL6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1LEI3_PIG UniProtKB/TrEMBL
  F1RJA8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94349 ENTREZGENE