CDC123 (cell division cycle 123) - Rat Genome Database

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Gene: CDC123 (cell division cycle 123) Sus scrofa
Analyze
Symbol: CDC123
Name: cell division cycle 123
RGD ID: 14167848
Description: ENCODES a protein that exhibits ATP binding (inferred); magnesium ion binding (inferred); metal ion binding (inferred); INVOLVED IN cell division (inferred); eukaryotic translation initiation factor 2 complex assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cell division cycle 123 homolog; cell division cycle protein 123 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1059,718,340 - 59,765,621 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11059,718,340 - 59,765,621 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21065,505,120 - 65,552,394 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:30032202  


Genomics

Comparative Map Data
CDC123
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1059,718,340 - 59,765,621 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11059,718,340 - 59,765,621 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21065,505,120 - 65,552,394 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDC123
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381012,196,188 - 12,250,589 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1012,195,965 - 12,250,589 (+)EnsemblGRCh38hg38GRCh38
GRCh371012,238,187 - 12,292,588 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361012,277,971 - 12,332,593 (+)NCBINCBI36Build 36hg18NCBI36
Build 341012,277,970 - 12,332,593NCBI
Celera1012,167,494 - 12,221,810 (+)NCBICelera
Cytogenetic Map10p14-p13NCBI
HuRef1012,154,403 - 12,209,871 (+)NCBIHuRef
CHM1_11012,237,973 - 12,292,300 (+)NCBICHM1_1
T2T-CHM13v2.01012,207,199 - 12,261,555 (+)NCBIT2T-CHM13v2.0
Cdc123
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3925,799,105 - 5,849,988 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl25,799,105 - 5,849,975 (-)EnsemblGRCm39 Ensembl
GRCm3825,794,294 - 5,845,177 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl25,794,294 - 5,845,164 (-)EnsemblGRCm38mm10GRCm38
MGSCv3725,715,340 - 5,766,006 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3625,711,566 - 5,762,232 (-)NCBIMGSCv36mm8
Celera25,745,348 - 5,796,007 (-)NCBICelera
Cytogenetic Map2A1NCBI
cM Map23.62NCBI
Cdc123
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81777,368,376 - 77,412,659 (+)NCBIGRCr8
mRatBN7.21772,459,270 - 72,503,316 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1772,459,282 - 72,503,316 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1775,965,092 - 76,010,233 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01779,786,550 - 79,831,696 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01773,836,809 - 73,881,953 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01776,410,629 - 76,454,275 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1776,410,585 - 76,454,282 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01778,066,927 - 78,109,297 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41783,520,539 - 83,562,898 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11783,531,378 - 83,574,098 (+)NCBI
Celera1771,909,202 - 71,950,416 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
Cdc123
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955462212,090 - 274,334 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955462212,090 - 270,168 (+)NCBIChiLan1.0ChiLan1.0
CDC123
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2824,728,477 - 24,783,362 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11024,733,809 - 24,788,696 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01012,206,174 - 12,260,583 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11012,186,494 - 12,241,496 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1012,186,494 - 12,245,147 (+)Ensemblpanpan1.1panPan2
CDC123
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1224,184,780 - 24,239,495 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl224,184,807 - 24,240,081 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha221,209,470 - 21,264,203 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0224,555,639 - 24,610,440 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl224,554,623 - 24,610,311 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1221,683,213 - 21,737,932 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,525,581 - 22,580,288 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0223,240,639 - 23,295,423 (-)NCBIUU_Cfam_GSD_1.0
Cdc123
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934426,934,029 - 26,983,813 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364843,099,011 - 3,149,514 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364843,099,221 - 3,149,005 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC123
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1912,246,949 - 12,299,832 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl912,247,231 - 12,299,841 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605117,753,033 - 17,805,645 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc123
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248054,922,677 - 4,983,629 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248054,922,912 - 4,983,104 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CDC123
2462 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 5 2 23 2 3 2
Low 2 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000012161   ⟹   ENSSSCP00000011851
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1059,718,340 - 59,765,621 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000028931   ⟹   ENSSSCP00000025611
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1059,718,361 - 59,765,390 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000066994   ⟹   ENSSSCP00000069051
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1059,718,340 - 59,765,621 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000103008   ⟹   ENSSSCP00000079048
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1059,718,340 - 59,765,621 (-)Ensembl
RefSeq Acc Id: NM_001243823   ⟹   NP_001230752
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11059,718,340 - 59,765,621 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005668196   ⟹   XP_005668253
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11059,718,340 - 59,765,451 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001230752   ⟸   NM_001243823
- UniProtKB: F1RUP8 (UniProtKB/TrEMBL),   A0A4X1TE49 (UniProtKB/TrEMBL),   A0A8D0JER3 (UniProtKB/TrEMBL),   A0A8D1KJH2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005668253   ⟸   XM_005668196
- Peptide Label: isoform X1
- UniProtKB: I3LND7 (UniProtKB/TrEMBL),   A0A8D2ADH9 (UniProtKB/TrEMBL),   A0A4X1TID5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000011851   ⟸   ENSSSCT00000012161
RefSeq Acc Id: ENSSSCP00000069051   ⟸   ENSSSCT00000066994
RefSeq Acc Id: ENSSSCP00000025611   ⟸   ENSSSCT00000028931
RefSeq Acc Id: ENSSSCP00000079048   ⟸   ENSSSCT00000103008


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011112 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005028109 UniProtKB/TrEMBL
  ENSSSCG00015074769 UniProtKB/TrEMBL
  ENSSSCG00025067957 UniProtKB/TrEMBL
  ENSSSCG00030012202 UniProtKB/TrEMBL
  ENSSSCG00035033741 UniProtKB/TrEMBL
  ENSSSCG00040068286 UniProtKB/TrEMBL
  ENSSSCG00045002725 UniProtKB/TrEMBL
  ENSSSCG00050039160 UniProtKB/TrEMBL
  ENSSSCG00055004206 UniProtKB/TrEMBL
  ENSSSCG00065078471 UniProtKB/TrEMBL
  ENSSSCG00070009102 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012161 ENTREZGENE
  ENSSSCT00000012161.3 UniProtKB/TrEMBL
  ENSSSCT00000028931 ENTREZGENE
  ENSSSCT00000028931.4 UniProtKB/TrEMBL
  ENSSSCT00000066994.1 UniProtKB/TrEMBL
  ENSSSCT00000103008.1 UniProtKB/TrEMBL
  ENSSSCT00005044496.1 UniProtKB/TrEMBL
  ENSSSCT00005044605.1 UniProtKB/TrEMBL
  ENSSSCT00005044677.1 UniProtKB/TrEMBL
  ENSSSCT00015100684.1 UniProtKB/TrEMBL
  ENSSSCT00015100749.1 UniProtKB/TrEMBL
  ENSSSCT00015101022.1 UniProtKB/TrEMBL
  ENSSSCT00015101096.1 UniProtKB/TrEMBL
  ENSSSCT00025093444.1 UniProtKB/TrEMBL
  ENSSSCT00025093669.1 UniProtKB/TrEMBL
  ENSSSCT00030016779.1 UniProtKB/TrEMBL
  ENSSSCT00030016790.1 UniProtKB/TrEMBL
  ENSSSCT00030016797.1 UniProtKB/TrEMBL
  ENSSSCT00035044720.1 UniProtKB/TrEMBL
  ENSSSCT00035044723.1 UniProtKB/TrEMBL
  ENSSSCT00035044738.1 UniProtKB/TrEMBL
  ENSSSCT00040093535.1 UniProtKB/TrEMBL
  ENSSSCT00040093681.1 UniProtKB/TrEMBL
  ENSSSCT00045004267.1 UniProtKB/TrEMBL
  ENSSSCT00045004276.1 UniProtKB/TrEMBL
  ENSSSCT00045004292.1 UniProtKB/TrEMBL
  ENSSSCT00050052813.1 UniProtKB/TrEMBL
  ENSSSCT00050052818.1 UniProtKB/TrEMBL
  ENSSSCT00050052823.1 UniProtKB/TrEMBL
  ENSSSCT00055008307.1 UniProtKB/TrEMBL
  ENSSSCT00055008313.1 UniProtKB/TrEMBL
  ENSSSCT00055008319.1 UniProtKB/TrEMBL
  ENSSSCT00065108805.1 UniProtKB/TrEMBL
  ENSSSCT00065108832.1 UniProtKB/TrEMBL
  ENSSSCT00065108848.1 UniProtKB/TrEMBL
  ENSSSCT00070017682.1 UniProtKB/TrEMBL
  ENSSSCT00070017686.1 UniProtKB/TrEMBL
  ENSSSCT00070017692.1 UniProtKB/TrEMBL
  ENSSSCT00070017707.1 UniProtKB/TrEMBL
InterPro CDC123 UniProtKB/TrEMBL
KEGG Report ssc:100511344 UniProtKB/TrEMBL
NCBI Gene CDC123 ENTREZGENE
PANTHER CELL DIVISION CYCLE PROTEIN 123 HOMOLOG UniProtKB/TrEMBL
  PTHR15323 UniProtKB/TrEMBL
Pfam D123 UniProtKB/TrEMBL
PIRSF Cdc123 UniProtKB/TrEMBL
UniProt A0A4X1TE49 ENTREZGENE
  A0A4X1TFY3_PIG UniProtKB/TrEMBL
  A0A4X1TID5 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TIE0_PIG UniProtKB/TrEMBL
  A0A8D0JER3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Q0B2_PIG UniProtKB/TrEMBL
  A0A8D0UZI6_PIG UniProtKB/TrEMBL
  A0A8D0VLR1_PIG UniProtKB/TrEMBL
  A0A8D1KJH2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2ADH9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FI93_PIG UniProtKB/TrEMBL
  F1RUP8 ENTREZGENE, UniProtKB/TrEMBL
  I3LND7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1TE49 UniProtKB/TrEMBL
  A0A5G2QW01 UniProtKB/TrEMBL
VGNC ID VGNC:95819 ENTREZGENE