SHTN1 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 14 | 127,064,397 - 127,175,227 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 14 | 127,065,507 - 127,175,222 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 14 | 138,374,673 - 138,474,865 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SHTN1 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 10 | 116,881,477 - 117,126,586 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 10 | 116,881,477 - 117,126,586 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 10 | 118,640,988 - 118,886,097 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 10 | 118,634,298 - 118,754,866 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 10 | 118,634,297 - 118,754,866 | NCBI | | | | | Celera | 10 | 112,373,761 - 112,494,434 (-) | NCBI | | Celera | | | Cytogenetic Map | 10 | q25.3 | NCBI | | | | | HuRef | 10 | 112,271,060 - 112,514,144 (-) | NCBI | | HuRef | | | CHM1_1 | 10 | 118,926,007 - 119,170,550 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 10 | 117,775,790 - 118,020,853 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Shtn1 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 19 | 58,961,790 - 59,064,536 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 19 | 58,961,788 - 59,064,532 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 19 | 58,973,358 - 59,076,124 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 19 | 58,973,356 - 59,076,100 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 19 | 59,047,848 - 59,150,559 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 19 | 59,026,608 - 59,129,319 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 19 | 61,169,551 - 61,273,002 (-) | NCBI | | Celera | | | Cytogenetic Map | 19 | D2- D3 | NCBI | | | | | cM Map | 19 | 54.56 | NCBI | | | | |
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Shtn1 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 1 | 268,108,095 - 268,211,947 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 1 | 258,121,966 - 258,225,861 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 1 | 258,121,968 - 258,228,265 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 1 | 266,328,763 - 266,432,664 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 1 | 273,034,770 - 273,138,674 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 1 | 265,676,574 - 265,780,223 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 1 | 280,129,228 - 280,233,873 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 1 | 280,130,504 - 280,233,929 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 1 | 287,492,520 - 287,596,742 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 1 | 265,492,017 - 265,597,362 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 1 | 265,703,061 - 265,791,387 (-) | NCBI | | | | | Celera | 1 | 253,780,118 - 253,883,412 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | q55 | NCBI | | | | |
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Shtn1 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955431 | 21,653,415 - 21,734,426 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955431 | 21,653,415 - 21,734,160 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SHTN1 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 8 | 128,754,580 - 128,874,988 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 10 | 128,759,919 - 128,880,890 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 10 | 113,466,218 - 113,587,490 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 10 | 116,896,155 - 117,016,223 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 10 | 116,896,155 - 117,016,223 (-) | Ensembl | panpan1.1 | | panPan2 | |
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SHTN1 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 28 | 27,422,086 - 27,517,190 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 28 | 27,421,579 - 27,517,935 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 28 | 27,573,585 - 27,668,504 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 28 | 27,959,994 - 28,054,999 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 28 | 27,957,550 - 28,055,005 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 28 | 27,514,665 - 27,609,578 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 28 | 27,534,711 - 27,629,636 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 28 | 27,722,736 - 27,817,796 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Shtn1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024407213 | 18,670,096 - 18,776,128 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936486 | 6,786,015 - 6,867,236 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936486 | 6,786,037 - 6,867,221 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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SHTN1 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 9 | 109,696,107 - 109,817,537 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 9 | 109,697,657 - 109,816,774 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666048 | 70,951,162 - 71,071,731 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Shtn1 (Heterocephalus glaber - naked mole-rat) |
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