SHTN1 (shootin 1) - Rat Genome Database

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Gene: SHTN1 (shootin 1) Sus scrofa
Analyze
Symbol: SHTN1
Name: shootin 1
RGD ID: 14166446
Description: ENCODES a protein that exhibits actin filament binding (ortholog); cell adhesion molecule binding (ortholog); identical protein binding (ortholog); INVOLVED IN actin filament bundle retrograde transport (ortholog); axonogenesis (ortholog); Cdc42 protein signal transduction (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN lamellipodium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: KIAA1598; shootin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14127,064,397 - 127,175,227 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114127,065,507 - 127,175,222 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214138,374,673 - 138,474,865 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
SHTN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14127,064,397 - 127,175,227 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114127,065,507 - 127,175,222 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214138,374,673 - 138,474,865 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SHTN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810116,881,477 - 117,126,586 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10116,881,477 - 117,126,586 (-)EnsemblGRCh38hg38GRCh38
GRCh3710118,640,988 - 118,886,097 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610118,634,298 - 118,754,866 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410118,634,297 - 118,754,866NCBI
Celera10112,373,761 - 112,494,434 (-)NCBICelera
Cytogenetic Map10q25.3NCBI
HuRef10112,271,060 - 112,514,144 (-)NCBIHuRef
CHM1_110118,926,007 - 119,170,550 (-)NCBICHM1_1
T2T-CHM13v2.010117,775,790 - 118,020,853 (-)NCBIT2T-CHM13v2.0
Shtn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391958,961,790 - 59,064,536 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1958,961,788 - 59,064,532 (-)EnsemblGRCm39 Ensembl
GRCm381958,973,358 - 59,076,124 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1958,973,356 - 59,076,100 (-)EnsemblGRCm38mm10GRCm38
MGSCv371959,047,848 - 59,150,559 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361959,026,608 - 59,129,319 (-)NCBIMGSCv36mm8
Celera1961,169,551 - 61,273,002 (-)NCBICelera
Cytogenetic Map19D2- D3NCBI
cM Map1954.56NCBI
Shtn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81268,108,095 - 268,211,947 (-)NCBIGRCr8
mRatBN7.21258,121,966 - 258,225,861 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1258,121,968 - 258,228,265 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1266,328,763 - 266,432,664 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01273,034,770 - 273,138,674 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01265,676,574 - 265,780,223 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01280,129,228 - 280,233,873 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1280,130,504 - 280,233,929 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01287,492,520 - 287,596,742 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41265,492,017 - 265,597,362 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11265,703,061 - 265,791,387 (-)NCBI
Celera1253,780,118 - 253,883,412 (-)NCBICelera
Cytogenetic Map1q55NCBI
Shtn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543121,653,415 - 21,734,426 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543121,653,415 - 21,734,160 (-)NCBIChiLan1.0ChiLan1.0
SHTN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28128,754,580 - 128,874,988 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110128,759,919 - 128,880,890 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010113,466,218 - 113,587,490 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110116,896,155 - 117,016,223 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10116,896,155 - 117,016,223 (-)Ensemblpanpan1.1panPan2
SHTN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12827,422,086 - 27,517,190 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2827,421,579 - 27,517,935 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2827,573,585 - 27,668,504 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02827,959,994 - 28,054,999 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2827,957,550 - 28,055,005 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12827,514,665 - 27,609,578 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02827,534,711 - 27,629,636 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02827,722,736 - 27,817,796 (-)NCBIUU_Cfam_GSD_1.0
Shtn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721318,670,096 - 18,776,128 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364866,786,015 - 6,867,236 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364866,786,037 - 6,867,221 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHTN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19109,696,107 - 109,817,537 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9109,697,657 - 109,816,774 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604870,951,162 - 71,071,731 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Shtn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473729,621,459 - 29,719,286 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SHTN1
2161 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 23 2 2
Low 10 3 5 1 2 1 1
Below cutoff 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000011666   ⟹   ENSSSCP00000011364
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14127,064,397 - 127,174,701 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000066109   ⟹   ENSSSCP00000041030
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14127,064,397 - 127,148,895 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000075331   ⟹   ENSSSCP00000073323
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14127,065,518 - 127,175,227 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000078092   ⟹   ENSSSCP00000067263
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14127,080,116 - 127,174,732 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000088932   ⟹   ENSSSCP00000062017
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14127,080,116 - 127,143,209 (-)Ensembl
RefSeq Acc Id: XM_001925635   ⟹   XP_001925670
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114127,065,507 - 127,175,122 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005671487   ⟹   XP_005671544
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114127,065,507 - 127,175,222 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005671488   ⟹   XP_005671545
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114127,065,507 - 127,174,507 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021073402   ⟹   XP_020929061
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114127,083,469 - 127,174,954 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001925670 (Get FASTA)   NCBI Sequence Viewer  
  XP_005671544 (Get FASTA)   NCBI Sequence Viewer  
  XP_005671545 (Get FASTA)   NCBI Sequence Viewer  
  XP_020929061 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000011364
  ENSSSCP00000011364.3
  ENSSSCP00000062017.2
  ENSSSCP00000067263.1
  ENSSSCP00000073323
  ENSSSCP00000073323.1
  ENSSSCP00005002447.1
  ENSSSCP00005002480.1
  ENSSSCP00005002492.1
  ENSSSCP00005002499.1
  ENSSSCP00005002511.1
  ENSSSCP00005002517.1
  ENSSSCP00025034362.1
  ENSSSCP00025034483.1
  ENSSSCP00025034636.1
  ENSSSCP00025034765.1
  ENSSSCP00025034895.1
  ENSSSCP00030029838.1
  ENSSSCP00030029851.1
  ENSSSCP00030029889.1
  ENSSSCP00030029911.1
  ENSSSCP00030029931.1
  ENSSSCP00030029952.1
  ENSSSCP00035002837.1
  ENSSSCP00040027175.1
  ENSSSCP00040027271.1
  ENSSSCP00040027360.1
  ENSSSCP00040027445.1
  ENSSSCP00040027533.1
  ENSSSCP00040027632.1
  ENSSSCP00040027693.1
  ENSSSCP00045003162.1
  ENSSSCP00045003170.1
  ENSSSCP00045003174.1
  ENSSSCP00045003188.1
  ENSSSCP00045003199.1
  ENSSSCP00050040283.1
  ENSSSCP00050040300.1
  ENSSSCP00050040303.1
  ENSSSCP00055031820.1
  ENSSSCP00055031932.1
  ENSSSCP00055032081.1
  ENSSSCP00055032197.1
  ENSSSCP00060000409.1
  ENSSSCP00060000415.1
  ENSSSCP00065036176.1
  ENSSSCP00065036178.1
  ENSSSCP00065036182.1
  ENSSSCP00065036190.1
  ENSSSCP00065036197.1
  ENSSSCP00070007875.1
  ENSSSCP00070007887.1
  ENSSSCP00070007897.1
  ENSSSCP00070007908.1
RefSeq Acc Id: XP_005671544   ⟸   XM_005671487
- Peptide Label: isoform X4
- UniProtKB: A0A5G2R7T6 (UniProtKB/TrEMBL),   A0A8D0LEE6 (UniProtKB/TrEMBL),   A0A4X1SZG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_001925670   ⟸   XM_001925635
- Peptide Label: isoform X1
- UniProtKB: A0A8D0X225 (UniProtKB/TrEMBL),   F1S4S1 (UniProtKB/TrEMBL),   A0A4X1SXE7 (UniProtKB/TrEMBL),   A0A8D1NPF9 (UniProtKB/TrEMBL),   A0A8D2CDI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005671545   ⟸   XM_005671488
- Peptide Label: isoform X2
- UniProtKB: A0A8D1KDK7 (UniProtKB/TrEMBL),   A0A8D1KPF6 (UniProtKB/TrEMBL),   A0A8D0I2X8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020929061   ⟸   XM_021073402
- Peptide Label: isoform X3
- UniProtKB: A0A4X1SZG4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000062017   ⟸   ENSSSCT00000088932
RefSeq Acc Id: ENSSSCP00000067263   ⟸   ENSSSCT00000078092
RefSeq Acc Id: ENSSSCP00000073323   ⟸   ENSSSCT00000075331
RefSeq Acc Id: ENSSSCP00000011364   ⟸   ENSSSCT00000011666
RefSeq Acc Id: ENSSSCP00000041030   ⟸   ENSSSCT00000066109


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010665 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005002714 UniProtKB/TrEMBL
  ENSSSCG00025057553 UniProtKB/TrEMBL
  ENSSSCG00030046797 UniProtKB/TrEMBL
  ENSSSCG00035006764 UniProtKB/TrEMBL
  ENSSSCG00040047196 UniProtKB/TrEMBL
  ENSSSCG00045003013 UniProtKB/TrEMBL
  ENSSSCG00050068397 UniProtKB/TrEMBL
  ENSSSCG00055020400 UniProtKB/TrEMBL
  ENSSSCG00060001099 UniProtKB/TrEMBL
  ENSSSCG00065060630 UniProtKB/TrEMBL
  ENSSSCG00070005000 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011666 ENTREZGENE
  ENSSSCT00000011666.4 UniProtKB/TrEMBL
  ENSSSCT00000075331 ENTREZGENE
  ENSSSCT00000075331.2 UniProtKB/TrEMBL
  ENSSSCT00000078092.1 UniProtKB/TrEMBL
  ENSSSCT00000088932.2 UniProtKB/TrEMBL
  ENSSSCT00005004142.1 UniProtKB/TrEMBL
  ENSSSCT00005004186.1 UniProtKB/TrEMBL
  ENSSSCT00005004204.1 UniProtKB/TrEMBL
  ENSSSCT00005004215.1 UniProtKB/TrEMBL
  ENSSSCT00005004235.1 UniProtKB/TrEMBL
  ENSSSCT00005004250.1 UniProtKB/TrEMBL
  ENSSSCT00025079140.1 UniProtKB/TrEMBL
  ENSSSCT00025079432.1 UniProtKB/TrEMBL
  ENSSSCT00025079767.1 UniProtKB/TrEMBL
  ENSSSCT00025080032.1 UniProtKB/TrEMBL
  ENSSSCT00025080294.1 UniProtKB/TrEMBL
  ENSSSCT00030065305.1 UniProtKB/TrEMBL
  ENSSSCT00030065332.1 UniProtKB/TrEMBL
  ENSSSCT00030065396.1 UniProtKB/TrEMBL
  ENSSSCT00030065435.1 UniProtKB/TrEMBL
  ENSSSCT00030065480.1 UniProtKB/TrEMBL
  ENSSSCT00030065521.1 UniProtKB/TrEMBL
  ENSSSCT00035008410.1 UniProtKB/TrEMBL
  ENSSSCT00040064375.1 UniProtKB/TrEMBL
  ENSSSCT00040064608.1 UniProtKB/TrEMBL
  ENSSSCT00040064753.1 UniProtKB/TrEMBL
  ENSSSCT00040064918.1 UniProtKB/TrEMBL
  ENSSSCT00040065086.1 UniProtKB/TrEMBL
  ENSSSCT00040065268.1 UniProtKB/TrEMBL
  ENSSSCT00040065413.1 UniProtKB/TrEMBL
  ENSSSCT00045004835.1 UniProtKB/TrEMBL
  ENSSSCT00045004845.1 UniProtKB/TrEMBL
  ENSSSCT00045004849.1 UniProtKB/TrEMBL
  ENSSSCT00045004864.1 UniProtKB/TrEMBL
  ENSSSCT00045004875.1 UniProtKB/TrEMBL
  ENSSSCT00050093347.1 UniProtKB/TrEMBL
  ENSSSCT00050093382.1 UniProtKB/TrEMBL
  ENSSSCT00050093387.1 UniProtKB/TrEMBL
  ENSSSCT00055040003.1 UniProtKB/TrEMBL
  ENSSSCT00055040135.1 UniProtKB/TrEMBL
  ENSSSCT00055040320.1 UniProtKB/TrEMBL
  ENSSSCT00055040459.1 UniProtKB/TrEMBL
  ENSSSCT00060001360.1 UniProtKB/TrEMBL
  ENSSSCT00060001374.1 UniProtKB/TrEMBL
  ENSSSCT00065083048.1 UniProtKB/TrEMBL
  ENSSSCT00065083058.1 UniProtKB/TrEMBL
  ENSSSCT00065083067.1 UniProtKB/TrEMBL
  ENSSSCT00065083078.1 UniProtKB/TrEMBL
  ENSSSCT00065083092.1 UniProtKB/TrEMBL
  ENSSSCT00070009597.1 UniProtKB/TrEMBL
  ENSSSCT00070009609.1 UniProtKB/TrEMBL
  ENSSSCT00070009619.1 UniProtKB/TrEMBL
  ENSSSCT00070009631.1 UniProtKB/TrEMBL
Gene3D-CATH Vasodilator-stimulated phosphoprotein UniProtKB/TrEMBL
InterPro Shootin-1 UniProtKB/TrEMBL
KEGG Report ssc:100156189 UniProtKB/TrEMBL
NCBI Gene SHTN1 ENTREZGENE
PANTHER PTHR46606 UniProtKB/TrEMBL
  SHOOTIN-1 UniProtKB/TrEMBL
UniProt A0A4X1SXE7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SXG5_PIG UniProtKB/TrEMBL
  A0A4X1SZG4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SZI2_PIG UniProtKB/TrEMBL
  A0A5G2QEC6_PIG UniProtKB/TrEMBL
  A0A5G2QZ91_PIG UniProtKB/TrEMBL
  A0A5G2R7T6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HVR8_PIG UniProtKB/TrEMBL
  A0A8D0I2X8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0I2Z9_PIG UniProtKB/TrEMBL
  A0A8D0LEE4_PIG UniProtKB/TrEMBL
  A0A8D0LEE6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0SQ37_PIG UniProtKB/TrEMBL
  A0A8D0X225 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ESX6_PIG UniProtKB/TrEMBL
  A0A8D1EU03_PIG UniProtKB/TrEMBL
  A0A8D1KDK7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1KPF6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NPF9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2CDI7 ENTREZGENE, UniProtKB/TrEMBL
  F1S4S1 ENTREZGENE
UniProt Secondary F1S4S1 UniProtKB/TrEMBL
VGNC ID VGNC:92862 ENTREZGENE